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Sample 3300003288
3300003288: Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_44 (Metagenome Metatranscriptome, Counting Only)
Overview
| Basic Information |
|---|
| IMG/M Taxon OID | 3300003288 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0110148 | Gp0072768 | Ga0007428 |
| Sample Name | Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_44 (Metagenome Metatranscriptome, Counting Only) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
|---|
| Total Genome Size | 5529794 |
| Sequencing Scaffolds | 12 |
| Novel Protein Genes | 15 |
| Associated Families | 15 |
| Dataset Phylogeny |
|---|
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp. | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
|---|
| Name | Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa |
| Alternative Ecosystem Assignments |
|---|
| Environment Ontology (ENVO) | grassland biome → rhizosphere → soil |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere |
| Location Information |
|---|
| Location | Hopland, California, USA |
| Coordinates | Lat. (o) | 38.972988 | Long. (o) | -123.116539 | Alt. (m) | N/A | Depth (m) | N/A |
| Location on Map |
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Associated Families
Associated Scaffolds
Sequences
