NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003269

3300003269: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20



Overview

Basic Information
IMG/M Taxon OID3300003269 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0099541 | Gp0089018 | Ga0008461
Sample NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size101495762
Sequencing Scaffolds35
Novel Protein Genes37
Associated Families35

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
Not Available19
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Polaribacter1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Dermocarpellaceae → Stanieria → Stanieria cyanosphaera1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomeintertidal zonesea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F000711Metagenome / Metatranscriptome925Y
F005337Metagenome / Metatranscriptome404Y
F005685Metagenome / Metatranscriptome393Y
F008236Metagenome / Metatranscriptome336Y
F009300Metagenome320Y
F011096Metagenome / Metatranscriptome295Y
F011338Metagenome / Metatranscriptome292N
F011529Metagenome / Metatranscriptome290Y
F015654Metagenome / Metatranscriptome253N
F016590Metagenome246Y
F016596Metagenome / Metatranscriptome246Y
F016736Metagenome / Metatranscriptome245Y
F019658Metagenome / Metatranscriptome228Y
F035977Metagenome171Y
F040871Metagenome / Metatranscriptome161Y
F045374Metagenome / Metatranscriptome153Y
F051164Metagenome / Metatranscriptome144N
F051448Metagenome / Metatranscriptome144N
F056739Metagenome / Metatranscriptome137Y
F057444Metagenome136N
F060127Metagenome133Y
F063661Metagenome / Metatranscriptome129Y
F066836Metagenome / Metatranscriptome126N
F070883Metagenome / Metatranscriptome122N
F077377Metagenome / Metatranscriptome117N
F078711Metagenome / Metatranscriptome116N
F089037Metagenome / Metatranscriptome109Y
F090256Metagenome108N
F091417Metagenome107N
F098669Metagenome / Metatranscriptome103N
F099286Metagenome / Metatranscriptome103N
F099541Metagenome103Y
F100932Metagenome102N
F105503Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI26112J46591_1000364All Organisms → cellular organisms → Bacteria9203Open in IMG/M
JGI26112J46591_1000798All Organisms → cellular organisms → Bacteria5992Open in IMG/M
JGI26112J46591_1005749Not Available1879Open in IMG/M
JGI26112J46591_1007854Not Available1536Open in IMG/M
JGI26112J46591_1008623All Organisms → cellular organisms → Bacteria1439Open in IMG/M
JGI26112J46591_1010199All Organisms → cellular organisms → Archaea1296Open in IMG/M
JGI26112J46591_1011409All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1210Open in IMG/M
JGI26112J46591_1013684Not Available1080Open in IMG/M
JGI26112J46591_1014698All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Polaribacter1031Open in IMG/M
JGI26112J46591_1016404All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon965Open in IMG/M
JGI26112J46591_1016709Not Available953Open in IMG/M
JGI26112J46591_1018459All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium897Open in IMG/M
JGI26112J46591_1019259Not Available873Open in IMG/M
JGI26112J46591_1019633Not Available863Open in IMG/M
JGI26112J46591_1020915Not Available830Open in IMG/M
JGI26112J46591_1022010All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster805Open in IMG/M
JGI26112J46591_1022510Not Available793Open in IMG/M
JGI26112J46591_1023156Not Available779Open in IMG/M
JGI26112J46591_1024764Not Available747Open in IMG/M
JGI26112J46591_1025043Not Available742Open in IMG/M
JGI26112J46591_1025722Not Available730Open in IMG/M
JGI26112J46591_1027119All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium707Open in IMG/M
JGI26112J46591_1031081All Organisms → cellular organisms → Bacteria651Open in IMG/M
JGI26112J46591_1033548All Organisms → cellular organisms → Bacteria622Open in IMG/M
JGI26112J46591_1034113All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Dermocarpellaceae → Stanieria → Stanieria cyanosphaera615Open in IMG/M
JGI26112J46591_1035981Not Available595Open in IMG/M
JGI26112J46591_1040834All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium552Open in IMG/M
JGI26112J46591_1040976Not Available551Open in IMG/M
JGI26112J46591_1041782Not Available545Open in IMG/M
JGI26112J46591_1042660All Organisms → cellular organisms → Archaea537Open in IMG/M
JGI26112J46591_1043623Not Available530Open in IMG/M
JGI26112J46591_1044214Not Available526Open in IMG/M
JGI26112J46591_1045105Not Available520Open in IMG/M
JGI26112J46591_1046619All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium510Open in IMG/M
JGI26112J46591_1046813Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI26112J46591_1000364JGI26112J46591_100036414F070883METLEYLAYAGIXFGMLVSAFTIDWKDKKTYRNSLIILTVIAAGTGILFLIDF*
JGI26112J46591_1000798JGI26112J46591_100079810F009300MIKWKNTTYPSTFIRLSDELAKVRSMLSADVYNPDTEKYRGDQEHQIQSLGIFAELVARHLMENNKGIRYKAAPIIESRPVVEADIVIEGIEEYNYVDVKGIKSAGNALRVNFKAHNNPKKKITHYLFIQPLNGLYARFCWFTHEQVSKWTVVMSTYTECYELEIQKHN*
JGI26112J46591_1000798JGI26112J46591_10007987F016596MTNQYSLDKXRKSXNEFEALLRIYGVSNTLLSKVMVVNYATSXKFLADPTRVRFIHAKRLADYLGLQMQDIVDTIVYDLK*
JGI26112J46591_1005749JGI26112J46591_10057493F060127TFGNLKLRKPAEKAVKGELDPLGYQKVRMKDVYIDETEVKAKDLKEKLPRVAKSWEETEGKVVLPFYGDRSSGGLLVEGINDIVYDKPVYTEGGVDFMRGLAAQKDKAIWASNSNIIKRIDDVSKIASEKFDGADVLGVTGSMSPDANDFATMTGASMGELIKSAPITKKSAKEVDEIMKSIDPDFVGVLSPNIREWLETTTSPKRKSFIRLLDSKPFQEMGFPSSGLARYSVTDATQTDMPAGMFGLGAAKIDTTSPLLSNTKKGNLPVASVPHSTYNTQIAGDYFGSLPPVPQKYIFDDIYNAMEGKLDKRGYPLTSANITHAIKTKMPAVMMTPERIEGILNYLSRMEK*
JGI26112J46591_1007854JGI26112J46591_10078542F005337MNPISPYDLETGHTYYIESYNQGVRTNKYRGVINNLNACTWYGHNVLEFGNIIEYVNGQETTSTERDSPTFPGNIFYVHVGTNATEPQYWLFYKPVADYLMTTQVLKQRTRLDKVSIWGLYKQHFDKTSGEGATSGGTPPLRRVWYDYLYRMKRV*
JGI26112J46591_1008623JGI26112J46591_10086232F077377MKTLENFACHEQFKKTIQGIRATKKEFEDRQEHEALTNQRDGREYKKLKWTALHTSKCIQEAVFLLKEEEPSLSKEQLKKMLQTESVSIWFPYGVRKVEKALSVNGSAFHQSGWDRLGRGQPRF*
JGI26112J46591_1010199JGI26112J46591_10101992F078711ILEGAILIFVCIFTSRTCISFTQRLSRGISIICLIGILYFASFWLLLISSELLHDHIEWFSFFEPDRVVILYSFTWLLPQTAKSLLIFLMGYREDDDSFEHSMTRILNSLNEERKYFNQLRKELNMGGGQLRRNLDRLISRGQIFKQTIGKNHYFSLTSPLSSPLD*
JGI26112J46591_1011409JGI26112J46591_10114091F066836LSRLYRNTKFSIFXPLYRSDTVVVDLPDISVNAMLAPMADCEHSWMCHGKILALDTILDNWLGPTLALLHCAACGNPALLHLVSWRGNGLAERIYAIRLVDPMARNTYLTNINRDYCDLTRKASETEALISACSQSARLVLITGPEMIVEAFSRNLFNPPVMDWQDVKTETYESWLEFLPT*
JGI26112J46591_1013684JGI26112J46591_10136842F005337MNSISPYDLETGHTYYIESYNDGVRTNKSRGVINNLNACTWNGHNVVEIGNMIEYVNGQETTSADRDSPTFPGNVFYVHVGTNATEPMYWLFYKPVADYLMTTQVLKQRTRLDNVSIWGLYKQHFE*
JGI26112J46591_1014698JGI26112J46591_10146981F099286MMFQNLKINSHIVLVLCLFFFNCNQNNSCEFLDDNNQLLKPIVLKKFEDDVQRVFKNAEIEVAINAFLINEELDSISKNHYTANLISNYSNKSMSQYSSAFLEIYCDSIARIR
JGI26112J46591_1016404JGI26112J46591_10164041F100932MITIKSTQSPNSIDGSPFDDFGFNYLWRLRGLEKYVPAFAEMCVLKNGFAKYCRVGGFNGVESRIIETLRNIEESFDLPEGSVNAEIIALTTGTFDETLSSEQFFHKKNKAFRLAGLFRDLKAKGQKNVGGHSEFFNMPEKMAKAKFANAQRKDCQKIGLDTVQWKRENNIYGCPTPLENPDEIGYAL*
JGI26112J46591_1016709JGI26112J46591_10167092F056739TSSIPDPGIEVSRFNKASGRNLAGTKLLTTSKKNLITRTLKAKGIQNKSPDIK*
JGI26112J46591_1018459JGI26112J46591_10184592F063661HEIERAKEMAEEEGFTLLLVKTNRGFDPQARNIRDSMKDIYNNFPAPSKKNTVKKIKNEEYFNVTRELETWRNTRNT*
JGI26112J46591_1019259JGI26112J46591_10192592F051448MMKKGEKSMFKPSIKNKLIDIDYEDKNVKIAHYYNKKDHHGLPMHNGLVYVYTFDGYYEDWKVHAILDFDFMSNGWWYGSNFFDSYEEIAKYWAEKMFLPPREFVSKKDKERMEMDSLINAHICE
JGI26112J46591_1019633JGI26112J46591_10196332F091417MDDLTTLTFYRLCWSYDIDGLMNTFGDVFDSSSIDMDYAYFMVYTRKYRVKKPDDCEPILTWLLNIEPDINVGRIENDYTADEHIPNDALLLACNNGHIEVIKWLYTEEPYLASFKNRCYICDIFEISCCNSNLDITKIIFEKLADYISVRVLILNQAYRNAIHHQNTQTAEWLLQINPTINIEADDQSFSI*
JGI26112J46591_1020915JGI26112J46591_10209152F035977MTDLQQSIYDLKLLQYGAMKTLTPGVQAMIYTLSCVESEEQILQKYCDIHGTCYMVTGKSGDVYSRARPEWQQLKEARMRKQAIIAHLERWAGDGVEGEDELKEFLQ*
JGI26112J46591_1022010JGI26112J46591_10220102F016736VLTLNPKGVYLIDQLGPTYKQLQTGVREKEKVETKGESDAKSRR*
JGI26112J46591_1022510JGI26112J46591_10225101F090256VQSNTSTVTIDTGEIGEQLVEEFFPKAERTDDWFDSTKDGTIREKTYEVKTFRLNNRDQGFWVDSSQFRKLDNVDILYFVKIPESLEEGATIYECMEHKNEDAYEAFKLGPIKQMRCYFLDNCKKITNIRDERTDALYHNSVSMSKHNRYV*
JGI26112J46591_1023156JGI26112J46591_10231562F005685MKKFNEYSSFEDKILATLKRSPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKQKK*
JGI26112J46591_1023156JGI26112J46591_10231563F000245KKMKTFKEYSLERKLDKYVSDEIKKRKLARHPVNATDDYKMKKGKPAFKFPSPTGEMMIHVWLRPMAKPASKDTKAFNYQLEDK*
JGI26112J46591_1024764JGI26112J46591_10247643F089037MSDMKTKIMSRLISGKGWEPGEFWDQLPDVVHSTDIEEKAVWRDDKNNPIYIKDKR*
JGI26112J46591_1025043JGI26112J46591_10250431F051164MKNIFFILILFLSSHTVFGQWEKQFYVDENGVPTKDSYESLSARGSFSNAQTKNQEASYIFIKDEASITVKIFEYNTEVPSTSQASFQDVVLTKPDGNIAKIKRVFFTKKGALFFSKGKFCEKDQICLWHLLESWIVNKDKFADFNKQTQTPG
JGI26112J46591_1025722JGI26112J46591_10257221F016590IWPDTIRSTVFHVTDHAGLGRLKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSDIMSEVDKTGRRWVEMSWFANAQRYGTGPAFDKVEKDLNTLIVGLVKKHLPKGKEVQQTKHFGKDQGAAFDIWSNMKHHLKGDGRILRVVIKDYFDGVEKIIKKHKKVMGNIFYGYARSKRSTEDSWDEQLVNNIKVKTVHLIKPTQRKIDTANPDRTHPIDSYEFAKEKAEKLFG
JGI26112J46591_1027119JGI26112J46591_10271192F011096IKAKKKTDIQLMGKDFVERINGYREVFPAKKLPSGKPARNNVKALGEAFRWFFETYDHTWDEVQKATKMYVNEYRDAEYMYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEQDHFKENVV*
JGI26112J46591_1031081JGI26112J46591_10310812F105503VSVIIFRGKHHNKRIVNSLLSKESEFVARIKAAWDFKDGDPDNPYPKNSPAWNAYQEEFFKIYMDGFYAEQEQK*
JGI26112J46591_1033548JGI26112J46591_10335482F045374MICNECNSEPFEVVIKEDLGYEHEAAEFEIEVTHCPFCGANLEWAQRGGYDASEYDNEEERLDA*
JGI26112J46591_1034113JGI26112J46591_10341131F019658SLKMKASKIKNQNYKLFKYNLLKLQIYSNQYTFTLNKFSNSMLEQIEAYLKQVLKIIFEYHV*QFKILFIGFPVICKMKQMKLIHFTNHNFIPEKS*VSGVFRNRLSILTYLNLIQSQSFSKSLKLLLTIKTKPHLVVVFNQKVEHSTINEFYKAGIPILSFN*NSFDRFKIAYQTLGNFNFIERNIKLTFFFLFYSLLKKTPL
JGI26112J46591_1035981JGI26112J46591_10359812F040871LSKTEQFVLLENKLQHMGMMGQWYQRYDISKTAEECKVIIKKLKKELDPPCGMSRK*
JGI26112J46591_1040834JGI26112J46591_10408343F008236LFAWCDSDQKIATKRPRSKKKADQWRSDLPKLVVIGEDKYITCPEIRRGRGVVTCTKTKNSVNCQLCVQGFANVLFPSH*
JGI26112J46591_1040976JGI26112J46591_10409762F011338RNEGYTVRDVEVRNGFAYGGPRVKNLSDRAFTTFSANNAITLEGGAGDGEIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
JGI26112J46591_1041782JGI26112J46591_10417821F015654MKRFFXEVYITGHGKEDKNTFNTFKDTKFYKVNAEKVEELKDCDNVKY
JGI26112J46591_1042660JGI26112J46591_10426601F057444KQPEWENMVGGKEPPEQLKEYIEKMIEFNNTAKDILKDTRDWLVTNGNSSR*
JGI26112J46591_1043623JGI26112J46591_10436231F099286MMFQNLKINSQIVLVLCFFIFSCNQNNSCNFLDDNNQLIKPIILKRFDDDVQKVFKNAGLKVAVKAFLINEKLDSVSKNHYTVNLISNYSNQSMSQYSLAYFEIYCDSIARIRSKPVSRFEFEELYNQS
JGI26112J46591_1044214JGI26112J46591_10442142F099541MNHKTSRNISKSVQLKKLKEKLHVAGHDRSHKKINMVKALKNLMKRETRKGL*
JGI26112J46591_1045105JGI26112J46591_10451051F000711METINEPTHPTDYRLVKLMDGSLLIGTISVDDNHMRIANPLEMVTTPRMTEHGLKEDTTLCRWIPFTQDKEFYILKDKVLVISVATVELAHYYEVVLEKIDKTDAKLALRPGLTPEDIDRILDIAEEMDSEFVGEDDD
JGI26112J46591_1046619JGI26112J46591_10466191F011529GIRLRSCKLWLDDTGFHPFLDPDEMIRPDMQKSMGVAFDELPKEAWDVMDRYDWEKAKRSKYATGN*
JGI26112J46591_1046813JGI26112J46591_10468132F098669METATRGRKQKWRLKEAEGLGRKRRIGEAEGREPHESDQGLDSGPGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPCLGRVFFV

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