3300002843: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Greensprings

Overview

Basic Information

• IMG/M Taxon OID: 3300002843
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111381 | Gp0095383 | Ga0049949
• Sample Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Greensprings
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 837633
• Sequencing Scaffolds: 32
• Novel Protein Genes: 43
• Associated Families: 35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria	5
Not Available	5
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Stormwater Retention Pond Microbial Communities From Williamsburg, Va
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → pond → stormwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Jamestown, Virginia, United States
• Coordinates
  • Lat. (^o): 37.248966
  • Long. (^o): -76.787831
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004345	Metagenome / Metatranscriptome	442	Y
F004517	Metagenome / Metatranscriptome	434	Y
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F009394	Metagenome / Metatranscriptome	318	Y
F011059	Metagenome	295	Y
F013294	Metagenome / Metatranscriptome	272	N
F013741	Metagenome / Metatranscriptome	268	Y
F013763	Metagenome / Metatranscriptome	268	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
contig_10005	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11699
contig_10007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	9949
contig_10013	All Organisms → cellular organisms → Bacteria → Proteobacteria	8555
contig_10014	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8518
contig_10019	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6225
contig_10022	All Organisms → cellular organisms → Bacteria	5464
contig_10035	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4190
contig_10036	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4190
contig_10039	All Organisms → cellular organisms → Bacteria	3785
contig_10052	All Organisms → cellular organisms → Bacteria	2989

Sequences

Scaffold ID	Protein ID	Family	Sequence
contig_10005	contig_1000512	F047566	MFGFLKDRSGQILAVVAALLWRGFGIFLFILGGSMGVGAAVTGSWLTGVLVSFGTLMIGVIGSLGYAIATTGKVTPADVSRSANDAIKKAQEQAEADKGKK*
contig_10005	contig_100052	F031399	MNQITLRILLADGTQLEVNTSAGDIVKWEAHFDLGIDKLERASHLYYLAWLAVSRLNKTSLGFDAWVETISNVEVNDPKA*
contig_10005	contig_100059	F013741	MSEQPKPSNQTLLLQIVRDIEILKANSIQILQSSQDHETRIRELEKSVNRNAWIPAVITAVITSLIVYAITKGVGA*
contig_10007	contig_100072	F004517	MFTKEKIKPENSLLKPHKETTLEKQQRLRLERRAAIADKLKDLDKEVK*
contig_10013	contig_100133	F042791	MFSTAFQANAFQNNAFQVYNPPPPDNNRVGGDDAWYTQEELRRIQKLHQKIAARQRLLEKATKDANAARKQAIRDLVSPVAKVKQPKVQSTQEVKADIPLAETEELQRSISYLERQRDNILQAVAYRQEYARIQANLRILEAKRLEELDDEESVLILLH*
contig_10013	contig_100135	F037693	MALVKKVVTCVHCKVDHEEYDETQFNDREKYLAYWNLPFEGPEADAAWAEKENMTFRPAPTVIPDIEGHISMADGTWVDSRSKHRENLKRNNCIELGNDVPTQQKKHELSRSEREHLKRTLAEVTYAKLR*
contig_10014	contig_100144	F009394	MTETEARLNSHEAVCAIRYEAINARLKRLEQILMGTAGFIIVFLLTQMFK*
contig_10019	contig_100191	F054521	KMSEEKNVEQTPIKDFPMERAMMSDMVALDIMGAMIQSDLAKNLEHPMSQITAIGFAFAKEFLRQREEWLKPKEETKEEPIKPASPIIQV*
contig_10019	contig_1001910	F011059	MSKMTYEEWENRYLREEGSSYDREFRYQFISDYLLNPNLVKVAEKHKVPYATAVSWKTKNWWFDMAEDILQNHKEELLAKQRKIIEKTYDELGDRLNNGDEFYYPESGHVRVKVKANHLATVADSVLKANQLLQGKATQISHVTIESLADKLRTITQEAIDVTPSETIPQIEQSHSDSTSD*
contig_10022	contig_100222	F023327	MQIEFMCAVVEDYIYRMKGVQVRIDRRAVAADGRQMAMLMNAYQIAHGDKEHSNL*
contig_10035	contig_1003510	F029048	MLNHIKDVIGDKCIVYNETYNVDEERQLIAFEPNDLAAIIKDVILTCADMCLDESNRQEILK*
contig_10035	contig_1003516	F007166	MEQRLEIALDNMEYGTELSQDDIDVIRAACGKPNNKRNVLLQSVFDDFGSIFGGSHA*
contig_10035	contig_100352	F014955	MDIEKYIVAATGLGYLVVGLAQYFKGSPSNALIWLGYAAAQVGLWMNLK*
contig_10035	contig_100357	F007848	LFIRFCFGLYFCYGIPAKAQTVQLTDSRGYSMGTVQITGNTAQFVNPQGYITQTATLYPNQVVIQNPSLSNNPIVIGQPSYSVPPSPSTPPSPRVMQ*
contig_10036	contig_100362	F093302	MALTVAQIIDIAKISQYLATLDVENGSLFSPRIAPETPQILYNERSAVEWMYDHDPANTSLVETSNYLYSLCRGYNLQAQQISGTGGTITPVNPTEIPNPYDFEVSGTSIIPAGATNATLSAFIGFNLLFVRNGIPQSTLNIGGNSYFSWNKALGIITISPAAIAGEQFQLYPV*
contig_10039	contig_100393	F029048	MLSHIRDVIGDKARVSTEPFGVDEERQLIAFEVNDLAAVIQSVIQTCADCCIDESSREAVLELLN*
contig_10039	contig_100396	F007166	MSELHQVMLEMEERLEEALQNMEFGTDLSQDDIDVIRAACGKPNNKRNVLLQSVFDDFGNIFGGNHAAK*
contig_10052	contig_100522	F061680	MQVTIGIEVAYFDYDDVHGNCEFKITNITDEDYEVEISNVLATQVIGEVELDYILTDTELDQLKEEIMWCIQDTNLVRDMQDFDNEFDEDAWRYDA*
contig_10052	contig_100526	F092029	MKYTKYYRMWLEDKVEPEGGTWCYMGMDEKGFLWQLNFQYKENEQPETLEQYLRWGYKIQEL*
contig_10074	contig_100742	F001883	MARYANTGEFNVLYPTRRKMANILKRIIRNDVVDGEGTLVESIRINAKVTGFQKLEIQIVAMYYFIFLNNGAFLWNGGVITPRDFVAQFTEELNNAGITAEIYRQYTEWLTKKYPLVQAVEVLEKQQKIVYTFEAVDPPAGFTPGFPLDV*
contig_10074	contig_100744	F033725	NMINVLNRDIPNQLDEITIEQFENITEINNDPNLDPIDKHLKVFAYLGIPESEFWDYDVADFINVVKEFNSLEHKEHPTVEEIELEGYTYKAQMKLTVRDTKMIEKAALHKEKGYISEMLAIMFKREDLTAAEHYAEAHIKHKAKLIRKLTADVAVPYLIFIAEKISQQVKNNASTEAVEPSNA*
contig_10103	contig_101031	F086796	MIDYCEPYLKIQKLVKAYHNATLKQNYEKATKIAHELADETIRLEIASIKQLKNQWVKQ*
contig_10109	contig_101092	F036591	MEMKVAQMKMMTERNTQVLLAHINNGAKIEVARIGSDESNGEMAYMTEQDMAKSMESPMQPIADAIGQGNMQMAQAISALVDTINAQHNRPKTVVRGQDGKIIGVQ*
contig_10112	contig_101123	F086796	MTDYSENYLNLQRLLKAYHNATLKGNFEKATKIAHDLADETIKLEIASIRQLKNQWLS*
contig_10112	contig_101125	F014955	MEVRKQRGMGMLEKIIVASTGLGYLVVGLAQYFKGSTPNALIWLGYAAAQIGLWMNLK*
contig_10115	contig_101154	F035311	MYVVINREGEVFTGLIRGYTQWSYDWKSAKPLHVENTTRLLEENIGAELINEEEII*
contig_10119	contig_101192	F035679	MRYLIPILILLSCSAPKRAQWHYKKALKNGLQVVQDSDTIRITTVDSFPVIQNDTIVWEKFYTTKDTVIQFNNVYVPKTRWQTRIEYRYKTKVERIRGKTIYKTAQAKEVVKYKILWWPMIVAFIFGILLRFLIQKGLLDRIALLFKL*
contig_10125	contig_101252	F036591	MEMRVAQMKMMTERNTQVLLAHINNGAKIETARISAGTDDGEQAYMTEESLAHAMEHPMQPIANAIGQGNAQMAQAISSLVDTINAQHNRPKTVIRGQDGKIIGVQ*
contig_10134	contig_101344	F066497	MNQAEYQDWKLHPVTVEFFSHLKKAKQETMESWANRQFTTEGDNQFALGGIYAINQIIDLDYADIAGE*
contig_10148	contig_101482	F029048	MLSHIKDVIGDKARVSTEPFGVDEERQLIAFEVNDLAAVIQDVIRTCADCCTDQQSREAVLDLLN*
contig_10165	contig_101652	F061482	MSGYDSWLESGAHAGEDEEIYIEERTYELMKLGEDYDPTDVGRMSEAISEASEDDQEIIRDFIERKEWDKLGAKLFYMSYDYMEKFAESAAQREVEQGLHL*
contig_10174	contig_101743	F004345	MLGKNIVGATGLGYLIVCLAQLKKGATSNAMIWGGYAFAQIGLWLALK*
contig_10175	contig_101754	F017287	METYTRKDLQEKAPCDNCDQFEDCRQNEWACRAFSYFVLHGTFEEYTLRHPTRGMFNKIFKEDEKALKNYLKSVKAKGNQNDLFD*
contig_10176	contig_101763	F085148	MNSYKQRIEYLAQSYIAIARRFHGWDKVKELIEKHPATEADVKKRIKEILAK*
contig_10229	contig_102291	F099162	MEVSGEIDPVKYGVLWQKVQDMDKKMDKMETQLEQLVALANKGKGSFWAGMVFASMLS
contig_10320	contig_103202	F091218	MPETAKIVDSFRTVFPKIKVLYAEEGPYRVGKKPDPSKYVVPNIGYLSDKPTEKKGRKK*
contig_10364	contig_103642	F086339	MAKGTATSNKMMPRMDTYGGQNNPGYQPPEGSAGASAFGAYSTKSNPLSVPKKGSDIGPGYGNADRMKIMREKDVQEKKESLRGMPC*
contig_10367	contig_103672	F013763	EGQGYIYIGEYFHKFGGVVPTEKKIGKIDDLLKIPQIDDYAFSLDFHTPDIYLVEDVDTLYTAITVLLSHDVIKEDWFADSDGDLKERVASFMKALGYGEIADVDGDGIPDHLDDVIG*
contig_10369	contig_103691	F096907	MTREEFYDKAVLAAFQGLLAASGHYRDELIKNPCEYVANAARQYADELTEQLYGPELPVIKERLF*
contig_10400	contig_104001	F013294	RMLLSILSIHAFSCSKLGLSTMVRSLGSAFVLQLGERYGIKILWYGMKKLLDKYINNHYHEVRAYTLYFLTKLGSKIEADTVINNSYLHVLTINEDADSEDQVKSYLLNTIKYQILWNTSLSHKDDRVTSMEYEPSDEADDEQDLQAKILEDKIYSTHKGMIEIYRSQISDSVHRIVFEAYIDKGYTTARSMAKYFDIPVTSAHYLITEIKQNLRN
contig_10462	contig_104622	F085148	MNSYKQRIEYLAQSYIAIAHRYRNWEVVKELIERNKETEADVKKRIKEILRK*
contig_10480	contig_104801	F007848	MKDFIGSCLLGALLGCMIAYGVPAKAQTYPMTDSRGYNVGTVQIQGNTAQFVNPQGYTTQTATIYPNQVVITTPNGVTTSVVGNAGYTVPSSPSTPSSPRVMQ*
contig_10495	contig_104951	F051645	MNSDRFYTPLLYVVKKHGSLNGACKALGISHQRISHWNKHKSIPDAWKVILHQKYDIPYKRFFEQLEK*