3300003595: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_200m_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003595
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0091336 | Ga0008677
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_200m_DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 199922479
• Sequencing Scaffolds: 42
• Novel Protein Genes: 44
• Associated Families: 37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1
Not Available	12
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → Methylophaga aminisulfidivorans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Archaea	5
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp. Nsub	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011294	Metagenome / Metatranscriptome	292	Y
F011521	Metagenome / Metatranscriptome	290	N
F013764	Metagenome	268	Y
F026538	Metagenome	197	Y
F027751	Metagenome / Metatranscriptome	193	Y
F029271	Metagenome / Metatranscriptome	189	N
F031925	Metagenome	181	N
F035724	Metagenome	171	Y
F039110	Metagenome / Metatranscriptome	164	Y
F040645	Metagenome / Metatranscriptome	161	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26263J51726_1000169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	36534
JGI26263J51726_1000855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	12665
JGI26263J51726_1001323	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	9304
JGI26263J51726_1002072	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	6755
JGI26263J51726_1003129	Not Available	5121
JGI26263J51726_1004149	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	4245
JGI26263J51726_1005326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3600
JGI26263J51726_1005476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → Methylophaga aminisulfidivorans	3539
JGI26263J51726_1007196	All Organisms → cellular organisms → Bacteria → Proteobacteria	2974
JGI26263J51726_1007253	All Organisms → cellular organisms → Archaea	2955

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26263J51726_1000169	JGI26263J51726_100016931	F011521	VGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKXTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKYGCVPSKRLISKETWILIN*
JGI26263J51726_1000855	JGI26263J51726_10008551	F011294	YQPSPMMDKAIANLPAYSNVKKCSSDSVTDAIVIIKPILSYQPQSTILYGDLKVKIYQSKSNRETHPDNFIREMNISHWKVLRFDKVTMDHYVNEVYTKLLEQLILKIDALQINKNYPTNGSLCDLLSTLRKSKINLRH*
JGI26263J51726_1001323	JGI26263J51726_10013236	F013764	MVRTPSFFFFRTNSKNKQSSSLPPYSKRALVAVTVAVPMAFSLNLTLDSMASFMPLWGVIMINAIVIPSYMTFIIPKASKLLSSWLNSKASGVN*
JGI26263J51726_1002072	JGI26263J51726_10020723	F055778	MLSSVDFPEPELPTIKTISPCSIESDTSSRAFTWLSPSP*
JGI26263J51726_1003129	JGI26263J51726_10031296	F039110	VSKAVSKKADAKKTSAKLQLKALADGSHGIDGGIYTYKKGDTVTLSKKAHYDSMKELACFNEV*
JGI26263J51726_1004149	JGI26263J51726_10041493	F105201	MNVSFKFIIVMLYHDEELDEEELNKCFAKFDSKTIELILQEYKND*
JGI26263J51726_1005326	JGI26263J51726_10053265	F042010	KGENVVRAHGSIGNNERWKTPLGARLSRDDIVEKLKAILGSSSGLVA*
JGI26263J51726_1005476	JGI26263J51726_10054761	F027751	MAYLHTLRLIFFLLLPIYGQAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDITEGNQIKGYSVFARHIQIKNYPVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCK
JGI26263J51726_1007196	JGI26263J51726_10071963	F059331	LGTKAALKVPSENNLLNVFGILKAIKKASAKTPVPRKIAIRMSLRYPSILLNKVKNPNVPVDLSKFINHISLNFTSFV*
JGI26263J51726_1007253	JGI26263J51726_10072536	F096496	VNKKLVPRNIERNAILTKQQKIHLKSEKVDPKILNNIRRTLEKKLDGLTEDLDIIKNSKSLENWRLLQSEKFQELHKVLESTVMNFKPFYPFAVKTFSKKVGTKKFRMFWMDXSEESNFSTERIFEPSFALRKIKHYFNDDSFELLCWAVENNLIPCYKNNAKREEXFELAKNDELYFLKLQNTRTFTNEKKVQLKPEIEKERLENNMMWNYINKQYDMLNKKLYKKYGVKVIPKIETFDVFTLS*
JGI26263J51726_1008159	JGI26263J51726_10081594	F046847	MADEQITEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELADILGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKH
JGI26263J51726_1009610	JGI26263J51726_10096101	F058917	MNKLLKALEKEGTDIRSADMVVGGKLHHVYYRVMSGQDHDNALELSKKVKTVKEADGSTTDLTYYDDGLLRAHIIYFQLLTKDGERVFNNLVKVQWIKDTITYESSSYLSALMGLKSVSD
JGI26263J51726_1009653	JGI26263J51726_10096533	F031925	MNMRLNLEINRIQTRNLFFLIQYPKLNRNFVILIMTDQKTDETTLQFVAAFLKSQKGKYDDTHKHLDKILGSHGNQNEELVWFFKACMFQKRGKIEQSNDCLKIALMSFDYPPNITSPTMEFISSNSIQHHTPKLDYIV*
JGI26263J51726_1010836	JGI26263J51726_10108362	F073088	LKPEFQSTQKNVIENELNIFIDFKEIGTIVGVKIIKYRKIEEIHKI*
JGI26263J51726_1012639	JGI26263J51726_10126394	F096496	VNKKFVPTNIERNAILTKQQKIHLKSKKVNPKILNNIQRTLKKKLDGLTEDLDIIKNSKSLESWRSLQSEKFQELDEILQNTIMNFKPAYQYSVKTFSKKVGTKKFRMFWMDRSEKSNFSADRIFEPSFALRKVKHYLDDDSFELLCWAVENNLIPYYEKNAKREEDFELAKNDDQRISKLQTSRTFTNENKVRLKPEIEKERLENKIMWDYINKQFGMLNKKLYKKYGVTAIPHLEKSESVKS*
JGI26263J51726_1014647	JGI26263J51726_10146472	F013764	MSMLTPSFFFFRTNSKKSKSSGLPPYTKRALIAVTVAIPMAFGLNIPLNTFGTFVPVWGLIMINAIVIPSYMTFIIPKASKVFASWLNSTTVKGVN*
JGI26263J51726_1014764	JGI26263J51726_10147643	F043089	MTRXHENYLLWLLREIQKSDSLWKDELGYXVRLIQQTKENHL*
JGI26263J51726_1018301	JGI26263J51726_10183013	F013764	FRTNSKKSKSSGLPPYTKRALIAVTVAIPMAFGLNIPLNTFGTFVPVWGLIMINAIVIPSYMTFIIPRASKVFASWLNSTTVKGVN*
JGI26263J51726_1023269	JGI26263J51726_10232692	F077377	MKTLENFACFXQFKKTIQGMRATRKEFEDGQQDEVLTNQRDGRVYKKLKWTALHTSKCIQEAVFLLKEEEPSLSKEQLKKMLQAESVSIWFPYGVRKVEKALSVNGSAFHQRGWDRLGRGEPRFSGDSSTWPANH
JGI26263J51726_1023807	JGI26263J51726_10238074	F062497	MLKLKELITEDIDTDIKHNIDQIGSLQKEIDEIQKKLKPLKKEYGELVDNVLPILSKLGKEQLKTKNYIFKIIRKGYERQSFQYKEGFNKALGKVNNNIKKILEQILDDTKKMVDVKPKFQVSPIHEGFKEWIKSFTRKVLKKIIKPMKSIVSANKDLRKLI*
JGI26263J51726_1026276	JGI26263J51726_10262761	F078539	MINFNFIYRLDFLVSMTAIRPFTDRENFIVASTIMVVSEKMKSISRETRQSILQFIREERYPAVTDQDWKEIANGIDSHKKNIFGLMVKAFNESSEAPETFAGKSMANLDSSVKDDIESINFDELKE
JGI26263J51726_1026509	JGI26263J51726_10265093	F102126	MGKKGKDIQRGQDAKRLVEDPLYKEAFEDTKNHLIEMLLQTKISEETERDRIYITIKSLGLVDEHIRSVLTTGKLAE
JGI26263J51726_1026650	JGI26263J51726_10266501	F086271	MNQKLIIFSILSLAAIGFAANSFAVQDNVEIEGNLNPANRSEELYIVTIPVSNESKDIVFSIYYSGEIIFSKTSYIRAGTSSENFFVKFFPPLFEDNKTYAIEVKGPGLIGRELITIKEEFRSYSAEPVVPGPSDEEKRLAEA
JGI26263J51726_1027973	JGI26263J51726_10279733	F097392	MPDIMLLGVEKQVLSLEIDENPADNFPCMPSEGIDSEMRVLLYALLMGIFFDEAQSMEQLVLEYGPEGPWVFKLDFTITERLAEVEEDDIDGIALNWSQTGEMSALNMEASDLQEVLARFLFNLVHFCMLVRXEXVLSVFIYSE*
JGI26263J51726_1029162	JGI26263J51726_10291621	F066836	LTLYRSDTVVVDIPDISVGAKLLLMADCKHSWMYHGRKLALDTIMDDWLGPTLALVHCEECANPALLHLVSWRGNSLADRIYAIRLVDPRTRNTYLANINRDYCDLTRKASETEALISACSQNARLVLVTGPEMIVEAFSRDLFNPPV
JGI26263J51726_1032370	JGI26263J51726_10323701	F026538	MYKLNKDSIQRLSDNASIPQAEGNRDYQQFLQDVKVNGLT
JGI26263J51726_1034889	JGI26263J51726_10348892	F086271	MLRKKMNQKFIIFSVFSLIIIGFATSSFAVQDNVAIEGNLNPANRSEELYVVNVDPSSEMRKIIFSIYGSGEIIFSETSHLNSGGTSQNFYVKFFPPLFENNKKYTIEVKGPGL
JGI26263J51726_1038253	JGI26263J51726_10382532	F029271	MSKLSDLQDIKELLDVDFRKDKFXDNQYNNSPSFNYDAAESYVANIHQFXSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*
JGI26263J51726_1044709	JGI26263J51726_10447093	F042146	VLKENQVLQKKIIQNHLALQIIQNILEENLQKTHLQTQRKKALVLRERKNLRVEIVDLKTLALKNIVKKELNLKIF*
JGI26263J51726_1055366	JGI26263J51726_10553661	F059474	FKAIDRNDTKEFVSSEDPAIDIANSDIEAYKESHDIKHLSFKDGESPTVFHMGTITFMKFAEIKDKHISFDLGSDGQEINTNLFGLTADSLRHSLKKADNLPFPIKIERGRLSDTTMDXLARLGIVEELGNIALNLNGFGDDDEKK*
JGI26263J51726_1058899	JGI26263J51726_10588992	F075397	EVVSFFDLDQESQAAEWKDDDNADEFAFLIAENGEYWNLDLFMRTESGRYDGVMGLTNTSAIGIVLSCSGESAVIQCFS*
JGI26263J51726_1058928	JGI26263J51726_10589282	F013764	MSTPSFFFFRHSKENKSNSSLPPYSKRAIIAVTVAIPMAFGLNLPLSTFGTFMPVWGIIMINAIVIPSYMTFIIPRASKVFAFWLNPTIVKGVN*IEHNTNVNLLYR*
JGI26263J51726_1059593	JGI26263J51726_10595932	F035724	MIFKYPTLASPTTTLTFNNNPESPYEREVIKHNSSVQMEDGSFYVYSRSVTNYRYTISVVLTSESERDALESFYDSTVNGMEKTFSYTDPYSDSYTVRFENE
JGI26263J51726_1061582	JGI26263J51726_10615821	F071095	MSWXNSLLNKNKXKTIQVELLDETEKSIKVKYGIHTTHLPKKLISFNSRNEGGNVKVRLPMWL*
JGI26263J51726_1063329	JGI26263J51726_10633292	F027751	LELHNLLKNNMAYLHTPRLIFFLLLPIYAQAEEDLKYSYEHDSIGDKYDAEGDITFHTHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDIVEGNQIKGYSVFARHIQVKNYSVGFETKKITVDEGRHPDFSDYDWIFKFKVAS
JGI26263J51726_1065651	JGI26263J51726_10656512	F074447	GFEVYKESISSKLPEYSYKTIAQIIDEGLEKGFFIKMPARVQKKHDLKIRNIRPSEDLTVEFINSNINMISSFMKFLGKHK*
JGI26263J51726_1071498	JGI26263J51726_10714981	F059350	MNDNTERGVCYYETKQVWCTLHTHESIQDIISTLLHESLHNALALDIEKTDRREMN
JGI26263J51726_1072497	JGI26263J51726_10724971	F102126	MGNKGKEKQRGQDAERLVNDPLYKEAFVTTKELLIEMLLQTAISEETERDRIYITIKSLELIDQHIKSV
JGI26263J51726_1072818	JGI26263J51726_10728181	F040645	MKRVGIRSKIILLTLLILGGGFFVAPEILEEVAEVRYRRTLEDGRANLAERLEKDYKKLNLRNTPRLGDYFVFIYDKQSGKLMREYSFFPPRLIDDYNLAKNQFAINENNLNFIKTESIDKKVSIIVGFSESTSRNAVDGLERFFVLSYLFASIFVVLGILISTEIALRPVRR
JGI26263J51726_1076671	JGI26263J51726_10766711	F072236	NVSKILGGQMDKRMKELTYMWREMNDDWYRIQTNSPTVINKLKRRKDVEICGKTTRGSRVYWLIFRIQYKKPATARDSLYRLTNCGDNITVRNGVYRAETSTYGSVQKDVEDDK*
JGI26263J51726_1076971	JGI26263J51726_10769713	F105205	GEKKMRCKICDISHKNTGKYDLWLDNQLCRICGQIFDFFSWNGNNLGEYWRFKH*
JGI26263J51726_1077862	JGI26263J51726_10778622	F078308	NKIPKNIFVLISAKISNPFEIFFVNICVTLKTTATNIIKISIENISVEDVMMKNQKDNPAVTARDLNL*
JGI26263J51726_1078260	JGI26263J51726_10782604	F096498	MGMYDEINVDIKCPKCGSNEMNWQSKDYMCGLDMIDPDKVQEFYTHCDKCDTFITYSRGAENDESVIKCRAEPYSLDEVEKM
JGI26263J51726_1082137	JGI26263J51726_10821371	F063080	IPIIIAAILRALIISPKKIVAPIVIKIGFEKLIAVAWASGIRVKQVKPASIPIAPKKPLIKNNFVLFIFIAARPVECNIGSITIKAKRFLKKTTSRMCKFSDAFLIKITIIEKQTIDKIFKMIALVCEFCNLKNRIILTIMVSFPLCIHS*