Basic Information | |
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IMG/M Taxon OID | 3300003284 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0110115 | Gp0061288 | Ga0006773 |
Sample Name | Avena fatua rhizosphere microbial communities - H3_Bulk_Litter_16 (Metagenome Metatranscriptome, Counting Only) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 2241957 |
Sequencing Scaffolds | 23 |
Novel Protein Genes | 24 |
Associated Families | 22 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 19 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 1 |
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp. | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies |
Type | Host-Associated |
Taxonomy | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → rhizosphere → soil |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere |
Location Information | ||||||||
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Location | Hopland, California, USA | |||||||
Coordinates | Lat. (o) | 38.97364 | Long. (o) | -123.117453 | Alt. (m) | N/A | Depth (m) | 0 |
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