3300003615: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_110m_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003615
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0091512 | Ga0008830
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_110m_DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 125615048
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	2
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004164	Metagenome / Metatranscriptome	450	Y
F010921	Metagenome / Metatranscriptome	297	Y
F026538	Metagenome	197	Y
F029239	Metagenome / Metatranscriptome	189	Y
F035724	Metagenome	171	Y
F039110	Metagenome / Metatranscriptome	164	Y
F043633	Metagenome / Metatranscriptome	156	N
F046847	Metagenome / Metatranscriptome	150	N
F057395	Metagenome / Metatranscriptome	136	N
F058917	Metagenome / Metatranscriptome	134	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26271J51732_1002838	All Organisms → Viruses → Predicted Viral	4603
JGI26271J51732_1008184	All Organisms → Viruses → Predicted Viral	1995
JGI26271J51732_1011504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1502
JGI26271J51732_1011585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1495
JGI26271J51732_1019768	Not Available	969
JGI26271J51732_1025483	Not Available	796
JGI26271J51732_1027124	Not Available	760
JGI26271J51732_1041973	All Organisms → cellular organisms → Bacteria → Proteobacteria	558
JGI26271J51732_1042536	Not Available	553
JGI26271J51732_1044561	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	536

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26271J51732_1002838	JGI26271J51732_10028383	F039110	MSKAVSKKADAKKTSAKYQLKALRDGSHGIDGGIYTYKKYDIITLSKKGHFDSMKELACFDEV*
JGI26271J51732_1002838	JGI26271J51732_10028387	F058917	MDKLLKALEKESKDIRSADMVVNGKIHQIYYRIMSGDDHARALELSKKTKNIKETDGSTTELTYYDDDLLRCXIIYFQLLDKDGSRVFTDLPKIQWIKDNITYETASYLAAVMGLKSVSDIVEEQQEALKKMNG*
JGI26271J51732_1008184	JGI26271J51732_10081843	F059474	VKHXTVVSTDDPAIDLANSDVSAYIDSHDLKHLSFKAGEEPTTFHLGTITFMKFAEIKDKHISFDLGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK*
JGI26271J51732_1011504	JGI26271J51732_10115043	F060929	ELVIDKVDPQGISKPIVRAIFSMNQDKLPSYEGIYDPAKDEYIVVRLNNVISNEVTDNLSVDIYRDEYVAALKNEIDNAYVDDLRSLADIEYNPQVIQFRN*
JGI26271J51732_1011585	JGI26271J51732_10115851	F043633	MDFRKIVLNFFSVLNSIYLGLVIYIEFFMENLTKEPYEIYYDLWMYVFVGYCAILIFNYAMFGKVTLWNFKSNX*
JGI26271J51732_1019768	JGI26271J51732_10197681	F046847	MADEQTEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELADILGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFI
JGI26271J51732_1025483	JGI26271J51732_10254831	F029239	LTNSNGDNSLDGLVVDWHLANSEMGFDNYVEPTSDYQSTYALAA*
JGI26271J51732_1027124	JGI26271J51732_10271242	F046847	MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIDQLKGDKPYLFSGGEVQPKRVD
JGI26271J51732_1036532	JGI26271J51732_10365321	F057395	TTNCKSTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSKRLISKETWILIN*
JGI26271J51732_1041973	JGI26271J51732_10419732	F026538	MYKLNEDSIQRLSDNASVPIADGNRDYQQFLQDVKVNGLTIVEGADVIE
JGI26271J51732_1042536	JGI26271J51732_10425362	F010921	MALNAKGGVKIIEGKAYIHPLSIQEIEFLLNLLANTEHKGSELQKVMQVTYKLREEY
JGI26271J51732_1044561	JGI26271J51732_10445611	F004164	QAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDITEGNQIKGYSVFARHIQIKNYPVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKSTQPGMNFSNSTGEIYVESWF
JGI26271J51732_1045225	JGI26271J51732_10452251	F035724	MIFKYPTLASPTTTLTFTNNPESPYEREVIKHNSSVQMEDGSFFVYSRSVTNYRYTISVVLTSESERDSLESFYDSTVNGMEKTFSYTDPYSDSYTVRFEDELHISEIFKDRMYRATFNLIQTA*