Basic Information | |
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IMG/M Taxon OID | 3300003269 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0099541 | Gp0089018 | Ga0008461 |
Sample Name | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 101495762 |
Sequencing Scaffolds | 35 |
Novel Protein Genes | 37 |
Associated Families | 35 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 5 |
Not Available | 19 |
All Organisms → cellular organisms → Archaea | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 3 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Polaribacter | 1 |
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster | 1 |
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Dermocarpellaceae → Stanieria → Stanieria cyanosphaera | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → intertidal zone → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | Monterey Bay, California, USA | |||||||
Coordinates | Lat. (o) | 36.25 | Long. (o) | -122.2099 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000245 | Metagenome / Metatranscriptome | 1468 | Y |
F000711 | Metagenome / Metatranscriptome | 925 | Y |
F005337 | Metagenome / Metatranscriptome | 404 | Y |
F005685 | Metagenome / Metatranscriptome | 393 | Y |
F008236 | Metagenome / Metatranscriptome | 336 | Y |
F009300 | Metagenome | 320 | Y |
F011096 | Metagenome / Metatranscriptome | 295 | Y |
F011338 | Metagenome / Metatranscriptome | 292 | N |
F011529 | Metagenome / Metatranscriptome | 290 | Y |
F015654 | Metagenome / Metatranscriptome | 253 | N |
F016590 | Metagenome | 246 | Y |
F016596 | Metagenome / Metatranscriptome | 246 | Y |
F016736 | Metagenome / Metatranscriptome | 245 | Y |
F019658 | Metagenome / Metatranscriptome | 228 | Y |
F035977 | Metagenome | 171 | Y |
F040871 | Metagenome / Metatranscriptome | 161 | Y |
F045374 | Metagenome / Metatranscriptome | 153 | Y |
F051164 | Metagenome / Metatranscriptome | 144 | N |
F051448 | Metagenome / Metatranscriptome | 144 | N |
F056739 | Metagenome / Metatranscriptome | 137 | Y |
F057444 | Metagenome | 136 | N |
F060127 | Metagenome | 133 | Y |
F063661 | Metagenome / Metatranscriptome | 129 | Y |
F066836 | Metagenome / Metatranscriptome | 126 | N |
F070883 | Metagenome / Metatranscriptome | 122 | N |
F077377 | Metagenome / Metatranscriptome | 117 | N |
F078711 | Metagenome / Metatranscriptome | 116 | N |
F089037 | Metagenome / Metatranscriptome | 109 | Y |
F090256 | Metagenome | 108 | N |
F091417 | Metagenome | 107 | N |
F098669 | Metagenome / Metatranscriptome | 103 | N |
F099286 | Metagenome / Metatranscriptome | 103 | N |
F099541 | Metagenome | 103 | Y |
F100932 | Metagenome | 102 | N |
F105503 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
JGI26112J46591_1000364 | All Organisms → cellular organisms → Bacteria | 9203 | Open in IMG/M |
JGI26112J46591_1000798 | All Organisms → cellular organisms → Bacteria | 5992 | Open in IMG/M |
JGI26112J46591_1005749 | Not Available | 1879 | Open in IMG/M |
JGI26112J46591_1007854 | Not Available | 1536 | Open in IMG/M |
JGI26112J46591_1008623 | All Organisms → cellular organisms → Bacteria | 1439 | Open in IMG/M |
JGI26112J46591_1010199 | All Organisms → cellular organisms → Archaea | 1296 | Open in IMG/M |
JGI26112J46591_1011409 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1210 | Open in IMG/M |
JGI26112J46591_1013684 | Not Available | 1080 | Open in IMG/M |
JGI26112J46591_1014698 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Polaribacter | 1031 | Open in IMG/M |
JGI26112J46591_1016404 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | 965 | Open in IMG/M |
JGI26112J46591_1016709 | Not Available | 953 | Open in IMG/M |
JGI26112J46591_1018459 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 897 | Open in IMG/M |
JGI26112J46591_1019259 | Not Available | 873 | Open in IMG/M |
JGI26112J46591_1019633 | Not Available | 863 | Open in IMG/M |
JGI26112J46591_1020915 | Not Available | 830 | Open in IMG/M |
JGI26112J46591_1022010 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster | 805 | Open in IMG/M |
JGI26112J46591_1022510 | Not Available | 793 | Open in IMG/M |
JGI26112J46591_1023156 | Not Available | 779 | Open in IMG/M |
JGI26112J46591_1024764 | Not Available | 747 | Open in IMG/M |
JGI26112J46591_1025043 | Not Available | 742 | Open in IMG/M |
JGI26112J46591_1025722 | Not Available | 730 | Open in IMG/M |
JGI26112J46591_1027119 | All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 707 | Open in IMG/M |
JGI26112J46591_1031081 | All Organisms → cellular organisms → Bacteria | 651 | Open in IMG/M |
JGI26112J46591_1033548 | All Organisms → cellular organisms → Bacteria | 622 | Open in IMG/M |
JGI26112J46591_1034113 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Dermocarpellaceae → Stanieria → Stanieria cyanosphaera | 615 | Open in IMG/M |
JGI26112J46591_1035981 | Not Available | 595 | Open in IMG/M |
JGI26112J46591_1040834 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | 552 | Open in IMG/M |
JGI26112J46591_1040976 | Not Available | 551 | Open in IMG/M |
JGI26112J46591_1041782 | Not Available | 545 | Open in IMG/M |
JGI26112J46591_1042660 | All Organisms → cellular organisms → Archaea | 537 | Open in IMG/M |
JGI26112J46591_1043623 | Not Available | 530 | Open in IMG/M |
JGI26112J46591_1044214 | Not Available | 526 | Open in IMG/M |
JGI26112J46591_1045105 | Not Available | 520 | Open in IMG/M |
JGI26112J46591_1046619 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 510 | Open in IMG/M |
JGI26112J46591_1046813 | Not Available | 509 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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JGI26112J46591_1000364 | JGI26112J46591_100036414 | F070883 | METLEYLAYAGIXFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF* |
JGI26112J46591_1000798 | JGI26112J46591_100079810 | F009300 | MIKWKNTTYPSTFIRLSDELAKVRSMLSADVYNPDTEKYRGDQEHQIQSLGIFAELVARHLMENNKGIRYKAAPIIESRPVVEADIVIEGIEEYNYVDVKGIKSAGNALRVNFKAHNNPKKKITHYLFIQPLNGLYARFCWFTHEQVSKWTVVMSTYTECYELEIQKHN* |
JGI26112J46591_1000798 | JGI26112J46591_10007987 | F016596 | MTNQYSLDKXRKSXNEFEALLRIYGVSNTLLSKVMVVNYATSXKFLADPTRVRFIHAKRLADYLGLQMQDIVDTIVYDLK* |
JGI26112J46591_1005749 | JGI26112J46591_10057493 | F060127 | TFGNLKLRKPAEKAVKGELDPLGYQKVRMKDVYIDETEVKAKDLKEKLPRVAKSWEETEGKVVLPFYGDRSSGGLLVEGINDIVYDKPVYTEGGVDFMRGLAAQKDKAIWASNSNIIKRIDDVSKIASEKFDGADVLGVTGSMSPDANDFATMTGASMGELIKSAPITKKSAKEVDEIMKSIDPDFVGVLSPNIREWLETTTSPKRKSFIRLLDSKPFQEMGFPSSGLARYSVTDATQTDMPAGMFGLGAAKIDTTSPLLSNTKKGNLPVASVPHSTYNTQIAGDYFGSLPPVPQKYIFDDIYNAMEGKLDKRGYPLTSANITHAIKTKMPAVMMTPERIEGILNYLSRMEK* |
JGI26112J46591_1007854 | JGI26112J46591_10078542 | F005337 | MNPISPYDLETGHTYYIESYNQGVRTNKYRGVINNLNACTWYGHNVLEFGNIIEYVNGQETTSTERDSPTFPGNIFYVHVGTNATEPQYWLFYKPVADYLMTTQVLKQRTRLDKVSIWGLYKQHFDKTSGEGATSGGTPPLRRVWYDYLYRMKRV* |
JGI26112J46591_1008623 | JGI26112J46591_10086232 | F077377 | MKTLENFACHEQFKKTIQGIRATKKEFEDRQEHEALTNQRDGREYKKLKWTALHTSKCIQEAVFLLKEEEPSLSKEQLKKMLQTESVSIWFPYGVRKVEKALSVNGSAFHQSGWDRLGRGQPRF* |
JGI26112J46591_1010199 | JGI26112J46591_10101992 | F078711 | ILEGAILIFVCIFTSRTCISFTQRLSRGISIICLIGILYFASFWLLLISSELLHDHIEWFSFFEPDRVVILYSFTWLLPQTAKSLLIFLMGYREDDDSFEHSMTRILNSLNEERKYFNQLRKELNMGGGQLRRNLDRLISRGQIFKQTIGKNHYFSLTSPLSSPLD* |
JGI26112J46591_1011409 | JGI26112J46591_10114091 | F066836 | LSRLYRNTKFSIFXPLYRSDTVVVDLPDISVNAMLAPMADCEHSWMCHGKILALDTILDNWLGPTLALLHCAACGNPALLHLVSWRGNGLAERIYAIRLVDPMARNTYLTNINRDYCDLTRKASETEALISACSQSARLVLITGPEMIVEAFSRNLFNPPVMDWQDVKTETYESWLEFLPT* |
JGI26112J46591_1013684 | JGI26112J46591_10136842 | F005337 | MNSISPYDLETGHTYYIESYNDGVRTNKSRGVINNLNACTWNGHNVVEIGNMIEYVNGQETTSADRDSPTFPGNVFYVHVGTNATEPMYWLFYKPVADYLMTTQVLKQRTRLDNVSIWGLYKQHFE* |
JGI26112J46591_1014698 | JGI26112J46591_10146981 | F099286 | MMFQNLKINSHIVLVLCLFFFNCNQNNSCEFLDDNNQLLKPIVLKKFEDDVQRVFKNAEIEVAINAFLINEELDSISKNHYTANLISNYSNKSMSQYSSAFLEIYCDSIARIR |
JGI26112J46591_1016404 | JGI26112J46591_10164041 | F100932 | MITIKSTQSPNSIDGSPFDDFGFNYLWRLRGLEKYVPAFAEMCVLKNGFAKYCRVGGFNGVESRIIETLRNIEESFDLPEGSVNAEIIALTTGTFDETLSSEQFFHKKNKAFRLAGLFRDLKAKGQKNVGGHSEFFNMPEKMAKAKFANAQRKDCQKIGLDTVQWKRENNIYGCPTPLENPDEIGYAL* |
JGI26112J46591_1016709 | JGI26112J46591_10167092 | F056739 | TSSIPDPGIEVSRFNKASGRNLAGTKLLTTSKKNLITRTLKAKGIQNKSPDIK* |
JGI26112J46591_1018459 | JGI26112J46591_10184592 | F063661 | HEIERAKEMAEEEGFTLLLVKTNRGFDPQARNIRDSMKDIYNNFPAPSKKNTVKKIKNEEYFNVTRELETWRNTRNT* |
JGI26112J46591_1019259 | JGI26112J46591_10192592 | F051448 | MMKKGEKSMFKPSIKNKLIDIDYEDKNVKIAHYYNKKDHHGLPMHNGLVYVYTFDGYYEDWKVHAILDFDFMSNGWWYGSNFFDSYEEIAKYWAEKMFLPPREFVSKKDKERMEMDSLINAHICE |
JGI26112J46591_1019633 | JGI26112J46591_10196332 | F091417 | MDDLTTLTFYRLCWSYDIDGLMNTFGDVFDSSSIDMDYAYFMVYTRKYRVKKPDDCEPILTWLLNIEPDINVGRIENDYTADEHIPNDALLLACNNGHIEVIKWLYTEEPYLASFKNRCYICDIFEISCCNSNLDITKIIFEKLADYISVRVLILNQAYRNAIHHQNTQTAEWLLQINPTINIEADDQSFSI* |
JGI26112J46591_1020915 | JGI26112J46591_10209152 | F035977 | MTDLQQSIYDLKLLQYGAMKTLTPGVQAMIYTLSCVESEEQILQKYCDIHGTCYMVTGKSGDVYSRARPEWQQLKEARMRKQAIIAHLERWAGDGVEGEDELKEFLQ* |
JGI26112J46591_1022010 | JGI26112J46591_10220102 | F016736 | VLTLNPKGVYLIDQLGPTYKQLQTGVREKEKVETKGESDAKSRR* |
JGI26112J46591_1022510 | JGI26112J46591_10225101 | F090256 | VQSNTSTVTIDTGEIGEQLVEEFFPKAERTDDWFDSTKDGTIREKTYEVKTFRLNNRDQGFWVDSSQFRKLDNVDILYFVKIPESLEEGATIYECMEHKNEDAYEAFKLGPIKQMRCYFLDNCKKITNIRDERTDALYHNSVSMSKHNRYV* |
JGI26112J46591_1023156 | JGI26112J46591_10231562 | F005685 | MKKFNEYSSFEDKILATLKRSPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKQKK* |
JGI26112J46591_1023156 | JGI26112J46591_10231563 | F000245 | KKMKTFKEYSLERKLDKYVSDEIKKRKLARHPVNATDDYKMKKGKPAFKFPSPTGEMMIHVWLRPMAKPASKDTKAFNYQLEDK* |
JGI26112J46591_1024764 | JGI26112J46591_10247643 | F089037 | MSDMKTKIMSRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR* |
JGI26112J46591_1025043 | JGI26112J46591_10250431 | F051164 | MKNIFFILILFLSSHTVFGQWEKQFYVDENGVPTKDSYESLSARGSFSNAQTKNQEASYIFIKDEASITVKIFEYNTEVPSTSQASFQDVVLTKPDGNIAKIKRVFFTKKGALFFSKGKFCEKDQICLWHLLESWIVNKDKFADFNKQTQTPG |
JGI26112J46591_1025722 | JGI26112J46591_10257221 | F016590 | IWPDTIRSTVFHVTDHAGLGRLKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSDIMSEVDKTGRRWVEMSWFANAQRYGTGPAFDKVEKDLNTLIVGLVKKHLPKGKEVQQTKHFGKDQGAAFDIWSNMKHHLKGDGRILRVVIKDYFDGVEKIIKKHKKVMGNIFYGYARSKRSTEDSWDEQLVNNIKVKTVHLIKPTQRKIDTANPDRTHPIDSYEFAKEKAEKLFG |
JGI26112J46591_1027119 | JGI26112J46591_10271192 | F011096 | IKAKKKTDIQLMGKDFVERINGYREVFPAKKLPSGKPARNNVKALGEAFRWFFETYDHTWDEVQKATKMYVNEYRDAEYMYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEQDHFKENVV* |
JGI26112J46591_1031081 | JGI26112J46591_10310812 | F105503 | VSVIIFRGKHHNKRIVNSLLSKESEFVARIKAAWDFKDGDPDNPYPKNSPAWNAYQEEFFKIYMDGFYAEQEQK* |
JGI26112J46591_1033548 | JGI26112J46591_10335482 | F045374 | MICNECNSEPFEVVIKEDLGYEHEAAEFEIEVTHCPFCGANLEWAQRGGYDASEYDNEEERLDA* |
JGI26112J46591_1034113 | JGI26112J46591_10341131 | F019658 | SLKMKASKIKNQNYKLFKYNLLKLQIYSNQYTFTLNKFSNSMLEQIEAYLKQVLKIIFEYHV*QFKILFIGFPVICKMKQMKLIHFTNHNFIPEKS*VSGVFRNRLSILTYLNLIQSQSFSKSLKLLLTIKTKPHLVVVFNQKVEHSTINEFYKAGIPILSFN*NSFDRFKIAYQTLGNFNFIERNIKLTFFFLFYSLLKKTPL |
JGI26112J46591_1035981 | JGI26112J46591_10359812 | F040871 | LSKTEQFVLLENKLQHMGMMGQWYQRYDISKTAEECKVIIKKLKKELDPPCGMSRK* |
JGI26112J46591_1040834 | JGI26112J46591_10408343 | F008236 | LFAWCDSDQKIATKRPRSKKKADQWRSDLPKLVVIGEDKYITCPEIRRGRGVVTCTKTKNSVNCQLCVQGFANVLFPSH* |
JGI26112J46591_1040976 | JGI26112J46591_10409762 | F011338 | RNEGYTVRDVEVRNGFAYGGPRVKNLSDRAFTTFSANNAITLEGGAGDGEIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA* |
JGI26112J46591_1041782 | JGI26112J46591_10417821 | F015654 | MKRFFXEVYITGHGKEDKNTFNTFKDTKFYKVNAEKVEELKDCDNVKY |
JGI26112J46591_1042660 | JGI26112J46591_10426601 | F057444 | KQPEWENMVGGKEPPEQLKEYIEKMIEFNNTAKDILKDTRDWLVTNGNSSR* |
JGI26112J46591_1043623 | JGI26112J46591_10436231 | F099286 | MMFQNLKINSQIVLVLCFFIFSCNQNNSCNFLDDNNQLIKPIILKRFDDDVQKVFKNAGLKVAVKAFLINEKLDSVSKNHYTVNLISNYSNQSMSQYSLAYFEIYCDSIARIRSKPVSRFEFEELYNQS |
JGI26112J46591_1044214 | JGI26112J46591_10442142 | F099541 | MNHKTSRNISKSVQLKKLKEKLHVAGHDRSHKKINMVKALKNLMKRETRKGL* |
JGI26112J46591_1045105 | JGI26112J46591_10451051 | F000711 | METINEPTHPTDYRLVKLMDGSLLIGTISVDDNHMRIANPLEMVTTPRMTEHGLKEDTTLCRWIPFTQDKEFYILKDKVLVISVATVELAHYYEVVLEKIDKTDAKLALRPGLTPEDIDRILDIAEEMDSEFVGEDDD |
JGI26112J46591_1046619 | JGI26112J46591_10466191 | F011529 | GIRLRSCKLWLDDTGFHPFLDPDEMIRPDMQKSMGVAFDELPKEAWDVMDRYDWEKAKRSKYATGN* |
JGI26112J46591_1046813 | JGI26112J46591_10468132 | F098669 | METATRGRKQKWRLKEAEGLGRKRRIGEAEGREPHESDQGLDSGPGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPCLGRVFFV |
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