Sample 3300003398

Overview

Basic Information
IMG/M Taxon OID	3300003398 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110179 \| Gp0089069 \| Ga0008471
Sample Name	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	11798878
Sequencing Scaffolds	17
Novel Protein Genes	18
Associated Families	18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	10
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	Joint Genome Institute, California, USA
Coordinates	Lat. (^o)	37.931388	Long. (^o)	-122.021761	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F002896	Metagenome / Metatranscriptome	522	N
F005683	Metagenome / Metatranscriptome	393	Y
F005950	Metagenome / Metatranscriptome	385	Y
F006898	Metagenome / Metatranscriptome	362	Y
F012397	Metagenome	281	Y
F013352	Metagenome / Metatranscriptome	272	Y
F017423	Metagenome / Metatranscriptome	241	N
F021640	Metagenome	218	Y
F024262	Metagenome	206	N
F033614	Metagenome / Metatranscriptome	177	Y

Scaffold	Taxonomy	Length	IMG/M Link
JGI26130J50248_100039	All Organisms → cellular organisms → Archaea	6739	Open in IMG/M
JGI26130J50248_100073	All Organisms → cellular organisms → Archaea	5007	Open in IMG/M
JGI26130J50248_100080	All Organisms → cellular organisms → Archaea	4781	Open in IMG/M
JGI26130J50248_100107	All Organisms → cellular organisms → Bacteria → Proteobacteria	4040	Open in IMG/M
JGI26130J50248_100221	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2754	Open in IMG/M
JGI26130J50248_100340	All Organisms → cellular organisms → Archaea	1991	Open in IMG/M
JGI26130J50248_100361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1904	Open in IMG/M
JGI26130J50248_100465	All Organisms → cellular organisms → Archaea	1531	Open in IMG/M
JGI26130J50248_100561	All Organisms → cellular organisms → Archaea	1347	Open in IMG/M
JGI26130J50248_100563	All Organisms → cellular organisms → Archaea	1340	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI26130J50248_100039

All Organisms → cellular organisms → Archaea

6739

Open in IMG/M

JGI26130J50248_100073

All Organisms → cellular organisms → Archaea

5007

Open in IMG/M

JGI26130J50248_100080

All Organisms → cellular organisms → Archaea

4781

Open in IMG/M

JGI26130J50248_100107

All Organisms → cellular organisms → Bacteria → Proteobacteria

4040

Open in IMG/M

JGI26130J50248_100221

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon

2754

Open in IMG/M

JGI26130J50248_100340

All Organisms → cellular organisms → Archaea

1991

Open in IMG/M

JGI26130J50248_100361

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales

1904

Open in IMG/M

JGI26130J50248_100465

All Organisms → cellular organisms → Archaea

1531

Open in IMG/M

JGI26130J50248_100561

All Organisms → cellular organisms → Archaea

1347

Open in IMG/M

JGI26130J50248_100563

All Organisms → cellular organisms → Archaea

1340

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI26130J50248_100039	JGI26130J50248_1000391	F012397	VSVRIKRNKNNKKGVRWNRILILIVLVTTLSLLSGPSLSFSEIKNEINVTPPLNWEPSPTNNSTTMIWFQNSTKSIFAIIKAPDDLVFPLFIAGPFMTGYLKYKGVLESADRLTFGHSNYGYRYFLNLSSPSKLLDSSSGLIPKNEFLSKIPEGYDVPFKGMLIITQKHKELYAIIFLNPKEKFDSMLNQIQPTLDSIQLSG*
JGI26130J50248_100039	JGI26130J50248_1000393	F100610	MMPVIISLFGNEDMDITEFRLTNKSVFYRCSYGECFRFIADKCMHCCANPIPDTEMHINYLRRLPDIKKAVTDLGI*
JGI26130J50248_100073	JGI26130J50248_1000733	F013352	MKYTLPGKLLTNSIDKYFSEYLAKNWHSASQFSRLPCLSIAIAGFLFSLMSSSTNAQIEVTVDENVSNPIFNSILSEDAEPRPDILYSTLNKDTIVGEVLNNFSYPIELVRITATVYDKNGIIVATGDKYVNDYLIKPGSRSGFDIFLDETLPSKSKYALTTSFEKSEDDKPEALQLSVGKNSKSSNTFRVLGEVMNQGKNDANAVKVSAIFYDEKHKVMDTDYVFTNPDIISPNKKAPFEFSFYVDNPEKIKSMAFNVQSDEFSLITDNGQNNTISQQ*
JGI26130J50248_100080	JGI26130J50248_1000801	F072513	FKRLIPEGRNSVIPNRRWGLDAVGVVVNHIMTAGIAAHAIIVNIMSHTAVIFSAIGYGFSCRYINFQIPPLK*
JGI26130J50248_100107	JGI26130J50248_1001074	F002896	MDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDXNPRLCKEGTIFHQXLYNECVKTFKDLLIHSDAQHH*
JGI26130J50248_100221	JGI26130J50248_1002213	F024262	CVFSLLDRKNLSPLPIILGSPIAIFPIYVTLSSAYDLAINESTELEFIVNALYYIFDGLMLVTAVIIILNLKKYDPFIFHWICITVGLILLVIGDVGYTYFSIISESLIEEYEWLWSILYAIGYLFLGIGIYWFDRIKNTLEDKKINVFLEKDEMDRLKNSSKNELIADTGTEFSEHIIGYEKFVDKLKDYLERSKEIKILFYDKYWLSDEEVNLILEKIQQGAFFTQIQVNILLPSSETIFKNLVSXNDNRHILVSFFDRTFSSDSLVFIFEEKYVAIIDRKPTSESVDSDTVFYGLITNXDTIVWPHITTFEKIWVLEKAVNM*
JGI26130J50248_100340	JGI26130J50248_1003404	F098876	QLSKYVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
JGI26130J50248_100361	JGI26130J50248_1003611	F088429	PQPETNASLNVPEPQPETNASLNVPEPQPETNASEIVTPRSIDLNITVGKDPIARSENQMVTVVALDPTTGKVLDRVFIKLEIKDPVGILVKNYTGTVGNLTRTFKIGENAIGTFIISATASQAGFQSTKSLPFQVQ*
JGI26130J50248_100465	JGI26130J50248_1004652	F005950	MTNGKNRIKVKIHRTSDYDDKYTGIRDFPDEKAMLXYGLSKVHKVIIRKYMKDDEFITRAQKTRGIKFDYEMELYD*
JGI26130J50248_100561	JGI26130J50248_1005613	F005683	SNPMEKSNGTKIMGILLVFGLVVYSIYFGQISFAEGVELKTVGKGAISCGNGEEVKGVRINFFVSYDEETPFAEWNMDHKELGSAGGMITNVKTSSDSFVLKGFEAFDSICDVETPSDVKLSGNCGEGTVRLVSDNGNKGTFASNVKCG*
JGI26130J50248_100563	JGI26130J50248_1005632	F006898	MYLILTTTLLLFSLFSLPGAFGAEMFKGLSFSIDIPNTWAYTETPEAPIERALGVSSYTSVVLVPVQFAELLIQEKGDIGMGNGSTAIVFAKASDYSVKNAPLDLYVKYRMNEDDSLNVTSQQDTTIGKEKAVRIDGNKNNNASNIRXLEYLLLXNDEPYVIRYIASMDDFERNLPAFELMVKSFTFGTNATDSKQT*
JGI26130J50248_100983	JGI26130J50248_1009831	F021640	LSPRFGFFKRKTSDNIQDKESEANSVYSVSNKELLEIVEKKKKVLEKDLIDNLEPTRNLVLECLDRLRKNADELEEQEIKAESPQFESLINTSKKILITSIKKESLIESYQIKSYEDAIKFKNNLELLINRFGQVGDSHNRILNEFMRKQINKFKSEFDNLSSLLKEVTKILSTKENQINSCIQCKADLILLDEKMNETRTKEVRLTELIKETQTIDKNIEEGKIQYEDLRKSKEFLNASKILAKIDDKKNEIAAFEKNMINKVSILSRPITKFSYQASK
JGI26130J50248_101671	JGI26130J50248_1016712	F057496	VYRNHTKVAEDHSSAYCKDEYVFGDKGEPLRLSHLIAFNVIEDAEHISGILTVEFDYYSDDDSIKYRDMHYSNPRLIKHIEGXPTVMKNIDAYLRXNLLESEYGLKL*
JGI26130J50248_101790	JGI26130J50248_1017901	F077360	ITSIYHMDSAIIMQVYEKSKTTAGLTLSDWTKKFWEWLFQLSDEANPVTVVGPSRPWRYGGRQPTQFQKQCMEKHGECVWFIAPAPYSEPNSVIQLNIPVGNWWFLVGPAIACSSQQLYPSLDSIDKVRKHVNEDISKTNELWTIFDGFSIPWYYIDNTNSFIEIKDVPIKESKNMLHQNLEEDTIQTLQCGYWNFIEPVEPGEHLLTIHSKS
JGI26130J50248_102147	JGI26130J50248_1021471	F017423	IKEKSNKLEEGTEIDVSNKKIGDGKIGIHFYDDLLEGFGSTDLEFAFSDFYKHRITDDLKFEYKTIQPPSLLEIDGHKTGSFHIMFSQKDEIDPISGEVQYWITFVGENGYMIEFLSIPENFDTPDNTEMRDRFISSINFLGLSNTTDTSGRISSVAMSY*
JGI26130J50248_102259	JGI26130J50248_1022591	F075479	MMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSXGHXLGTLSSQADDDKIKTGLID
JGI26130J50248_102548	JGI26130J50248_1025481	F037482	SVKLKSWATELPAVQVGFSPTCQMHGYSGLWQTEITYQVWRRIQFKDPDYAALSGKTILQISPDGDGGTGCFFGNFQVQIGSCYAEFEISDRVIDVKVLGDGSMKIRNGLQSRQRIRLEGDPPQRDGFEPDLRGAREIDLTIHCPPDEPGVLRGHLSSDVGGNIYSKATGKWYR*
JGI26130J50248_103254	JGI26130J50248_1032541	F033614	LRVTDAHTHGGDSLIPEYAGFFRTWNADSTALKLHGPHGTSFWLEFHASSFKVGDGSARPTLHPLSFNVKWEWSAVDPDIIYFINGNQLAKYNKATHVVTYLGPHQSVPLAYHVLVVGKDAWICAAAGSAGQNSYTQIYCLNPHDPSQHKFIDILKKTINGIAQHDPH

Scaffold ID

Protein ID

Family

Sequence

JGI26130J50248_100039

JGI26130J50248_1000391

F012397

VSVRIKRNKNNKKGVRWNRILILIVLVTTLSLLSGPSLSFSEIKNEINVTPPLNWEPSPTNNSTTMIWFQNSTKSIFAIIKAPDDLVFPLFIAGPFMTGYLKYKGVLESADRLTFGHSNYGYRYFLNLSSPSKLLDSSSGLIPKNEFLSKIPEGYDVPFKGMLIITQKHKELYAIIFLNPKEKFDSMLNQIQPTLDSIQLSG*

JGI26130J50248_100039

JGI26130J50248_1000393

F100610

MMPVIISLFGNEDMDITEFRLTNKSVFYRCSYGECFRFIADKCMHCCANPIPDTEMHINYLRRLPDIKKAVTDLGI*

JGI26130J50248_100073

JGI26130J50248_1000733

F013352

MKYTLPGKLLTNSIDKYFSEYLAKNWHSASQFSRLPCLSIAIAGFLFSLMSSSTNAQIEVTVDENVSNPIFNSILSEDAEPRPDILYSTLNKDTIVGEVLNNFSYPIELVRITATVYDKNGIIVATGDKYVNDYLIKPGSRSGFDIFLDETLPSKSKYALTTSFEKSEDDKPEALQLSVGKNSKSSNTFRVLGEVMNQGKNDANAVKVSAIFYDEKHKVMDTDYVFTNPDIISPNKKAPFEFSFYVDNPEKIKSMAFNVQSDEFSLITDNGQNNTISQQ*

JGI26130J50248_100080

JGI26130J50248_1000801

F072513

FKRLIPEGRNSVIPNRRWGLDAVGVVVNHIMTAGIAAHAIIVNIMSHTAVIFSAIGYGFSCRYINFQIPPLK*

JGI26130J50248_100107

JGI26130J50248_1001074

F002896

MDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGEISPVEARKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDXNPRLCKEGTIFHQXLYNECVKTFKDLLIHSDAQHH*

JGI26130J50248_100221

JGI26130J50248_1002213

F024262

CVFSLLDRKNLSPLPIILGSPIAIFPIYVTLSSAYDLAINESTELEFIVNALYYIFDGLMLVTAVIIILNLKKYDPFIFHWICITVGLILLVIGDVGYTYFSIISESLIEEYEWLWSILYAIGYLFLGIGIYWFDRIKNTLEDKKINVFLEKDEMDRLKNSSKNELIADTGTEFSEHIIGYEKFVDKLKDYLERSKEIKILFYDKYWLSDEEVNLILEKIQQGAFFTQIQVNILLPSSETIFKNLVSXNDNRHILVSFFDRTFSSDSLVFIFEEKYVAIIDRKPTSESVDSDTVFYGLITNXDTIVWPHITTFEKIWVLEKAVNM*

JGI26130J50248_100340

JGI26130J50248_1003404

F098876

QLSKYVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS

JGI26130J50248_100361

JGI26130J50248_1003611

F088429

PQPETNASLNVPEPQPETNASLNVPEPQPETNASEIVTPRSIDLNITVGKDPIARSENQMVTVVALDPTTGKVLDRVFIKLEIKDPVGILVKNYTGTVGNLTRTFKIGENAIGTFIISATASQAGFQSTKSLPFQVQ*

JGI26130J50248_100465

JGI26130J50248_1004652

F005950

MTNGKNRIKVKIHRTSDYDDKYTGIRDFPDEKAMLXYGLSKVHKVIIRKYMKDDEFITRAQKTRGIKFDYEMELYD*

JGI26130J50248_100561

JGI26130J50248_1005613

F005683

SNPMEKSNGTKIMGILLVFGLVVYSIYFGQISFAEGVELKTVGKGAISCGNGEEVKGVRINFFVSYDEETPFAEWNMDHKELGSAGGMITNVKTSSDSFVLKGFEAFDSICDVETPSDVKLSGNCGEGTVRLVSDNGNKGTFASNVKCG*

JGI26130J50248_100563

JGI26130J50248_1005632

F006898

MYLILTTTLLLFSLFSLPGAFGAEMFKGLSFSIDIPNTWAYTETPEAPIERALGVSSYTSVVLVPVQFAELLIQEKGDIGMGNGSTAIVFAKASDYSVKNAPLDLYVKYRMNEDDSLNVTSQQDTTIGKEKAVRIDGNKNNNASNIRXLEYLLLXNDEPYVIRYIASMDDFERNLPAFELMVKSFTFGTNATDSKQT*

JGI26130J50248_100983

JGI26130J50248_1009831

F021640

LSPRFGFFKRKTSDNIQDKESEANSVYSVSNKELLEIVEKKKKVLEKDLIDNLEPTRNLVLECLDRLRKNADELEEQEIKAESPQFESLINTSKKILITSIKKESLIESYQIKSYEDAIKFKNNLELLINRFGQVGDSHNRILNEFMRKQINKFKSEFDNLSSLLKEVTKILSTKENQINSCIQCKADLILLDEKMNETRTKEVRLTELIKETQTIDKNIEEGKIQYEDLRKSKEFLNASKILAKIDDKKNEIAAFEKNMINKVSILSRPITKFSYQASK

JGI26130J50248_101671

JGI26130J50248_1016712

F057496

VYRNHTKVAEDHSSAYCKDEYVFGDKGEPLRLSHLIAFNVIEDAEHISGILTVEFDYYSDDDSIKYRDMHYSNPRLIKHIEGXPTVMKNIDAYLRXNLLESEYGLKL*

JGI26130J50248_101790

JGI26130J50248_1017901

F077360

ITSIYHMDSAIIMQVYEKSKTTAGLTLSDWTKKFWEWLFQLSDEANPVTVVGPSRPWRYGGRQPTQFQKQCMEKHGECVWFIAPAPYSEPNSVIQLNIPVGNWWFLVGPAIACSSQQLYPSLDSIDKVRKHVNEDISKTNELWTIFDGFSIPWYYIDNTNSFIEIKDVPIKESKNMLHQNLEEDTIQTLQCGYWNFIEPVEPGEHLLTIHSKS

JGI26130J50248_102147

JGI26130J50248_1021471

F017423

IKEKSNKLEEGTEIDVSNKKIGDGKIGIHFYDDLLEGFGSTDLEFAFSDFYKHRITDDLKFEYKTIQPPSLLEIDGHKTGSFHIMFSQKDEIDPISGEVQYWITFVGENGYMIEFLSIPENFDTPDNTEMRDRFISSINFLGLSNTTDTSGRISSVAMSY*

JGI26130J50248_102259

JGI26130J50248_1022591

F075479

MMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSXGHXLGTLSSQADDDKIKTGLID

JGI26130J50248_102548

JGI26130J50248_1025481

F037482

SVKLKSWATELPAVQVGFSPTCQMHGYSGLWQTEITYQVWRRIQFKDPDYAALSGKTILQISPDGDGGTGCFFGNFQVQIGSCYAEFEISDRVIDVKVLGDGSMKIRNGLQSRQRIRLEGDPPQRDGFEPDLRGAREIDLTIHCPPDEPGVLRGHLSSDVGGNIYSKATGKWYR*

JGI26130J50248_103254

JGI26130J50248_1032541

F033614

LRVTDAHTHGGDSLIPEYAGFFRTWNADSTALKLHGPHGTSFWLEFHASSFKVGDGSARPTLHPLSFNVKWEWSAVDPDIIYFINGNQLAKYNKATHVVTYLGPHQSVPLAYHVLVVGKDAWICAAAGSAGQNSYTQIYCLNPHDPSQHKFIDILKKTINGIAQHDPH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003398: Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences