NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003453

3300003453: Combined Assembly of Gp0111477, Gp0111476



Overview

Basic Information
IMG/M Taxon OID3300003453 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0075598 | Gp0111476 | Ga0059331
Sample NameCombined Assembly of Gp0111477, Gp0111476
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Davis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size118195343
Sequencing Scaffolds20
Novel Protein Genes24
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → Terrimonas ferruginea1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameVolcano-Associated Fumarole Microbial Communities From Mt. Erebus, Antarctica, That Are Thermophilic
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Volcanic → Fumaroles → Unclassified → Volcano-Associated Fumarole → Volcano-Associated Fumarole Microbial Communities From Mt. Erebus, Antarctica, That Are Thermophilic

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationMt. Erebus, Antarctica
CoordinatesLat. (o)-77.533333Long. (o)167.116667Alt. (m)N/ADepth (m)0 to .02
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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