3300003604: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300003604
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093345 | Ga0040885
• Sample Name: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 62639124
• Sequencing Scaffolds: 19
• Novel Protein Genes: 22
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	4
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Desulfurobacteriales → Desulfurobacteriaceae	1
Not Available	8
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F021443	Metagenome / Metatranscriptome	219	Y
F038745	Metagenome / Metatranscriptome	165	Y
F043237	Metagenome / Metatranscriptome	156	Y
F051572	Metagenome / Metatranscriptome	144	N
F073601	Metagenome / Metatranscriptome	120	Y
F075483	Metagenome / Metatranscriptome	119	Y
F086364	Metagenome	111	N
F104114	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26464J51801_1000371	All Organisms → cellular organisms → Bacteria	12501
JGI26464J51801_1001932	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	5391
JGI26464J51801_1003765	All Organisms → cellular organisms → Bacteria	3310
JGI26464J51801_1003905	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	3211
JGI26464J51801_1004542	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	2820
JGI26464J51801_1005439	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2413
JGI26464J51801_1005508	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2384
JGI26464J51801_1007416	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1809
JGI26464J51801_1009077	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Desulfurobacteriales → Desulfurobacteriaceae	1474
JGI26464J51801_1010422	Not Available	1276
JGI26464J51801_1011462	Not Available	1147
JGI26464J51801_1011927	Not Available	1101
JGI26464J51801_1012565	Not Available	1039
JGI26464J51801_1012769	Not Available	1023
JGI26464J51801_1014178	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	919
JGI26464J51801_1016037	Not Available	808
JGI26464J51801_1017081	Not Available	758
JGI26464J51801_1017635	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	733
JGI26464J51801_1024168	Not Available	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26464J51801_1000371	JGI26464J51801_10003714	F073601	MLQAKATCLVMVLPAKRREGQRMFGLLHIAWRCAVKIMECGRIIRTLPVEKKALAGMGVLLQQG*
JGI26464J51801_1001932	JGI26464J51801_10019328	F013155	MELYQVAVIAIALANLAVTVWLLRLLIPIWQTLRKIVFVLDQYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQENFVRQMAERLQ*
JGI26464J51801_1001932	JGI26464J51801_10019329	F075483	MIELLAVQAVTTLALAFFVIKLRRELYPMIATAGPAYASFWIRSVDVLVVETPQFEASKVVIKVRWLFSEEIHMTYSFRVYDVAMHPLRRHHYVRWKAWMSGDDRYRCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKQFK*
JGI26464J51801_1003765	JGI26464J51801_10037653	F104114	MERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWFLSRSVEDIAPSALADSIIQAVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIEXFRDAVQAVVDLADIIAEKLPVVRSQVSLIKGGEVRWHTG*
JGI26464J51801_1003905	JGI26464J51801_10039053	F013155	MELYQTIVVAIALANLAVTVWLLRLLIPVWQTLRKVVFVLDQYDFDKLVQQFLSNEKPVAETIDVKVSEKRDEGYKELTVTRVYKKPLDPREIQENFVRQMAEKLQ*
JGI26464J51801_1004542	JGI26464J51801_10045424	F043237	MDLEKTAKYIAQLSRHGYKYAVIGELLRYDKELVKRLEYDGFVFYLCRLPSKKEVVSYCLPRTEGPFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINDCLNAIEKASEVKYPSPKLYLAHVNKLLRQLYSVLAHTYNDKERLSAIKRKVKHWVIEALKSQYGLKPKDAMLDYSRYVLKFSDVLRKKKSASVASATEGGRGRG*
JGI26464J51801_1005439	JGI26464J51801_10054392	F075483	MIELLAVQAITTAALAAVVIKLRRELWPAVAVAGPQNLGFWIRSVDVMALSGPQFDVDKIVVRVRWTLTEELFLIHKLRIYDVAMDPSVRHHYVRWKAWMQGDDRYECEVEKPRGLARLYNKAIDVFCKEKEPPKEVIILPSKVRKRRYKRMLRQLREARRNSAEKPT*
JGI26464J51801_1005439	JGI26464J51801_10054393	F013155	MELYQVITVVIAIINLAVTVWLLKLLLPLWQYLKKVVFVVDEYDFNRLINQFLNGEKPISETIHIKTTENKDEGYKEIIITRAYKKPLDPREIQENFVRQMAEKLQ*
JGI26464J51801_1005508	JGI26464J51801_10055082	F013155	MELYQVAVIAIALANLAVTVWLLRLLIPVWQTLRKVVFALDHYDFDKLARQFLGNEKPLAESVVVKTSQKEREGYREISIIRTYKKPLDTKEIQENFVRQMAERLQ*
JGI26464J51801_1005508	JGI26464J51801_10055083	F075483	MIELLAVQTITTLALAFFVIKLRRELYPMIAGAGPTHASFWIRSVDVLVVEAPQFEVSKTVIRVRWLLSEELFLIHSLRVYDVAMHPYRRHHYVRWKAWMQGDDRYKCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKQFK*
JGI26464J51801_1007416	JGI26464J51801_10074163	F051572	MTSRTHSGPFAEVRTFADVVLEGGCKKSLQFLNTHFDLCVLTVLIKTAPAGPMVKLRPEMVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA*
JGI26464J51801_1009077	JGI26464J51801_10090773	F021443	MKCLLNNGKLSFRFRDPYRIDYVTCYNYDYSYQINGILSFAXXDXVFKIXKQQERKSIILRKRKPIIHLLNYIDMLNFNSNSNKLAITFPLENKYKAQLIFNLYLHRSSYQRRYFKDLYKNNLKVIERENSCIIELEDDYASRIQPKNLNLTTMLMHILEKKEIDLIDVNGLIFYCVFLM
JGI26464J51801_1010422	JGI26464J51801_10104222	F038745	MDKAVMAVCGELMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELSLPPPALKALAEELGPEPRWLDALAASFFRLYLGVYRRRRVDGRDVFLALCFWAQKKRREDPWNPLWRAAELKPDRLYTEEEAREALKINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV*
JGI26464J51801_1011462	JGI26464J51801_10114621	F051572	MTSRTHSGPFAEVRTFADIVLEGGCKKSLQFLNAYFDLCVLAVLIKAAPAGPMVRLRPEMVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKL
JGI26464J51801_1011927	JGI26464J51801_10119272	F086364	MEREKIIAALETAFAEISGAEYEDEPITFAEFLESFAKFRDPDFPVYWIPWAVEEAVEELTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRISRD*
JGI26464J51801_1012565	JGI26464J51801_10125651	F021443	MKCLLNDERLTFRFGHSYVTCYNYDNSYYQINGILSFAVMDLVFKIVNQQKRKSIVLKKRKSIIHLLNYIDXLNFNSNSSKFNITLRLXNKYKTPLIYNLYLHRSSHRRSYYASFYKDSLNVIERENLCIIKLEDDYPSRIQPKNVNLIAVLMHILEQKEINMIDA
JGI26464J51801_1012769	JGI26464J51801_10127692	F021443	MKCLLNDERLTLVFKHSYITCFNYDYGYYQSNEILSFAVIDLXFKIISQQKRKKSIILKKRKPIIHLLNYIDILNFGSNSNRFDVAFYLKNKYKVPLIRNLYLYRSSHRKRYYEGFYKDRLEVIERENLCIIKLEDDYVNIIQPKNLNLVAMLMHILTKEEIDMLEGDGTIFYCIFLI*
JGI26464J51801_1014178	JGI26464J51801_10141782	F013155	MELYQVVVIAIALANLAVTVWLLRLLIPLWRYLQKVVFVVDEYDFNRLISQFLNGEKPMSETIHIKTTENKEEGYKEIIITRAYKRPLDPREIQENFVRQMAERLQ*
JGI26464J51801_1016037	JGI26464J51801_10160371	F021443	MKCMLNNKKLTFEFGHPYPPYVTCNNDSYYQINEILSFAVIDLAFKIISQQERKSIVLKKRKSIIHLLNYIDILNFNSNKFEITFPLENKYKALLMYNLFLYRSSHQERYYKDLYKNNLKVIENKNSCIIELKYDYSSRIQPKNVNLTTMLMRILAKKEIDTDLNGIIFYCIFLM*
JGI26464J51801_1017081	JGI26464J51801_10170811	F021443	MKCLLNSGKLTLIFSDPYLIDYVTCCNYDYNYYQTNGILSFAIMDLVFKIVSQEKVKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFSLKNKYKVQLIYNLYLYRSSHRERYYKNLYKNNLKVIERENLCIIELDDDYASRIQPKNVNLVTMLTHILENKEIDMIDGNGMIFYCVFLM*
JGI26464J51801_1017635	JGI26464J51801_10176351	F021443	MRYLLNDEKLTFTFTSSYVECHNYVYGYYQINEILSFAVLDLVLKIINQQKRKSITLKKRKPIIHLLNYIDILNFNFNSNKFVIAFSLENEYKRSLIFNLCLYRRRYKDFYKDNLKVIELKNLCIIRFERDYATRIQPKNSNLATMLMYILDKEEIDMIDGNGIIFYCVFLM*
JGI26464J51801_1024168	JGI26464J51801_10241681	F038745	TFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELGLPAPALKALAEELGPEPRWHDALAASFFRLYLGVYRRRRVDGRDVALALCLWAQKKRLEDPWNPLWRAAELKPDKLYTEEEARKALAINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV