Sample 3300002864

Basic Information
IMG/M Taxon OID	3300002864 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110115 \| Gp0061279 \| Ga0006764
Sample Name	Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_7 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002864 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0110115 | Gp0061279 | Ga0006764

Sample Name

Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_7 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	7047355
Sequencing Scaffolds	45
Novel Protein Genes	54
Associated Families	49

Dataset Contents

Total Genome Size

7047355

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa	1
Not Available	37
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Glires → Rodentia → Myomorpha → Muroidea → Muridae → Murinae → Rattus → Rattus norvegicus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Glires → Rodentia → Myomorpha → Muroidea → Muridae → Murinae → Rattus → Rattus norvegicus

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes

Ecosystem Assignment (GOLD)
Name	Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Ecosystem Assignment (GOLD)

Name

Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Type

Host-Associated

Taxonomy

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → rhizosphere → soil

Earth Microbiome Project Ontology (EMPO)

Host-associated → Plant → Plant rhizosphere

Location Information
Location	Hopland, California, USA
Coordinates	Lat. (^o)	38.97364	Long. (^o)	-123.117453	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

Hopland, California, USA

Coordinates

Lat. (^o)

38.97364

Long. (^o)

-123.117453

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F000734	Metagenome / Metatranscriptome	915	Y
F000817	Metagenome / Metatranscriptome	879	Y
F001346	Metagenome / Metatranscriptome	718	Y
F001758	Metagenome / Metatranscriptome	640	Y
F002654	Metagenome / Metatranscriptome	539	Y
F005048	Metagenome / Metatranscriptome	413	Y
F008172	Metagenome / Metatranscriptome	337	Y
F010442	Metagenome / Metatranscriptome	303	Y
F012439	Metagenome / Metatranscriptome	280	Y
F014312	Metagenome / Metatranscriptome	264	Y
F015217	Metagenome / Metatranscriptome	256	Y
F016001	Metagenome / Metatranscriptome	250	Y
F017082	Metagenome / Metatranscriptome	242	Y
F018876	Metagenome / Metatranscriptome	232	Y
F019936	Metagenome / Metatranscriptome	226	Y
F022652	Metagenome / Metatranscriptome	213	Y
F023129	Metagenome / Metatranscriptome	211	Y
F027071	Metagenome / Metatranscriptome	195	Y
F027072	Metagenome / Metatranscriptome	195	Y
F027763	Metagenome / Metatranscriptome	193	Y
F028810	Metagenome / Metatranscriptome	190	Y
F032547	Metagenome / Metatranscriptome	179	N
F034588	Metagenome / Metatranscriptome	174	N
F035116	Metagenome / Metatranscriptome	173	Y
F035161	Metagenome / Metatranscriptome	172	Y
F040542	Metagenome / Metatranscriptome	161	Y
F041060	Metagenome / Metatranscriptome	160	Y
F044324	Metagenome / Metatranscriptome	154	Y
F046210	Metagenome / Metatranscriptome	151	N
F047514	Metagenome / Metatranscriptome	149	N
F054493	Metagenome / Metatranscriptome	139	Y
F056192	Metagenome / Metatranscriptome	138	Y
F060965	Metagenome / Metatranscriptome	132	Y
F062739	Metagenome / Metatranscriptome	130	Y
F065302	Metagenome / Metatranscriptome	127	Y
F066797	Metagenome / Metatranscriptome	126	Y
F070802	Metagenome / Metatranscriptome	122	Y
F072008	Metagenome / Metatranscriptome	121	Y
F076910	Metagenome / Metatranscriptome	117	N
F081239	Metagenome / Metatranscriptome	114	Y
F081897	Metagenome / Metatranscriptome	114	Y
F082288	Metagenome / Metatranscriptome	113	N
F083053	Metagenome / Metatranscriptome	113	N
F088039	Metagenome / Metatranscriptome	109	N
F099329	Metagenome / Metatranscriptome	103	Y
F100491	Metatranscriptome	102	Y
F102642	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0006764J43180_100003	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
Ga0006764J43180_100054	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	823	Open in IMG/M
Ga0006764J43180_100066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa	970	Open in IMG/M
Ga0006764J43180_100082	Not Available	655	Open in IMG/M
Ga0006764J43180_100167	Not Available	501	Open in IMG/M
Ga0006764J43180_100201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
Ga0006764J43180_100260	Not Available	588	Open in IMG/M
Ga0006764J43180_100282	Not Available	739	Open in IMG/M
Ga0006764J43180_100287	Not Available	963	Open in IMG/M
Ga0006764J43180_100299	Not Available	808	Open in IMG/M
Ga0006764J43180_100623	Not Available	551	Open in IMG/M
Ga0006764J43180_100852	Not Available	692	Open in IMG/M
Ga0006764J43180_101007	Not Available	931	Open in IMG/M
Ga0006764J43180_101024	Not Available	805	Open in IMG/M
Ga0006764J43180_101036	Not Available	1277	Open in IMG/M
Ga0006764J43180_101109	Not Available	539	Open in IMG/M
Ga0006764J43180_101198	Not Available	724	Open in IMG/M
Ga0006764J43180_101350	Not Available	668	Open in IMG/M
Ga0006764J43180_101522	Not Available	781	Open in IMG/M
Ga0006764J43180_101558	Not Available	803	Open in IMG/M
Ga0006764J43180_101662	Not Available	583	Open in IMG/M
Ga0006764J43180_102265	Not Available	559	Open in IMG/M
Ga0006764J43180_102397	Not Available	711	Open in IMG/M
Ga0006764J43180_102746	Not Available	763	Open in IMG/M
Ga0006764J43180_103024	Not Available	862	Open in IMG/M
Ga0006764J43180_103121	Not Available	595	Open in IMG/M
Ga0006764J43180_103377	Not Available	535	Open in IMG/M
Ga0006764J43180_103559	Not Available	728	Open in IMG/M
Ga0006764J43180_103690	Not Available	945	Open in IMG/M
Ga0006764J43180_104098	Not Available	566	Open in IMG/M
Ga0006764J43180_104155	Not Available	1000	Open in IMG/M
Ga0006764J43180_104191	Not Available	652	Open in IMG/M
Ga0006764J43180_104481	Not Available	1282	Open in IMG/M
Ga0006764J43180_104834	Not Available	571	Open in IMG/M
Ga0006764J43180_105346	Not Available	685	Open in IMG/M
Ga0006764J43180_105373	Not Available	500	Open in IMG/M
Ga0006764J43180_105680	Not Available	675	Open in IMG/M
Ga0006764J43180_106630	Not Available	1151	Open in IMG/M
Ga0006764J43180_106920	Not Available	881	Open in IMG/M
Ga0006764J43180_107095	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Glires → Rodentia → Myomorpha → Muroidea → Muridae → Murinae → Rattus → Rattus norvegicus	826	Open in IMG/M
Ga0006764J43180_107227	Not Available	547	Open in IMG/M
Ga0006764J43180_107749	Not Available	543	Open in IMG/M
Ga0006764J43180_108330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	839	Open in IMG/M
Ga0006764J43180_108503	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	677	Open in IMG/M
Ga0006764J43180_109730	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	911	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006764J43180_100003	Ga0006764J43180_1000031	F014312	VTAIETNKGTANGVVRLWERVKAERFALAMTPLVEAERLARKTERFSERPDKNG*
Ga0006764J43180_100054	Ga0006764J43180_1000542	F000344	MRPKHPHAAESGVGKHTARESERVQACAAGKERVTNAHPHNWPR
Ga0006764J43180_100066	Ga0006764J43180_1000661	F034588	LPRWLLHPPASPLIRTSGCPSFRISGFTGDRSSSRLDSLSFGGAGCESSRSPLRFASPVSPTISFWVAPDPHPPVPADFRSESPRSSVPSGRPLRISGLLRLFVLGFVAQTFPKSPWFLLAQRRRFRLSRVAPKLPSSADPYLPPQVAPASASTAGSMITPWLNRTLHPQLAPRMNLRYHSGTSIPDLISSALLISIHCPQSADHEP*
Ga0006764J43180_100082	Ga0006764J43180_1000821	F000817	RLTLGVSRIIPGDWGKVESGWLAHLLLKRIERSVSGGRIHQFL*
Ga0006764J43180_100082	Ga0006764J43180_1000822	F001346	VEQSERTFREGHAVQARSVKTFRELGDVKNDTAELWKKSNLRVKRPDPSHRANALSKTVAVPAQEGEDAERKSQPCLNLVRKPVAQPSVEAS*
Ga0006764J43180_100167	Ga0006764J43180_1001671	F081239	GSQGSGAEAEFTGSSDTFARVSNAKKELGNEERLETVPSWIK*
Ga0006764J43180_100201	Ga0006764J43180_1002011	F014312	RITVLETDEGTANGVVRLWERAKAERFAVAMTPLVEAERLAGKTERFSGRPDKNG*
Ga0006764J43180_100214	Ga0006764J43180_1002142	F000203	PVPTFGGQLAAGFPTLFSTASGVFGLVAGPSSALQRLDFE*
Ga0006764J43180_100260	Ga0006764J43180_1002601	F032547	GSK*PIQQLSFLPACTVEAVQSRSSCVLPLVLPAPYFRSARIKAPGHASRLTPDRNPYLGTAFHSLDKTARFRTTLPKSMLLAYPFGSSLSLPRTRSIRPLVHAAWLAPNCANSTRQTRCPVPSQRPRPLFRPTLPFRAFGPFPIKALTSIPIERFTESTRPIALRSPLPAVLIEPATDQCSRLATSRSAYCLTNL
Ga0006764J43180_100282	Ga0006764J43180_1002821	F001758	LNSSESGSKDLKGEAEFTSSSGGVRAPSVNAKKGLRSKERLETVPNSVK*
Ga0006764J43180_100287	Ga0006764J43180_1002871	F083053	CRELDGNSGLTGDAGLMETGSTLDAKAEGERPKEIETASSVGQGKLDPLDAKIHPRRKPEDAKFEDSRGFNIDPTVDAEAGQPGEA*
Ga0006764J43180_100299	Ga0006764J43180_1002992	F041060	VTDGPATRPKTPLAVENSVGKLAAPEGGAKCQPGKESVANSHP
Ga0006764J43180_100410	Ga0006764J43180_1004101	F056192	RFEGQRAKREVAELERSAARWYVKTIATRRGVKADRATRYGKFLRLKSGRALSGRDRKVLKGSGSPNTSGELWERKLATGDSRSSPAGRKKPGEAGSGKPNGSIEILRQLRCRPGASTRPRGFAARQTFAAGE*KAASRSKLLPERRADEHQSYDPRLNKTGRGERRAHVTSDPDAKLRPCMPVGERAIHRVTWNR
Ga0006764J43180_100623	Ga0006764J43180_1006231	F065302	VQGSRYDSATRLHADVRFAARCSGIACHSPSPLFSMRVTVASALNGHNTLPEPESRYGLSLAHNDAFATIARSTFLACTFVSPSDTFANPFDSRLLRSVRFRGRTGALSMPGTRFPRRSPTFPIDPRSPLPFRSSCENPPDQSVQPVPFQEARLARSIASYSPPLPLSIPLQINVNSLR
Ga0006764J43180_100852	Ga0006764J43180_1008522	F035116	VSAPGSQAGGATISRSELKSLLEIQPHEMLDGPATRPKTPLAVENSVGKPAAAREGVAPNVGV
Ga0006764J43180_101007	Ga0006764J43180_1010071	F047514	CDVLNRSMPESSEAVPRGAREGDNMETRDRAGVKAGCNACFDARPGRESLMEKGRQHSDESHELLGCRC*
Ga0006764J43180_101024	Ga0006764J43180_1010242	F081897	GGWEFAMLSFPCRHLAPYLGMAAGFPTLFSTASGVFGLVAGPSSTLRLLNFE*
Ga0006764J43180_101036	Ga0006764J43180_1010361	F070802	RRPALRIIRILPSAISSILYISSSVLAIMKQYSSIVLFMLVAISGHALGAPLDGSNGDCPGGLANGAQIERGRSVFECRNGNVVAKACVADDLKHIDIGSTTDKKAFRLQCTVNSDGSATLEPTACLHQGQEHKVDEQWEDSTNFYTCKKSETELKVITAGCIDQGKRVPLNQQAAHDDFVFVCNGTVNNGARMMPSGCVKDGKQYNVGDSFEAGNLWFNCTRTGSEKVAAKAAGCVTNGKRVNDGDRYSDNEVIQECDINGQPRLIGCAERDDKGEIVERRVGCTWVEGPEPFQYEWTCRQESNSAKKVQVRCNYKVGGGVYNIEPGCYRVIDKSAFGCLNNAGTLKLQSFQGDNAEQSAQGAGLHAC*
Ga0006764J43180_101109	Ga0006764J43180_1011091	F062739	ALSYAIKSAGRFACRLLNERFRRSQNQCLQARRLLPLSRDRIARDGLSLACNGCHLSAASIPGSKLPACHFAPFQVSVHARSALQLRYHVTGLRRSRPPQRLWPVALPPPDSADRAYRLRSPLGCLFPLGSKRSTAFAARRSA*
Ga0006764J43180_101198	Ga0006764J43180_1011981	F066797	LNIYQIISSADLGGSSNYSKEKAKFDTIFLATLKTEVAKVFMTTEIAHELVDPNPKDYEK
Ga0006764J43180_101350	Ga0006764J43180_1013501	F027071	PLIKSARRKSCSNLISFYQHSRSIFAALPCGGAVSSNAIDNNIELKLTTTPLRKQLPLFVQRRHRPSTPLAPALANLRSKHKRQHGNAPSGQRINSLRNHFTGKRFAPSLPLHQLSLTLRIKIIGHFNKAKLNSTDTSLLAKLCISSANALANILAIGNFTLLANHQTAVPEEISFDLLGPFNRRYCYPRSAAISASCPTNTSTLNRQDNSCKYCYLAEVIR
Ga0006764J43180_101522	Ga0006764J43180_1015221	F012439	PPRPRDFARALRFLSVRRPPHLSMRFHPPASFPPPPECYGLRAALLAWLNLATQPNGRRAPPMGSSSLIAASTGGVYHSAGNPDPAVTFRPRRFSRPRRFAPPPAFAGLFHPAATSRVCPSGVYPSPRSRAGFPRPCHALLPLGAPAFDQRTRPRLQGLAPRGECGAGGDGLGHHRSAPLMGFSSPGHSPRASWECLHIPSAHGLHREEPLAADPRRFADARVGLPGFRLPTRSSFLA*
Ga0006764J43180_101558	Ga0006764J43180_1015581	F046210	MKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAEAALKSCNVNS*
Ga0006764J43180_101662	Ga0006764J43180_1016621	F028810	FQVTYPTIQLPPGMHGRSCAIWVIVRIASCAPRVVTFARLGSTPLRHASRLTPDRNPLLGTAFRSLEKTARFRATFPKSMFLAYPFGSSSSLS*
Ga0006764J43180_101795	Ga0006764J43180_1017952	F102642	MTLACFLNETLLSERRRKAGQREHSSREGHDVWAGRVKTFRKASDVEKGTAGL*
Ga0006764J43180_101973	Ga0006764J43180_1019731	F100491	SDRQAACSPTGMHGPNVASGTGETALCFPLKVLANRGSLRRCASALHSDRSPLLDATFRSTAPRTGLATDPRNCVNVPGLHLRNDPQIRSGPFGYVLPHPLCLLWLGGRDLHTNPLPNPTRLIARLRTSAPLRELSLPRDQSSQPDFELQSLPLQVARSSFAPRSAATVLW
Ga0006764J43180_102265	Ga0006764J43180_1022652	F023129	MKSNLRVKRRDPWPRANALPKAAADPELSGQDADQKSQTCLDPVREPVAQPPVQAS*
Ga0006764J43180_102397	Ga0006764J43180_1023971	F018876	VPSARLSFGLPASFGSFVPTLDAWTKSPLSVECRLSSQAGEVTLRFRSAVLSSTEAVDAFAPLPLPVTSPVELRLASSFVRISFFGLAGDRFPFPLNAVAPAQPATKLLLLPNFASPALPGMDLPISLESSVPRLAPRSESPGSFG
Ga0006764J43180_102746	Ga0006764J43180_1027462	F023129	VHRANALPKAAAVPELSGEDADNKQSQTCLYLVRKPVAQPPAQAS*
Ga0006764J43180_103024	Ga0006764J43180_1030241	F044324	PKARKLEREDHLGIDGRAGDGDTLWIIAAGHTQHRREKIVNGDDGNDVVEVIRAEPEGAGTHEGIRMFVGGNTTADVADPGLEQSFEVDASQAGVGSNTDRKAAPTARKQRVSTRDHGWPGGGSP*
Ga0006764J43180_103121	Ga0006764J43180_1031211	F054493	TTNQGPRKGIAASKEEATSDGEGNSGAPRARDFGREHGKRKRGGAQASIADGRQAPRKETSAGDERTS*
Ga0006764J43180_103377	Ga0006764J43180_1033772	F015217	VTQHNVRRIEQALAFLSREVAQTKPDNTVMLSVISGTSVLAFTKVPGSAVTALTGLVR
Ga0006764J43180_103559	Ga0006764J43180_1035591	F027071	PQVTTELSQAIRDLSLSSILISSCPLIKSAWKKIGSNLISFYLHTHSKIAALPCGGAVSPNAIDNNIELKLTTTSLRKQLPLFVQRCHPPSASLAPILANLRSKYKRQQSNAQSGQRINPLRNYSAGSCLAPSRPLHQSPSSLRIRITGNINKAKLNNIGTSHLAKNCAGGSITLAGSLAVSNLTLLANHQTAMPEEISFDLLGPLIRRYCYLRSATASAGCPVNTTTPNKRANSRKYCYLA
Ga0006764J43180_103690	Ga0006764J43180_1036901	F016001	VFSRRFDPIPSWACLLQVFALDALEAPSRLLTPVVLMATLSVIVSIDLQRSDTELGVSLETAYLLEVSYLPAMLSCPNISDEVRRSASPVARFRLF
Ga0006764J43180_104098	Ga0006764J43180_1040981	F022652	SRVHGTIERTTRMLSVRSAAKCALSSVCCSPLLPFSLPRVNTANAVFGYRTLPEPVSRCGLSLTRNDTFAPFRGQCSRPAPSIPRRTPSRIRSIQNSIAPFGFEADPGRYPCPKPVFRADFRRSRGFSQPPLPFRPFRALRIKAFSRLPPHEARPARPRFPFAPLAVSFDSTPDQRLRFSASCPTNRS
Ga0006764J43180_104155	Ga0006764J43180_1041552	F005048	MGLKFEHTTPKAEDSIQDFVVETFASATTDNGRVALVVEPRHAERQALVRTLRELGRRAIGVATALDAVQMLVEEGAHVDTVFIEAVSESLPSLELVEFLSHNHPRIRRVLIGEQHEIAASWVAQATGEVHALLETPCDPEAVHRVLHRLQFTPNDAALS*
Ga0006764J43180_104191	Ga0006764J43180_1041911	F072008	VNFASPFSGDTCDQSNNGWWQQSTSSGGYTWPFLSSSRQQADGYTNSEGVISACVYVDTTLAPGTTPGKINVQAIVESPTQGGLYNSSGVAGNINGINPYYPLGNNLSLPNYLGVPNIVLTATITVVGPPASITVAAAPTSLNCGEKATITVTVKDSAGQNVSDRTRVELVTNFGGVIGGTTATLGPVSVAGGNVYPVSSSSAETFNGVATAYLLT
Ga0006764J43180_104481	Ga0006764J43180_1044811	F010442	MMHSSFFASLLVAALASTILADTTSSGNRQCPGGYDNGKQMNIGRYWYECRDGQVIPKGCLTPDDSRIDIDGTFDTNEYRMQCVMGQDGFLSLTYKACMHKGSEHDVGAQWDNGVAYFTCVKEGNNVRVITVGCVDQGKQMKLDDRVAKGDFIFQCKEATDGTPKINKVGCMQEGRKYNIGETFEGPKWWYTCTDSGAKVVGCMYQGHRLVDGDHFTEGDMMYSCRVRADKTFFEPFACLQREENGASIERKVGCFWVEGQGSNAFEYTCKPDNNNLISKVQVKCVYRASQGNFKLEPGCVQQAGDIAVGCLQASSGKLTIQTYSPDQMGSLPGLHKC*
Ga0006764J43180_104733	Ga0006764J43180_1047332	F019936	MSFTDPQTVTISAVTTPLPRTSVEENGSEYTSADGLIKLTASHDYGRRARRMLRIDTSKMAPDPFRPVENVKVSMSCYMVFDLPLAGYTATEALAVYTGFKTQYSAGSDALIVKLLGGES
Ga0006764J43180_104834	Ga0006764J43180_1048341	F082288	NNKTKNMISFLVLSSILGMALASTNAILTAQTANAQFVAKIGGPDTDQVNSRIIGTLLKPGFTNQYNLTMNGKTVPIQYSVLDGSLVGILSDPSRKSLDLAVNPQANGAALEVNVPRHVIDSKNAAGKDAPFIVKVDGNRISGEPSGICVGTCPNILNSFKETYNTNTDRVLTVLVGPESRFIEIIGNH
Ga0006764J43180_105346	Ga0006764J43180_1053461	F017082	DDAVYQCQETVNDGSKLVQVGCVKDGKQYAAGDAFEVGKYWFNCTQTGREKVVAKPAGCVANGKRLNDGDRYFDAGVAYECNIDGDKTSVRVMGCVQDDGGSQVERRLGCTWTEGQEPFQYEWACQNDAATNSAKKVQVRCNYKIGGGVYNIEPGCYRAVDKDFAGCINDGGKLKLQSFQGQDAEKSAQGAGLHAC*
Ga0006764J43180_105373	Ga0006764J43180_1053731	F076910	ATVPYVPKSSRTAGPLMVSRCVSTGAPPVLGGHGDRQLAGSVHTYRVCRGTETLGPSSEVTRLRRSRNPARAILLDLANDTDEHVRPGNPAPANGSPSSNRGRLEEKPITLKARPHRSTVAPITGPRLGGRGSKEAHQKWPDLGVAPRGEGSVLPNVLGAVTEQAI
Ga0006764J43180_105680	Ga0006764J43180_1056801	F040542	LMTKFLLMSAAAAALIATPTMAAKNISPRASGVVGFHGVKAPAHQVKNPAAPLCGTGFGAELPTPDGLIAWNDTSNGYNTAGGADFKCTLAKTKIKEVDVYGYNAPANPEQYNVTIYKNSGADGTDEPNDSKVKCAYTGVSAEGGGQYPTHTLSHIKLPTACKVKAGHYWVAVQNNDSAGPWYWEMTSTLGGSAQGDWDDVNNFFGSGCTSFNNDEYLQQCLGYT
Ga0006764J43180_105697	Ga0006764J43180_1056972	F027763	MALTDPQSITINAVTTPLPRTFSEGNESAYTSADGLWKLSLNHTPVKQGRLRHLLRFDHSKVTPDPYINTQNVKVNSAIYLVVDVPPAGYTNAEIMQVYNGFKALYTATSDAVITKLIGGES*
Ga0006764J43180_106630	Ga0006764J43180_1066301	F035161	NPNTLTFQKIDQFGQPLAAVFSIQQGPFWVEVAKVSVGPAPQQPVCNTAGTNPLNGTACAAGQVTPAPFATGLPNGQYRVVEVAGPNSYCTLIQIYNGNLSPNGQALTQPNAGTFLTQPVTVNLPDANPLDLQLTFVNSCIVPGGPSTATSQIAVVIGGSTPGLVNTSNIEIVPAPGSDDDARLDIRIRDSASIIIPNAHVTVLIDKGALAIRRDLAGFPNSGYDPIEPAPAAANFASPFSGDTCDQGTNGWWQQSTVNGNYTWPFLTTSRQQGDGYTNAEGVISACVYVDTTLAPGTTPGKINVQAIVESPTQGGLYNPGLGVNPYYPLGNNLSLPNYLGVPNIVLTATITVVGPPASITVAAAPTSLNCGEKATITVTVKD
Ga0006764J43180_106920	Ga0006764J43180_1069201	F035161	CVPVLPTGNSTIAIRKIDQFGQPVAASFSIQAGPFWNEVVRLNLGGSVVQNPCDTAGTQGSWNFVNTLPVITGQTSAQFGFSCASVGVVTPSTFPNGLPAGQYRVVEVAGPNSFCTLVQVYNGNQANNQQLTLPYSGAMLTQPVTLNLPSANIYDLQLTFVNSCVVPGGPSTATSQIAVVIGGSTAGLVNTSNVEISPAPGSDDDARLDIRIRDAASIPIPNAHVTVLIDKGALALRRDFSSFPNSGFDPIEPFPAAANFASPFSGDTCDQSNNGWLTQSATSGSYSWPFLST
Ga0006764J43180_107095	Ga0006764J43180_1070951	F088039	MTGNTQTLNPMTGTNAYANGAYGTTQPGFWGSSTPTVFGTQAFQTQVPMNQLNPFTSSLIQQQPGLFGQPTQQWQTGFGQPSLQWQTGFNSPQIASQAILNAALQTTSPQVINAALQNTPPQVINTVLQTTPPQVLPYILNALACQQVCQQVLQQNPQAIQTIAQQGINQPLFGYGTTSQGQYGFGGTIGGVGFNQVPFVNSYQGQTVPQQFLQGQTVPQQFLQGQNCAGCAPGMQQWVPNSVGFQGGFGQVVPQQPWFN
Ga0006764J43180_107227	Ga0006764J43180_1072272	F008172	VAPGQRTVKSGGRPGANGKDAETQVTNVSLPGPQAGACKRQPKRAKRPHSKFSDRKALDGPAMRPTTPLAVENGVGKLAAKARQMPAWERENGELPPP
Ga0006764J43180_107749	Ga0006764J43180_1077491	F001758	VTGERLSQAGWLGPSQAGAKVSGGAKVSGAEAEFTSSSGSVRALSVNAKKELGGEERLETAPNRIK*
Ga0006764J43180_107749	Ga0006764J43180_1077492	F000734	VKTFQNAGDVKNGTAGLRTKSNLRVKRRDPWPRANALLTAAADPE
Ga0006764J43180_108330	Ga0006764J43180_1083303	F060965	WWLGILTPAIRAIRYSSINNELTLALFMTWFRANNTNYALALDDLTVAANPLD*
Ga0006764J43180_108503	Ga0006764J43180_1085031	F002654	LNYQTFNDKVVCQKGNSPEQVFKVPKFLLSESKEVFKLYNQEIGLEAAIF*
Ga0006764J43180_109730	Ga0006764J43180_1097303	F027072	MKRLMSLWSRVAEESATLCCTSAHRDINTVAMRIEHEGWSFMTITLPDLGKSFQRWLDQ
Ga0006764J43180_112242	Ga0006764J43180_1122421	F099329	GVNDTQTTDKENNVEDKKDGHRAYTAERKAKLIQLTEDLRSSDTLLTEFVGKPDPTAAKYGLKLTEEEVTALAALAAGQGELTGEALTAVSGGSNTNCGCNDV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002864: Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_7 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences