3300003286: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 78 (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information

• IMG/M Taxon OID: 3300003286
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053071 | Gp0061231 | Ga0006877
• Sample Name: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 78 (Metagenome Metatranscriptome, Counting Only)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2286898
• Sequencing Scaffolds: 31
• Novel Protein Genes: 33
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
Not Available	21
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula maiorica	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Mobiluncus → Mobiluncus curtisii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp.	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter dehalogenans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001346	Metagenome / Metatranscriptome	718	Y
F005410	Metagenome / Metatranscriptome	401	Y
F007465	Metagenome / Metatranscriptome	350	Y
F015068	Metagenome / Metatranscriptome	257	Y
F015698	Metagenome / Metatranscriptome	252	Y
F016371	Metagenome / Metatranscriptome	247	N
F016476	Metagenome / Metatranscriptome	247	Y
F019606	Metagenome / Metatranscriptome	228	Y
F020652	Metagenome / Metatranscriptome	222	Y
F022827	Metagenome / Metatranscriptome	212	Y
F029356	Metagenome / Metatranscriptome	188	Y
F032561	Metagenome / Metatranscriptome	179	Y
F033437	Metagenome / Metatranscriptome	177	Y
F037099	Metagenome / Metatranscriptome	168	Y
F046221	Metagenome / Metatranscriptome	151	Y
F048049	Metagenome / Metatranscriptome	148	Y
F055087	Metagenome / Metatranscriptome	139	Y
F059150	Metagenome / Metatranscriptome	134	Y
F065459	Metagenome / Metatranscriptome	127	Y
F068527	Metagenome / Metatranscriptome	124	N
F068857	Metagenome / Metatranscriptome	124	Y
F068858	Metagenome / Metatranscriptome	124	Y
F070926	Metagenome / Metatranscriptome	122	N
F074057	Metagenome / Metatranscriptome	120	Y
F076696	Metagenome / Metatranscriptome	117	N
F086728	Metagenome / Metatranscriptome	110	Y
F088037	Metagenome / Metatranscriptome	109	N
F091395	Metagenome / Metatranscriptome	107	Y
F096460	Metagenome / Metatranscriptome	104	N
F098747	Metagenome / Metatranscriptome	103	N
F098814	Metagenome / Metatranscriptome	103	N
F100552	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0006877J48918_10001	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1142
Ga0006877J48918_10018	Not Available	549
Ga0006877J48918_10019	Not Available	590
Ga0006877J48918_10031	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	598
Ga0006877J48918_10038	Not Available	660
Ga0006877J48918_10077	Not Available	825
Ga0006877J48918_10087	Not Available	619
Ga0006877J48918_10090	Not Available	625
Ga0006877J48918_10172	Not Available	622
Ga0006877J48918_10181	Not Available	807
Ga0006877J48918_10203	Not Available	733
Ga0006877J48918_10235	Not Available	502
Ga0006877J48918_10241	Not Available	582
Ga0006877J48918_10355	Not Available	597
Ga0006877J48918_10362	Not Available	563
Ga0006877J48918_10487	Not Available	515
Ga0006877J48918_10524	Not Available	534
Ga0006877J48918_10555	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula maiorica	1021
Ga0006877J48918_10620	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula maiorica	2949
Ga0006877J48918_10724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Mobiluncus → Mobiluncus curtisii	563
Ga0006877J48918_10806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp.	508
Ga0006877J48918_10885	Not Available	586
Ga0006877J48918_10957	Not Available	1040
Ga0006877J48918_10959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	698
Ga0006877J48918_11037	Not Available	707
Ga0006877J48918_11471	Not Available	587
Ga0006877J48918_11480	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera	529
Ga0006877J48918_11481	Not Available	623
Ga0006877J48918_12212	Not Available	581
Ga0006877J48918_13808	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	746
Ga0006877J48918_13818	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter dehalogenans	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006877J48918_10001	Ga0006877J48918_100011	F065459	EVHGTVNLVNGSEPGTLIRWQTLKREAGGERRGIGPGTQASFSTGEWAERFDLEGPKNPKGERRLNHRKKTLD*
Ga0006877J48918_10018	Ga0006877J48918_100181	F100552	LPPACTALSTAFGSAGRSAFQLPGCWFVQPPDQSFLTRRSLCFSQTEPDARNGLSLARNGYPFQGLHCGVKVPGLLLRAPC*PAVLPVRPFCSTACTGSPRFRPLRRFGPAAKLPANSIGYSSGFRSPSGLLHPAGSKRSTESAAARLAFRTRPISSRSPQPVLFLGLATDHRSWLATFPEAC
Ga0006877J48918_10019	Ga0006877J48918_100191	F019606	VPRSELLAKNQRVISRVLIRVGQKPMRGAEEKVPRFLRMPCSGRACRLESELFEGSLG
Ga0006877J48918_10031	Ga0006877J48918_100311	F098747	GWHNNTEPVQSRLSDQHGGATRQATRPEKTFQVICCPASPTTGMHGIELRGRERRTFRLSAPRQPFSPVNGSKLSDSPQLSLPLGTGCSCRPFAHLQRPPLSRKPFQGQSSWPVTSHPNQPVPLPVRPFCSATGPGSPRFPAASTLLARCSVSGLPDLRLLQPPLPFGTFASLWIKAFNWTRRSSARLPNPPDTSRSPQ
Ga0006877J48918_10038	Ga0006877J48918_100381	F020652	FVPRPACTARTWHPETV*REPFAPRCRFYPASDRCSGACPLFSVPVEACLSIRPFALRRRRLTFRSVPTAGSTFLAYIFEAIPKSPLDPFGPVLPPPLRLFVAVRGAFNVRNPLSSPIPELPDCDQAFAPLQDLSIPRARSAQLDSKQRSLPLRVARSSFAPRCARNNFLS*LRNGSSFRIRYFPPGSLSFEHLGTKLSATSPRDREVLEGSDSLITVK
Ga0006877J48918_10077	Ga0006877J48918_100772	F032561	ASGVSILTISQYSRCCILRLPQRPTLQLSLAVASSWLRRLENPRLSSAVLHSGSTGGQLPGSDRRCIDQLDRLRTSGLRRLFRSSDRPVAIPFDSRRTILPPARPMINLRLASTPSFGSAGSTSGFRRLLLLPPGWLRLRFSPAVSPSGFTGCESFNFR*
Ga0006877J48918_10083	Ga0006877J48918_100831	F070926	ENCGAFSSAPRIGFWPMRINAREMTRSFSARSSDLGTAFYSPAATVPFRRPPRQDRRSWPIPSIQLRTLPQARSVWNSLPLPHSAVRGRSALPTRCPIPDSKFPDVHRLPLPFGIFQSLRIKALCRRQSLGKLTLADSPIFLRSPTAQLSLIVLAAGSSFRIRYRPPGSLLSE
Ga0006877J48918_10087	Ga0006877J48918_100871	F022827	DQGCHPRYLQRFRRSLSTSPFPARSSPARTSQPAFRPAARCPEGYSLVPRRALRPHPGVEVSLAFSLDPVPHGFRFGIRAIPAVPTRVVSFKLRALPHRLEPACASYPAYSPCGSIRLALRHFLLDLPRPCRSPSPLAGFQLRSCGPAVFPPSQLPAQFYLSRSSAGSSRFLPNSRPTASTRLFGTHCLRRELLPTFRISRIPNRK
Ga0006877J48918_10090	Ga0006877J48918_100901	F005410	PVARFQVTYPTIQLPSGMHGRSCAIRVIVRLGPSLPATEFRPSRINAPDRASQLTPVRNPSLGTTFRSLETTARYRATFPRSKLLAYPFGSTLRSRRTRSITPLLHAVRLAPNSANSTRATRCPVPSKRPRLFSNSPLPLGVFTPLPIKAFKLTTSREAHRIETPDLPRSPLRPVFNIQQRINVPDSLRPVRLIV*
Ga0006877J48918_10172	Ga0006877J48918_101721	F068858	ASQGAETGGRIHQFLWRRSHAVSDAMQELSGKGREETALSRVK*
Ga0006877J48918_10181	Ga0006877J48918_101811	F068527	WRFNLDDQVVQPAVASPGYPSGEPAAFAAVPSSGCADALLSACAYLPALRLDRRPTSPARIGVFSPGSTGGKHPARTVCYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTFGSRRRLLQLPACAFRCCNSPACAGCCPHLPNRW*
Ga0006877J48918_10203	Ga0006877J48918_102033	F029356	MTTLILNSRGKDGGRRPARVAGRGEATTRKLDRLPGEIPGTEVRKIRAEAKAVHLL
Ga0006877J48918_10235	Ga0006877J48918_102352	F001346	VKTFREVSDVKNDTADLWTKGNLRVKRRDPWHRANALLKAVADPALSGGDADKKTQTCLDLVRKPVAQPPVQAS*
Ga0006877J48918_10241	Ga0006877J48918_102411	F059150	FEEQRAERKRSEPGTLIRSRNYSNRAGGGERRAIGRIREVSLSVSGRVDTLIRKGAKGPEGEWRSGADRDCGTEVE*
Ga0006877J48918_10355	Ga0006877J48918_103551	F076696	RRPSGSARSPAVMPGRNAAGMPLADSFSCSPPQLLFCVGLTLQSASADRHTRSLCLATAFRSPPRLRPFGRLHEGSMFPACRFGSLPNPASGPFGSPLPASLRFCLAYAGPIHAAFPLPDADLDFPDRYSASAPLQDVSRRFNASASASLEGSPLPATRFPFAPRCRLRFTIARFGSSFPVRLRLLGLLFLLTSWNRR
Ga0006877J48918_10362	Ga0006877J48918_103621	F015698	MLPGAPQSLSATGPVARNGLSLPWNDFHFRGFHSRINVPGLPLRNPHGHSQARSAFCSTAGCGSPRLRPSPCFCPSLACFRARSASPPASTPLRGFYPPLDQSVLPDSLPISPPSGCARFPFAPRFLLSITSRWKRINVPGSLRFRRLAVPQTPK
Ga0006877J48918_10487	Ga0006877J48918_104871	F015068	SAAETLEIETGCGERREIGRIRKAGRKTANPAERFDPAGGKTPQGEWRLEARSSDEPQRLQRARSYEAAQAGANRFR*
Ga0006877J48918_10524	Ga0006877J48918_105241	F016371	MPRVFYYSAPGNYATTQGTVNIPAAGYYYNVPLYTVPAPVNPAPAQGSTYSYSSFYYPRGGASTEGGGGAYEGGDERPSGAYVSGDNEDSPDW*
Ga0006877J48918_10555	Ga0006877J48918_105551	F037099	PTFLELLGNNLKAITDLKGLQDQVVQDTARQFGLPLAADITGLFERLHSTEQNILNRLQAIEDRLKAIETKH*
Ga0006877J48918_10620	Ga0006877J48918_106204	F007465	MPSTTDSKTKPSSSVATDPSTMMASFWTQWLEQSSRGTQALLEAMQTVGDPQQIQRRWLDAVSQSLDDFMRTPTFLELLGNNLKTITDLKGMQDEVIQDTARHFGLPLAADITGLFERLHSTEQNILNRLQAIEEQLKGIETKH*
Ga0006877J48918_10724	Ga0006877J48918_107241	F091395	MHGTEHRIPKRRTPRSSTPQNPFSPGPGSMPCRAPQPFLFFRTGPPLVTTFRSPTTAPAFRGFHSRINVPGLLLHVLTCRFRCPFGLPAPPPALVCPRTGRFYAEKPVAASATGSPNCSTSLRSPLGLLRPSGSKRSADLAARWPAFRTRPISVRSPQPAAILLDLDCGSPFPVRYVS
Ga0006877J48918_10806	Ga0006877J48918_108061	F055087	MTKPAIEAQEQYVHNTQEMTKRLAAAQERNLKYTQSIFESTIALLKSHMEDTRFLVEQWGPQGSSQTSESYMNLFSAPFTAYQQMLKGVETASKQMFEGVETASKQSFESFRKATE
Ga0006877J48918_10885	Ga0006877J48918_108851	F088037	VPQSATCVAVLFGADISKGLSLAPGGFLLPSCRWKVNAPGYFLQRPAEASIKPVRLTASPLSSVCPVLGGIIAISPLPDFVPAFLAATRSPLPSGDFYVPLRIAAFDSACRSKAHLFELPDFPSLPAGHSLLNDQPPDHRSRIATSHQVRLFR
Ga0006877J48918_10957	Ga0006877J48918_109571	F016476	AT*RKCSCRPSEYSVLLLDPRRYRPKSSSSGIGRSFRV*HPLKYRPYWFCDPAVPLALAPAVRFSILRAAADDCLGYRPRPLVELHLPLESYPAVPTRPPRRPSPLMGFCSLQHIRNPRSTFREPSQPAKFRLQGLATLLTVCSLESRAGFVSHRRRSWDSPFGGVLSLQASAAFRPGRTHVPLAQRYFRRRSVRPARRASVSGFKPVGTALRPCGGLTRQSPAPPLGFAPLGFTCEDLAPDSSGTPLTCLASPDDYSPSRPTPQSVDQPSPCLARPVPKHRPAEATLVGFLHLPVPDHLSSPVPGLWNSPFVASCITADSPTIFGHRKNPAEAVQDRPWVPSIAT
Ga0006877J48918_10959	Ga0006877J48918_109591	F096460	RRQSRMKNTVTRVLVLLAVLVAFGASNLSAAVTPCPASSTLDVLISSFNTLANACSSQDKIFWGFTYTPGPNASAATAVQASLIFQQLAGVDIHGWNFGSNWSQAGVGGALANFTLSFQIEVCPSGDPCAGAVIPGTIINLADAVYAPSSVFTPGPETVTWSNGATVTLTNGSPGPLPPGGNIGLGAGTLGPITVTDNFSGMGDITQTTDRFYETVPPTTPEPATLGLLLSG
Ga0006877J48918_11037	Ga0006877J48918_110371	F086728	DQMSQSVAQQTGLPLAADVTGVFERVHSAEQTILKQLAKLDDRLKAIEKTLNSGPAEKNPKRKRATTKEDIGDDAPNDPAD*
Ga0006877J48918_11471	Ga0006877J48918_114711	F068857	LRILSLEDGNGLSTVNIPGGVRNAPEDGSWRPNGLVEEFRISAKR*
Ga0006877J48918_11480	Ga0006877J48918_114802	F046221	MSSDKSSEGGSSAADPARDFLEFWKXYFEQTAIQTRILLEGMQGGKSLDHKSLDQLHTQGLESLTQCLDGFMRTPAFLEVLKQSLKRMID
Ga0006877J48918_11481	Ga0006877J48918_114811	F048049	ERKDKVNERMVTYFSILLGHLLSWLVVAAAALYVAVVLVIYRTAGPRYRLNFNLAEPARSTRQLGVWLGVKVLEACVRMSKSTLNTLLEASAEVGEWFMRRNPSVQENIRSRFLV*
Ga0006877J48918_11533	Ga0006877J48918_115331	F098814	NQRCSPPACTASNMHSESSSVLPVGSPTTGFPSCRINAARRAAY*F*TGLSARNDLSLARDDLRSRGSHHEVKVPGLLLRFRISRLFRPVRLLLHYQFRLAPVSAASTLQTRCGLAARLCRLRFQLPLPFGNVTSLGIKASADFAASQPAFRNCPISVRSPQPYSIARSGCGSSFPVRYCFVGLLFLK
Ga0006877J48918_12212	Ga0006877J48918_122121	F068858	VETGGRIHRFLWRRSRAVSDAKQELSGKGERETVPSRVK*
Ga0006877J48918_13808	Ga0006877J48918_138082	F074057	MKTEHSGRIETLKNAIVAAINATGLKGAGEASSTALKTVRKAFTKSIHGVMVVAKEPEPAWLSNN*
Ga0006877J48918_13818	Ga0006877J48918_138181	F033437	PDATLRGMRSSRSHGGIAPAVAGWSLLSEVFSPGSDAPCRERHAGRGADTPVSSELRVGTVATGTAPAFGRSLAPRYGSDLLTLRLRSHYSWATRFFEPLT*