3300003606: Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300003606
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093343 | Ga0040883
• Sample Name: Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 111431015
• Sequencing Scaffolds: 32
• Novel Protein Genes: 38
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	21
All Organisms → cellular organisms → Bacteria	9
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → waterfall → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014385	Metagenome / Metatranscriptome	263	Y
F024968	Metagenome / Metatranscriptome	203	Y
F028182	Metagenome / Metatranscriptome	192	N
F063403	Metagenome / Metatranscriptome	129	N
F063724	Metagenome / Metatranscriptome	129	N
F067777	Metagenome / Metatranscriptome	125	N
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F086424	Metagenome / Metatranscriptome	110	Y
F087247	Metagenome / Metatranscriptome	110	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F096328	Metagenome	104	Y
F100012	Metagenome	103	N
F102748	Metagenome / Metatranscriptome	101	N
F104114	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26462J51802_1004226	Not Available	3864
JGI26462J51802_1005387	All Organisms → cellular organisms → Bacteria	3235
JGI26462J51802_1006339	Not Available	2850
JGI26462J51802_1006358	All Organisms → cellular organisms → Bacteria	2843
JGI26462J51802_1006819	Not Available	2693
JGI26462J51802_1007002	All Organisms → cellular organisms → Bacteria	2636
JGI26462J51802_1007048	All Organisms → cellular organisms → Bacteria	2622
JGI26462J51802_1007231	Not Available	2572
JGI26462J51802_1008162	All Organisms → cellular organisms → Bacteria	2340
JGI26462J51802_1008290	All Organisms → cellular organisms → Bacteria	2306
JGI26462J51802_1008732	All Organisms → cellular organisms → Bacteria	2216
JGI26462J51802_1009076	All Organisms → Viruses → Predicted Viral	2145
JGI26462J51802_1010521	All Organisms → cellular organisms → Bacteria	1896
JGI26462J51802_1010771	Not Available	1860
JGI26462J51802_1010796	Not Available	1854
JGI26462J51802_1012861	Not Available	1591
JGI26462J51802_1013871	Not Available	1490
JGI26462J51802_1014200	Not Available	1459
JGI26462J51802_1014280	Not Available	1452
JGI26462J51802_1014653	Not Available	1420
JGI26462J51802_1016515	Not Available	1272
JGI26462J51802_1017044	All Organisms → Viruses → Predicted Viral	1236
JGI26462J51802_1018220	Not Available	1166
JGI26462J51802_1019239	Not Available	1111
JGI26462J51802_1020397	Not Available	1054
JGI26462J51802_1024024	Not Available	910
JGI26462J51802_1024136	Not Available	907
JGI26462J51802_1026463	Not Available	836
JGI26462J51802_1028641	Not Available	778
JGI26462J51802_1029189	All Organisms → cellular organisms → Bacteria	766
JGI26462J51802_1033366	Not Available	680
JGI26462J51802_1038573	Not Available	599

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26462J51802_1000858	JGI26462J51802_10008587	F087247	VDSNAKAVNYEVPRWSMLREFWYEVKRDGTVEFHIRLCAPLPSSSNNLMALRINFADSQIVAPLHGYSYACAGGKVSPGQAAIVGYEAPGKEPILSWLSVVVRKDVVTIAVPASEVPLLGEELLEVYSFYGPREHGCLNLVDVICIDKELLGSSRPLVMPPCAQ*
JGI26462J51802_1004226	JGI26462J51802_10042262	F084856	VLYFHEDIKPMERGDAMSDLSNLMIVTHLYTKEHAEALSQTLSEWRKLVPSSQIIVGYYQNRFQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGASGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLSRNCNPVRYVKPETQTDXKSSKPSGRR*
JGI26462J51802_1005387	JGI26462J51802_10053872	F063724	MPSSWLRRWRDEYYTENPVVWLLAKTESELCLRQISAPEPAEAGSASSRLQLLKSDSVYSTRYFLWADEKEFERTLLAPWHLPSYRWMPVSDQIYLAFASLVTMTALVIHYALAKPPVWVGAIGVGVVIVMFFAPMARPMLALHSLAQTLTAETPLHIGVSRLTPGHLVYGALLYGVGRIARTSAVYGLLPALLVATTAQGTVFRGLPTAILLWGYSVCVGALWILCTLAILYGQTTRLHGASRDWVRWQNILALAAGLLSASLLAVSVPAPVPVPALTAWVHTPLWWWGFVPPLGIVSGLAVEFHPLWALSHIVGMLLYAGLGAAACLRLLRGVWRSQEQPLNAETEGWE*
JGI26462J51802_1006339	JGI26462J51802_10063394	F063403	MEQTFDRQEALRALRVAIRSVRRTPIRIPFGDDDRFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPSVITAFRLPAEDDDGNFVQAIYNAEPLPDMPVINLTPADLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMPGDQ*
JGI26462J51802_1006358	JGI26462J51802_10063584	F104114	MERLQLWLSLTQDEKFAAAEKGLKDAIVARYDEFADEWSLSRSVEDIAPSALAEIVVQTVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTFGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQVSLIKEVK*
JGI26462J51802_1006819	JGI26462J51802_10068192	F084856	MERGDAMSDLSNLMIVTHLYTKEHSEALSQTLPEWRKLAPSSQIIVGFYQSRFEPSDFSNLMHDDAVEFVPVSNSSYGAAYDTLLEKTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPRNCNPVRYVKPETQTDKKSSKPSGRR*
JGI26462J51802_1007002	JGI26462J51802_10070022	F067777	MPKLTIEVDPKAWQLLHEQAERQGLTPEALAQQLLLGELRARGKRSRRRDMDNESLHAASLPRGSLQRVFTTLERIDTLLPFDTPPPSREEVDAYLEQERASWENSDGV*
JGI26462J51802_1007048	JGI26462J51802_10070485	F086364	MEREKIIAALETAFADISGAEYEDEPVTFAEFLESFKKFRDPDFPVYWIPWTVEEAVEELTGRKFGWHEDALKDEWNYTGEFSFICVDPETFKCLTAERSNGSCTVSVVFPILSIDDAVQAVEYFLRLVQQA*
JGI26462J51802_1007231	JGI26462J51802_10072312	F063403	MEQTFDRQEALRALRVAIRSVRRTPIRIPFGDDDRFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDIPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMSGDQ*
JGI26462J51802_1008162	JGI26462J51802_10081623	F014385	VKRPSSEVGDWWDLVQLALVRSALEQLAPEEERALWLYAEGARLTKQQRTHAETALAKVRRMLKLEP*
JGI26462J51802_1008290	JGI26462J51802_10082901	F069506	MQLEQLPYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWNDPDFPNDIPEIIIRAVEKLIGKSLAWYCELVRDPSGFTGEYSFIAVDPQTRKCLTYRQFTFDGVNVHYFLSVSGTVIYYEDIIGLVIKLLNKIQPELVTE*
JGI26462J51802_1008290	JGI26462J51802_10082902	F086364	MEREKIIAALETAXAEISGAKYEDEPETFAEFLESFKKFRDPETPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLRLVQQA*
JGI26462J51802_1008732	JGI26462J51802_10087324	F086364	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFAKFRDPDFPVYWIPYTIEEAVELLTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQAVEYFLRLVQQA*
JGI26462J51802_1009076	JGI26462J51802_10090765	F092976	MTVQEILHWKQELRRVLQEFLQVWQKCPKCGAKWADISWDAESDHEFLLVECRSGHLFRADEQFWLFDYDDSGVYVPSEETAMTEVSGYAG*
JGI26462J51802_1010521	JGI26462J51802_10105213	F028182	MPKVSISEAARRLDTTEEVIREWIRLGLPDVELPSAKPRRTRELNPAFQPTSATPEPKVDLEQLYEVADQVGWFLLSMEAWDMADAETACQLSHTGTIPPP*
JGI26462J51802_1010771	JGI26462J51802_10107714	F069506	MQLEQSTYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWDEPDFPNDIPEIIIRAVEKLIGKSLAWYCELVRDPSGFTGEYSFIVVDPQTRKCLTYRQFTFDGVNVHYFLSVAGTVIYYEDIIRLVIKLLNQIQPELVTA*
JGI26462J51802_1010796	JGI26462J51802_10107963	F080678	MFVRKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
JGI26462J51802_1010796	JGI26462J51802_10107964	F088087	MLKASDGSLWTPVTVSSAPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEQFIAGGDA*
JGI26462J51802_1012861	JGI26462J51802_10128614	F092976	MTVQEILHWKQELRRVRQEFLQVWQKCPKCGAKWADIAWDAESDHEFLLVECRSGHLFRADEQFWLFDCDDYSDAGVYAPSEETEMPEVSAYAGEGRKCVL*
JGI26462J51802_1013871	JGI26462J51802_10138713	F014385	MVECDWYELMQIIFVRSAMEQLAPEEERALWLYAEGARLPKRERQLAETAIAKVRRMLNLE*
JGI26462J51802_1014200	JGI26462J51802_10142001	F063403	PIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDLPVINLTPMDLFSDDSAFNATPALMTVIITSLMTLSGRTQAVAAGVNALLELFPGANQNSADLLEQGSSGMPGDQ*
JGI26462J51802_1014280	JGI26462J51802_10142803	F096328	MTEAAYFFSKEAEVILAPYVQVLVGADKPPQISSPLFAESWDYDFEGLRVDLKLAMKAGIYGKIADQLLADIKKALRDGVAVALLVPPRLYLLHPWDITWDGRLETLRNRPSVLLPKSVLEQVWELYERMTN*
JGI26462J51802_1014653	JGI26462J51802_10146532	F092976	MAMTVQEILHWKQELRRVRQEFLQVWQKCPKCGAKWADIAWDAESDHEFLLVECRSGHLFRADEQFWLFDCDDYSDAGVYAPSEETEMPEVSAYAGEGRKCVL*
JGI26462J51802_1016515	JGI26462J51802_10165152	F100012	MDREKVLQALREAQAEYDIKNLDRLVREAWEEGDVLYAEIVVELTERAVEILFDQNFIWVHIIESEDCEEWIPDGWYSFVVVHPETGQCLTFLKDPVHSGKSRASFRARIRSADDAVDAVMRLAELIEQNLKSRAVE*
JGI26462J51802_1017044	JGI26462J51802_10170442	F100012	MDMEKVLQALREAQAEYNIKDLDSFIKTAWEEGDVLQAQFVAEMVERAVEILFGRHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYRWKSASFRARIRSADDAVDAVTRLAELIEQNLKSRAVE*
JGI26462J51802_1018220	JGI26462J51802_10182202	F084856	MERGDAMSDLSNLMIVTHLYTKEHAEALSQTLPEWRKLAPSSQIIVGYYQSRFQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLEKTIGKPILILAPYAVPKEWFIGASGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLL
JGI26462J51802_1019239	JGI26462J51802_10192392	F100012	MDREKVLQALREAQAEYDIKDLDRLVREAWEEGDVLYAEIAVELIERAVEILFNQHFLWVHIVESEDCEEWIPDGWYSFVAVHPETGQCLTFLNDPVCRCKSARFRARIRSAEDAVDAVMRLAELIEQNLKSRAVE*
JGI26462J51802_1020397	JGI26462J51802_10203972	F069506	MQLTYTEEQIKQAIEEVWQELLQETDAENYSLEEYLEDYRKYWDDPCFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVIDPKTQKCLTYREYTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALAAA*
JGI26462J51802_1023223	JGI26462J51802_10232231	F102748	MMNSLRAICCGRYNRSAVGFSPKPSMLSKLAVVLLVYTLVLLCGQPTVADSASQHTQDVRVYKIRVDYTATIRYTDERGEVQEKSVQRACEFVFDTPISFEEALSLIDGAFVTGVSSHNSLTHEVTKACSEQCRGVWCCWLGRDSKEWTWKPDGIWLASLY*
JGI26462J51802_1024024	JGI26462J51802_10240243	F080678	MFVRKVDAKTPIEEVYDNWERIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLHGISAGKFMRKLQKLGVTWSYNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
JGI26462J51802_1024136	JGI26462J51802_10241362	F080678	MFVRKVDARTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
JGI26462J51802_1024136	JGI26462J51802_10241363	F088087	MKASDGSVWMPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE*
JGI26462J51802_1026463	JGI26462J51802_10264631	F063403	MSVMEQAFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDLPVINLTPMDLFSDDSAFNATPALMTVIITSLMTLSGRTQAVAAGVNALLELFPGANQNSADLLEQGSSGMPGDQ
JGI26462J51802_1028641	JGI26462J51802_10286412	F063403	MTHLITAKEAMSVMEQTFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDMPVINLTPTELFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMSGDQ*
JGI26462J51802_1028880	JGI26462J51802_10288801	F086424	ATTSGRGACVLFVAENIRAYVMTVCNTHTNNIPYYWRLDTAKHSTLASTTYTHRVARNGRAGEILAVPAPPTSSEDTETYPADCVVAYRYRNSFWLPAALSRRQDIADERNPYLFWLLYGLQLAGVRPRYKLPVQLEIDHPLQAVGTGAPFNHAITTQMGILEASWDYMRDFARRKGTAIISGVVVGTKHRSPTTAFHWHLLYSTSRTQAERDAAMRVHQILVAGHREGTTPCGVHDHTIGGGRGYWAVATNTGFVR
JGI26462J51802_1029189	JGI26462J51802_10291891	F024968	VCLVLNSLGNFNRAWTQILRNLGIDYTLCTATGSSTGANIQTPQGVFAAGSPDLRGYFRQFDAVILCDNTGDLAAISLINYSVFWMSWNAPEDPAFLFFNPHFSAAITDSGYNSNFPSDFPIVRPNPSNIAGTLYAADGGTASITALGALTQAGRGACVLFPAENIRAHVISICNAHSNIPYYWKLDTAKHSTLASTTYTHRVARNGRAGEILAVPAPPTSSEDMKTYPSDCVIAYRYRNIFWLPHAMNRRQDI
JGI26462J51802_1033366	JGI26462J51802_10333661	F086364	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVELLTDRKFGWHEDVLKDEWSYTGEFSFICVDPETFKCLTAERSNGSCTVSVVFPILXXXXAVQVVEYFLRXVQQA*
JGI26462J51802_1038573	JGI26462J51802_10385731	F104114	MERLRLWLSMTQDEKFAAAERELKDAIVARYDESADEWSLVRSIEDIAPSALAEVVIQTVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQAL