3300003454: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S5-DC05B

Overview

Basic Information

• IMG/M Taxon OID: 3300003454
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111425 | Gp0104218 | Ga0059320
• Sample Name: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S5-DC05B
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49265220
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine neritic zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Douglas Channel, British Columbia, Canada
• Coordinates
  • Lat. (^o): 53.6667
  • Long. (^o): -129.1333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F005243	Metagenome / Metatranscriptome	407	Y
F051941	Metagenome / Metatranscriptome	143	N
F053659	Metagenome / Metatranscriptome	141	Y
F056621	Metagenome	137	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
DC05B_1016378	All Organisms → cellular organisms → Bacteria	500
DC05B_1037831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410	541
DC05B_1038898	Not Available	556
DC05B_1048548	Not Available	583
DC05B_1113783	Not Available	578

Sequences

Scaffold ID	Protein ID	Family	Sequence
DC05B_1016378	DC05B_10163781	F005243	MSVKQINPELQDKDPQMSKEELAKRREEITAFYKDNIPHLEVQADYEMLLSAIEKARAERMQAQMYMAQQYAAQKEGGQPSTPEADEFKAAMEDAVNPK*
DC05B_1037831	DC05B_10378311	F053659	MTSVTEAKRKRQNRTVTMHLGNTLAEYQDMISTEEGVQELIRRVEIADSLNWGCLADGHKEGCPRRLHFTHHDGYTRWVKHFDGMRSLVTILRVRCLNCEAVLTIQPSFIVRYKRYDTDAIEKFATLLFITEDSYRMAGVSQALGLDTRQEGTWIALEETEQA
DC05B_1038898	DC05B_10388982	F051941	MATSFKNMPYDINTFEKSVYGVPTDSHSIVNAFYVGNFNNGGLTITVEVKVTTDGTRPYVSNSTNVFSTTLDGGQYLNLLTGPLVLEGGDSLIFTTNTTGRVEGTIAAMQVNREDQETTPTGSV*
DC05B_1048548	DC05B_10485481	F000918	MYKSRTQAWNEVMQSFKEDERRTAISQKLFGQDNLIGLTEEQREEYYKAI*
DC05B_1113783	DC05B_11137831	F056621	VTEKERFATAERVKKRIQEKHPHFRLIKRRDEIEKKLKVKNENLYAKHEQI*