3300003629: Hypersaline viral communities from Bras del Port, Santa Pola, Spain - Lo Valdivia P4

Overview

Basic Information

• IMG/M Taxon OID: 3300003629
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0069917 | Gp0107656 | Ga0061041
• Sample Name: Hypersaline viral communities from Bras del Port, Santa Pola, Spain - Lo Valdivia P4
• Sequencing Status: Permanent Draft
• Sequencing Center: Lifesequencing S.L.
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18509764
• Sequencing Scaffolds: 48
• Novel Protein Genes: 50
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → Natrinema thermotolerans	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → Viruses → Predicted Viral	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae → Dpdavirus → Dpdavirus HRTV29	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Chromohalobacter → Chromohalobacter salexigens	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. JWXQ-INN 858	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pontimonas phage phiPsal1	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis taiwanensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline evaporation pond → hypersaline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Bras del Port, Santa Pola, Spain
• Coordinates
  • Lat. (^o): 38.192206
  • Long. (^o): -0.591865
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y
F006972	Metagenome / Metatranscriptome	361	Y
F009454	Metagenome	317	Y
F013961	Metagenome / Metatranscriptome	267	Y
F020468	Metagenome / Metatranscriptome	224	Y
F024650	Metagenome / Metatranscriptome	205	Y
F036020	Metagenome / Metatranscriptome	171	Y
F038111	Metagenome	166	N
F057206	Metagenome / Metatranscriptome	136	Y
F058175	Metagenome / Metatranscriptome	135	Y
F066493	Metagenome	126	Y
F079661	Metagenome	115	Y
F088532	Metagenome	109	Y
F096726	Metagenome	104	N
F097996	Metagenome	104	N
F098766	Metagenome	103	Y
F099972	Metagenome	103	Y
F100996	Metagenome	102	Y
F101207	Metagenome / Metatranscriptome	102	N
F104555	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
P4metv_100040	Not Available	18441
P4metv_100146	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae	9398
P4metv_100259	Not Available	6707
P4metv_100264	Not Available	6646
P4metv_100275	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → Natrinema thermotolerans	6498
P4metv_100381	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5246
P4metv_100491	All Organisms → Viruses → Predicted Viral	4456
P4metv_100615	All Organisms → Viruses → Predicted Viral	3907
P4metv_100760	All Organisms → Viruses → Predicted Viral	3456
P4metv_100959	All Organisms → Viruses → Predicted Viral	2966
P4metv_101034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2825
P4metv_101044	All Organisms → cellular organisms → Archaea → Euryarchaeota	2815
P4metv_101206	All Organisms → Viruses → Predicted Viral	2577
P4metv_101219	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2554
P4metv_101308	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	2424
P4metv_101348	All Organisms → Viruses → Predicted Viral	2384
P4metv_101539	Not Available	2185
P4metv_101900	Not Available	1931
P4metv_101953	All Organisms → Viruses → Predicted Viral	1900
P4metv_102286	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae → Dpdavirus → Dpdavirus HRTV29	1735
P4metv_102754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Chromohalobacter → Chromohalobacter salexigens	1535
P4metv_103153	All Organisms → Viruses → Predicted Viral	1406
P4metv_103165	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	1403
P4metv_103207	All Organisms → Viruses → Predicted Viral	1394
P4metv_103721	Not Available	1251
P4metv_103970	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kirjokansivirales → Haloferuviridae	1199
P4metv_104005	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. JWXQ-INN 858	1193
P4metv_104371	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1118
P4metv_105721	Not Available	925
P4metv_105990	Not Available	893
P4metv_106422	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	852
P4metv_106543	Not Available	842
P4metv_107023	Not Available	807
P4metv_107171	Not Available	795
P4metv_107357	All Organisms → cellular organisms → Bacteria	780
P4metv_107511	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	770
P4metv_107849	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. 48-1-W	746
P4metv_107956	Not Available	738
P4metv_108192	All Organisms → cellular organisms → Bacteria	722
P4metv_109199	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	660
P4metv_109282	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pontimonas phage phiPsal1	656
P4metv_109735	Not Available	634
P4metv_109899	Not Available	626
P4metv_110021	Not Available	619
P4metv_110700	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	587
P4metv_112553	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	518
P4metv_112703	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	513
P4metv_112885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis taiwanensis	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
P4metv_100040	P4metv_10004012	F097996	MAIIRDGMHPRYLGWQVDWPVFVKMPFSADGKHWKRREHFNWAERNLETKDVASLYAQGFIYHNTELAKENKVGDRLSEMNTEELKSLVTQLNAIVKDRTTSSQEYNNKRCKQSKIDDKQRGLIRRFLNRNPWIAEDFYRLRDHIIGD*
P4metv_100146	P4metv_1001469	F066493	MSKREWHDGVVDVADELVQEHSATGAIERLQKRRQTANDELQARCTEAIAYIRREVMDDQS*
P4metv_100164	P4metv_1001648	F104555	MTDRLDEILEGCGADLAALPLSDHDTIRQAVRRSIENNGIHATGEHWAAVLDIIGPAPKEWIDTVKIVFNQEVAECF*
P4metv_100259	P4metv_10025920	F096726	MTRRDDWVRPSRTEASLREHLQRLARGDRLDVDEPTGTLRIERRGPEWRVTHLGTGGGFCWRERMSTRRLLDYLTQWQDRERFDEIELRYVDGDD*
P4metv_100264	P4metv_1002645	F100996	MEHMTEYQKLDWIHFAIQEAMNGNLGELEQALELLEVLREKAN*
P4metv_100275	P4metv_1002754	F003128	MQVEIEVDPENIVKKKADDRGRVTLGAEYAGKKVRVAVLEVVEE*
P4metv_100381	P4metv_1003814	F099972	MPKANKGKRMINLPEAAQYSAWSYKRGVEHGQRIGRQEILDALEHLSAEIKQDIERVIHEKKQNS*
P4metv_100491	P4metv_1004912	F098766	MTHPTCAVCGREADGGDHVRVGVERVPPERPPETYYFHPRCFDRAQDWGAGL*
P4metv_100615	P4metv_1006153	F038111	MIPNKVPVVNREDYTIWLENYRNIATFIHADVYKYNKTVRQDFGEDLEILANLHKYPLYVLAHKDNKKLKKFMSIYGLVLDHKPLCDDGVEREVYRLDRRE*
P4metv_100760	P4metv_1007604	F097996	MTINRDGMHPRYLGWQVDWPVFIKMPFTADGKHWKKSEHFNWAERDLEMKDVASLYAQGFIYHNTELAKVNKIGDRLGEMNTEDLYRLVVQLNGIVKERTTTTKEYNDKRCKQSKIEDKQRGLIRRFLNRNPWIVEDFYKLRDHILGE*
P4metv_100959	P4metv_1009591	F013961	VDIEIILSKRYPEAEWYLENNDYSLLVWLSEGDAPTEAELKKLWPKVQAEIAAEKHARIDAKASAIAKLEALGLTVDEVQVAFGLNA
P4metv_101034	P4metv_1010347	F088532	MIKLELTEQETQALAGLLDAGVKAVGLRAVKDAASLLQKLEDATTPKEEMTDE*
P4metv_101044	P4metv_1010445	F099972	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLNALEALSAEAKEDLKEQLNDL*
P4metv_101206	P4metv_1012067	F099972	MPKAHTGKRLLNLPQAAEYSAWSYERGVEHGRREMREEMLKALEALSDEAKADLERELNEKK*
P4metv_101219	P4metv_1012195	F099972	MPKANKGKRLLNLQQAAEHSAWSFQRGVEHGRREMQAEMMKALESLSAEAKEDLEKKLRDL*
P4metv_101308	P4metv_1013082	F098766	MTHPICAVCGREADGADHVRVEVERVPPERPPETYYFHPGCFDRAQAWEAGL*
P4metv_101348	P4metv_1013483	F009454	MPNFEEIEAAILEVQQPRSRFQLERFVIGQHKTEEMQYYQTCLELQDMIYKYQSAKLNVQKQELKIKRLRETGDEMKELKAQELELGLKQTYIAMQGAEREMLALTEIFYSFPKRYTREEIEAAQPDYWDERLTGNAKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRELGL*
P4metv_101539	P4metv_1015392	F099972	MPKANTGKRLLNLPQAAEYSSWAYKRGVEHGRREMQAEMMKALEALSAEAKKDLEEKLNDL*
P4metv_101900	P4metv_1019004	F013961	MDIAQILTRKFPGQEWTLNGDSFEGLTWLSDGPAPSEAELTGLWPEVEAEIQAEADAKIAAKRSAVAKLEALGLTVEEVSVAFGIEV*
P4metv_101953	P4metv_1019531	F013961	MDIAQVLTRKFPGAEWTLNGDSFEGLTWLSDGPVPSEAELSALWPEVEAEIQAEQDAKVAAKRSAVAKLEALGLTVEEVSVAFGIEV*
P4metv_102286	P4metv_1022861	F079661	MTDTTIQISTDLRDDLREERLPHESNYGDTIRRLMDADDGGQLWTEQEIRDVVDQRIEAVRTR*
P4metv_102754	P4metv_1027542	F038111	MIYKVPVVNKDNYTIWLENYRNIANFIHADVYNYNKTVRQEFGKDLNVLAKLHNAPLYVLTDKDNKKLKKFMSIYGLVLDHTPLCDDGVEREVYRLDRRV*
P4metv_103153	P4metv_1031533	F013961	MNITQILDSKYPGAQWALDGDDYTGLTWLSEGDAPTEAQLKKLWPTVQAEIEAEKQAVIDARLSAISKLEALGLTVDEVQAAFGLKA*
P4metv_103165	P4metv_1031652	F066493	MSESEREWTDGVIDVAEELVHRHSADGAIERLQRRRQTTDDELQARCTEAIAWIRREVQGDE*
P4metv_103207	P4metv_1032072	F009454	MPNFEEIEAAILEVQQPRSRFQLERFVIGQHKTEEMQFYQTCLELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYTAMKGAEREMLALTEIFYEFPKRYTREEIEAAQPSYWDERLTGNAKAQLMGGSGVNPAHIEAMEQAGVLDKLIEEVQESKRELGL*
P4metv_103721	P4metv_1037211	F020468	MPLVKKQITVADGATSDQILPGTTYEYVGPGTRLVVAAAADAAGTQMNFNVNNAEFARDAEVSEKVTGEPFGWKGGYVMNDMVTTAAERNRPIITFTNNSGASRTIDVAVFIGG*
P4metv_103970	P4metv_1039704	F098766	MTHPPCAVCGREADGADHVRLDVERVPPERPPETYYFHPRCFDRAQDWEAGL*
P4metv_104005	P4metv_1040052	F098766	MTYPTCAVCGREADGADHVRLDVERVPPERPPETYYFHPGCFERAQDWEAGL*
P4metv_104371	P4metv_1043711	F009454	MPNFEEIEAAILEVQQPRSRFQLEKFVIGQHKTEEMQFYQTCIELQDMIYKYQSAKLNVQKQELKIKRLRETGDELKELKAQELELGLKQTYIAMQGAEREMLALTEIFYGFPKRYTREEIEAAQPSYWDERLTGNAKAQLMG
P4metv_105721	P4metv_1057212	F079661	MSKTTIELTESKRDALKAERLPHESNYSETIARLLGDSDGGQLWTQSEIEDIVDNRIEAARRTR*
P4metv_105990	P4metv_1059901	F006972	CTLACCSLFRRCWRLRLRRARDRVSVGDRIGAGLEPALLSTQMRVEGLADLTKTLRTLDRKALNKLRAEMRGMINPVAKAIGGDVPSQAPLSGMNHNGVTRWTGTVRSSVSFTPGRAKGGASRLLAMKFTGGTRAGGGIGFDYAELAGSSRRPGARFSKVYDRAGSPGIQHRINGQGRAFNQGIRSYKPIRGRAGYFAYDSAVKRYPMIEGLGKRAIEKFMADATREIGRFR*
P4metv_106422	P4metv_1064222	F098766	MTHPTCAVCGREADGADHVRVEVERVPPERPPETYHFHPRCFDRAQDWERE*
P4metv_106543	P4metv_1065431	F057206	MNYVIYGLIFASILNIIGLYIAIARVAEFRKSVQGLDWEAVATLLGDVATVKRSITRLNGRLNGMDNATPQFDWKEQATKALSQPEPVRQVGG*
P4metv_107023	P4metv_1070233	F098766	MTHPTCAVCGREADGGDHVRVEVERVPPERPPETYYFHPRCFERAQDWEQG*
P4metv_107171	P4metv_1071711	F024650	ITFALSETGDNIYSAAAWVARTIASQYSRRVSTQLDGALSADYSDLAEQYYKLAEDLEYRGKTNGAVLGVAAGGLTISDIQTVRANTNRVEGSFRRDRFRNPPGYETPEYE*
P4metv_107357	P4metv_1073571	F058175	GDTIAAGAAVQTDGNGDAITAATGDVVMGYALEAGVDGQIIAIELIQGGNVVPA*
P4metv_107511	P4metv_1075111	F098766	MTHPTCAVCGREADGGDHVRLDVERVPPERPPETYYFHPGCFDRAQDWEQG*
P4metv_107849	P4metv_1078491	F098766	MTHPTCAVCGREADGGDHVRLDVERVPPEHPPETYYFHPGCFDRAQDWEQG*
P4metv_107956	P4metv_1079561	F099972	MINLPEAAQYSAWSYQRGVEHGQRIGRQEILDALEHLSDEIKQDIERVIHEKKQNG*
P4metv_108192	P4metv_1081921	F013961	MDIPQILTSKYPGAQWVLDGDDYSGLEWLDDSPKPSEAELTALWPEVEAEIQAEADAKIAAKASAVAKLEALGLTVEEVSVAFGIEV*
P4metv_109199	P4metv_1091991	F098766	AVCGREADGADHVRLDVERVPPERPPETYYFHPRCFERAQDWEAGL*
P4metv_109282	P4metv_1092821	F013961	MDIANILTRKYEGSEWTLDGDNYSGLTWLSDGEAPTEAELKKLWPKVQADIAAEAQARIDAKASAIAKLEALGLTVDEVQVAFGLNADE*
P4metv_109735	P4metv_1097352	F013961	MDYAQILTRKYPGAEWTLNGDSYKGLTWLSESPKPKKAELDALWPEVEAEIAAEAQAKVDARRSAVEKLQALGLTVD
P4metv_109899	P4metv_1098991	F099972	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVEMLDALESLSEEAKQDIERKINENH*
P4metv_110021	P4metv_1100211	F099972	MPKANTGKRLLNLPQAAEYSSWSYQRGVEHGRREMQAEMMKALEALSAEAKKDLEKKLRDL*
P4metv_110700	P4metv_1107001	F066493	MSDAEREWTDGVIDVAEELVHRHSADGAIERLQRRRQTTDDELQARCNEAIAWIRREVQGDA*
P4metv_111846	P4metv_1118461	F101207	AINTSGNFSIYEPEAWVEVYLANQYPSRPMVSKAVTNVAGADIEGLVAARNKAVNITRSVKPAATDVNDYSGSYSTFSTPNAEEQTLTINKHKYMQFQIDKADQRFALPDLVEQHFVPRLHALIDSINADVKAEAKKFEAAFADLNTNATILDDADLREARRILKSRKFAQEGYCAVLDP
P4metv_112553	P4metv_1125531	F098766	MTHPTCAVCGREADGADHVRLDVERVPPERPPETYHFHPRCFDRAQAWEQE*
P4metv_112703	P4metv_1127032	F098766	MTHPTCAVCGREADGADHVRVQVERVPPERPPETYYFHKRCFDRAQAWEQG*
P4metv_112885	P4metv_1128851	F036020	VHDDIPAWAIELIRQVERLNEKLPTHVDWVERNIKDHEMRIRSLERKIWLAMGAAAVAGGIIGSIGSAMGL*