3300003344: Upper troposphere microbial communities - SEAC4RS-RF7-005

Overview

Basic Information

• IMG/M Taxon OID: 3300003344
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085222 | Ga0007668
• Sample Name: Upper troposphere microbial communities - SEAC4RS-RF7-005
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1715956
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: USA and various oceans
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032247	Metagenome / Metatranscriptome	180	Y
F032274	Metagenome / Metatranscriptome	180	Y
F043390	Metagenome / Metatranscriptome	156	N
F045749	Metagenome / Metatranscriptome	152	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25857J50181_10150	Not Available	779
JGI25857J50181_10217	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	634
JGI25857J50181_10286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	560
JGI25857J50181_10361	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25857J50181_10150	JGI25857J50181_101502	F045749	YFGGRDEAGEYFENLFRELELHAGAIKTFILNHTISEDFKPSGRAPDTVSRRLMIQXSVSPEQSLVEDLINKHECGVVNGRILDVTWFKSLCEGEGDVLPQSRTLAHILNDMGYQQITGRRIKIKKTRENHYIWFKAKKGVDEESVKNEVQDFFGNDLDQVPF*
JGI25857J50181_10217	JGI25857J50181_102172	F043390	MSYQVKTEDLQKVISLTLTAEQLETIAGALELYCIGLAEHNDPHLKYAADAQDAIIDVLESIF
JGI25857J50181_10286	JGI25857J50181_102861	F032247	MTIDDAIYNLEAYGRHMGNRFIAINHDRSYELLLKNAVIILEYAGMIERDTVKAWAHCNVRIINRXAERVDYTTGL*
JGI25857J50181_10361	JGI25857J50181_103611	F032274	MQGFFDFTEQIEIVKHKRHKTLWTPKHDWRVAPKIIVTDEYIALDKKLEPIENELFDLIKQMPLAVEEKIKGKICVVNSGHTVDAELINRVRVLRKEASAIGKQLDELF