NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003517

3300003517: Marine microbial communities from Antarctic Ocean - Station_363 -- 3.0 um



Overview

Basic Information
IMG/M Taxon OID3300003517 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0062048 | Gp0107576 | Ga0060305
Sample NameMarine microbial communities from Antarctic Ocean - Station_363 -- 3.0 um
Sequencing StatusPermanent Draft
Sequencing CenterJ. Craig Venter Institute (JCVI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size86297686
Sequencing Scaffolds6
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Antarctic Lakes And Southern Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Freshwater → Marine Microbial Communities From Antarctic Lakes And Southern Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)ocean biomemarine photic zonesea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Ocean
CoordinatesLat. (o)-60.00007Long. (o)141.23353Alt. (m)N/ADepth (m)2
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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