3300003510: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS857_Anemone_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003510
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0107596 | Ga0060295
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS857_Anemone_DNA
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28942771
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.933
  • Long. (^o): -130.01379
  • Alt. (m): N/A
  • Depth (m): 1543

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009034	Metagenome	324	Y
F013358	Metagenome / Metatranscriptome	272	N
F020717	Metagenome / Metatranscriptome	222	Y
F032684	Metagenome / Metatranscriptome	179	Y
F046847	Metagenome / Metatranscriptome	150	N
F057667	Metagenome / Metatranscriptome	136	Y
F069480	Metagenome	124	N
F078841	Metagenome / Metatranscriptome	116	N
F095618	Metagenome / Metatranscriptome	105	Y
F102126	Metagenome / Metatranscriptome	102	N
F105866	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
FS857DNA_1000357	Not Available	563
FS857DNA_1002220	All Organisms → cellular organisms → Bacteria → Proteobacteria	813
FS857DNA_1006291	All Organisms → Viruses → Predicted Viral	1004
FS857DNA_1011205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	810
FS857DNA_1013246	Not Available	820
FS857DNA_1013324	All Organisms → Viruses → Predicted Viral	1965
FS857DNA_1025034	All Organisms → cellular organisms → Archaea	1030
FS857DNA_1025633	Not Available	570
FS857DNA_1028230	Not Available	920
FS857DNA_1028256	Not Available	561
FS857DNA_1039714	Not Available	751

Sequences

Scaffold ID	Protein ID	Family	Sequence
FS857DNA_1000357	FS857DNA_10003571	F032684	MRLLCTLRVLALIDKFKSNFSLFKAEEVMFLPFGIITKNTLKNIIQPKITPTDKNANLDPKIFAKQNEITVPIISNITGR
FS857DNA_1002220	FS857DNA_10022201	F020717	MTRKQSEILMTSIVACTRFLALLETTQCWDFLRPHHILHENKDIRYFKDLNEQKDISISALKLMLPEN*
FS857DNA_1006291	FS857DNA_10062912	F102126	MSKKGKDIQKGKDAERLVSDPLYKTAFEDTKKALIAMLLNTAISEEVERDRIYITIKALGLVDEHIQSVINTGKLAEGPAGFYKDTNNY*
FS857DNA_1011205	FS857DNA_10112051	F095618	FFNTLYMFRKPGILLRTFSHRATNFRPNILVTNTPVISMTSNTKIIPEPGIVVSNLNMTSGRYFCGIRLLISSKKNLITMTLKARGIQKRRPEIK*
FS857DNA_1013246	FS857DNA_10132462	F069480	MRLVPNHIELIDRIYILQWCNTSKRVEGNAGQILDEAPKNKPYNTVKTVFFSVFKPVVFL
FS857DNA_1013324	FS857DNA_10133241	F009034	TAMDNNIMKTLKQLKDNKIELGGVIYRPYFIGDLPNNFGCLEYDGNDGIHEWFGYKGFCYIKDKR*
FS857DNA_1025034	FS857DNA_10250342	F078841	VCDKRGICSEKIFDRCLSELVKSKRIIKNERNRGNVSYYKPDWGVYENMINTDVIKQGTSTIRILAEVGRHENEVMQLTLLKMAFGNIMGMYASMTLITQQPGKAKTSAIITNTLKNTIPELLEMFSIALEKCGKNRSRILASLMDYRDGNMGGGWVLENHPDFKK*
FS857DNA_1025633	FS857DNA_10256331	F105866	ALEVKDIPYVRKDDTFKTWRERTNQMIQQQNNYVRLQEFQMLGMSDEYVIASMQMNLVEITNSEE*
FS857DNA_1028230	FS857DNA_10282302	F057667	MDIILDNWQAILFALLVAARAIVSFLPSENQAVKIFGWIDLIITAIVGGDRRRNKNKNKK
FS857DNA_1028256	FS857DNA_10282561	F046847	MADEHTNGKVETPKTENEVVISQSKLDNLIDKGFSKGANRAKSELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELINTLNGTIKGLEANNNEIKADMAVQKVVSENGIEDADYFKHLLA
FS857DNA_1039714	FS857DNA_10397141	F013358	MSVRPKSVCDSCSATYIIIHELPEDMYTEQYCPFCGEEHEDIEEDDLLNEDWD*