3300003086: Marine viral communities from deep ocean hydrothermal plumes from the Lau and Guaymas Basin

Overview

Basic Information

• IMG/M Taxon OID: 3300003086
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0097384 | Gp0097427 | Ga0052187
• Sample Name: Marine viral communities from deep ocean hydrothermal plumes from the Lau and Guaymas Basin
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Michigan
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2311950
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Guaymas Basin, Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Lau and Guaymas Basin
• Coordinates
  • Lat. (^o): -20.053234
  • Long. (^o): -176.133763
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014191	Metagenome / Metatranscriptome	265	Y
F036429	Metagenome / Metatranscriptome	170	N
F105866	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0052187_10045	Not Available	86515
Ga0052187_10046	Not Available	50322
Ga0052187_10081	Not Available	73697

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052187_10005	Ga0052187_100053	F036429	MATVKSVEITNLDATPRTTLEAASAGGKLRVWMDTIAVGTGDLDDDDIIILGQVPSNAKIVSLMIYNDDLNSGSGTHNVGLYNGPQAYTISGTTTAAAAVIDEDCYVTDSTAFRAAVTEPVELLAETRNINAIANFVWEDGGLSEDPKVPLRLAVTMSAVGTAIAGDITLVVKYTID*
Ga0052187_10045	Ga0052187_1004590	F014191	MDLTFITAELLNDISWFDGIAYTVLGLVVYAVAKYINTKIN*
Ga0052187_10046	Ga0052187_1004610	F105866	MATEDTGFTQIPYVRKDDTFKEWRERTNLMIQQQNNFVRMQEFDMLGVSDVWVKTSMQLNYSGETEN*
Ga0052187_10081	Ga0052187_10081127	F014191	MDLRFITAELLNDISWFDGIMYIILGIGIYAIIKYINTKIN*