3300002842: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Junction Rte 99 and John Tyler Highway

Overview

Basic Information

• IMG/M Taxon OID: 3300002842
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111381 | Gp0095385 | Ga0049951
• Sample Name: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Junction Rte 99 and John Tyler Highway
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 522250
• Sequencing Scaffolds: 19
• Novel Protein Genes: 21
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Stormwater Retention Pond Microbial Communities From Williamsburg, Va
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → pond → stormwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Williamsburg, VA
• Coordinates
  • Lat. (^o): 37.260193
  • Long. (^o): -76.737526
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F013741	Metagenome / Metatranscriptome	268	Y
F014132	Metagenome / Metatranscriptome	265	Y
F016523	Metagenome / Metatranscriptome	246	Y
F019966	Metagenome	226	Y
F024310	Metagenome / Metatranscriptome	206	Y
F027491	Metagenome / Metatranscriptome	194	N
F031034	Metagenome / Metatranscriptome	183	Y
F036664	Metagenome	169	Y
F041636	Metagenome	159	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
contig_10001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	16048
contig_10009	Not Available	5998
contig_10017	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3754
contig_10020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3574
contig_10023	All Organisms → cellular organisms → Bacteria	3327
contig_10029	All Organisms → Viruses → Predicted Viral	2953
contig_10031	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2825
contig_10061	Not Available	1765
contig_10071	All Organisms → cellular organisms → Bacteria	1576
contig_10128	All Organisms → Viruses → Predicted Viral	1136

Sequences

Scaffold ID	Protein ID	Family	Sequence
contig_10001	contig_100011	F093302	MLTVAQILDVAKISQYLATLDVEKGSLFGQRVVPETPQILYNERKAVEYWYNLDPSDSTLIETSNYLYALCRGYNLQAQQISGTGGTITPVNPTQIPNPYIFEVSASSIVPTGATSATLTAFIGFNVLFVRNGIPQSTLNLNGDSYFSWNKNLGLFTIHPAAVGGEIFQIYPI*
contig_10009	contig_1000915	F036664	MYQRPNKISDLIEAIQSETEWLETSQGDEIECIGIENLEGILSRYFNTHIKLTQ*
contig_10017	contig_100172	F088887	MPLWLRKTTFYMIKEYYDKQNEEAEKQQNMMKNKGKSEISRPNVTPKSTYTTKAD*
contig_10020	contig_100205	F047566	MKNKLKTKLLNVYEVVAELTWRGFGIFLFILGGSAGVGAALTGSWINGVLVAWGTLMLGVVGAIGYAIAVTGRATREDVAKGSADAIQKAENQANKDTK*
contig_10020	contig_100207	F019966	MMSDFEVSKEYKLEMLNKRLEALNIEGWHNEEAKLIAIATSNSEEQARLENNIEIIKNAIQAVKEQIQAL*
contig_10023	contig_100236	F077217	MNHAIKDVIECKYTVKTFQERGYDEEVPIIGFAVEDLETVIKSVVLACADKVSDEQERRNILSLAS*
contig_10023	contig_100238	F027491	MDDLQELHNDMMAEQERLEIALDKAEDGDMLTLAEIDLIRFHCGLPNKRRVNPVLTAIVDDFSNIFGGKQ*
contig_10029	contig_100295	F091302	MKGISKAINHGIFQSRNYDAIVTMANDILMPNDWLGRMVQAMNTIPNSGMIGIHTVEGITEPVNINGIQVHLQDAVFGNVLIPMEAINKIGYFSEAYDPYGMQDRDYSYRLHMTGHLNYYLSGLRAEHIGHDVGQDTPYRKMKDEGLSRCDYLWAEQTKKYQDENNYTIFQSEYL*
contig_10031	contig_100313	F013741	MSEQTPKPTTQGLLLQILRDVEVLKANSIQILRSSQDHEKRIRDLEKQANRNAWIPPLITAVVTSVLVYLISKGFTQ*
contig_10061	contig_100614	F101036	MKNKKAKMKSLKRRMNRTAILSFYNKRTRRGDVQRLAEETGYSESHISNVKAGRRRITDDIADAMYYLSRRRVRQGEFA*
contig_10071	contig_100713	F081081	LTDEEFKYQSGVRLLCKWRSEWGLAKFREYLSNHKLDSNLLNGFADQWKLGNKGNWGEWIE*
contig_10128	contig_101283	F014132	MQINRDELYKLYMEWVEFISEECEWKTSFGPEEIVHSIANILEQNPQLINNGEYTQKNC*
contig_10146	contig_101462	F000368	MDAKMKAMVATWARASIASAVALYLAGETDPKKLATAALAGFCGPLLKWLDPKEKQFGIGSKK*
contig_10152	contig_101522	F077217	MNHLIKDFIDQKYTVKTFQERGYDEEVPIIGFAQDDLETVIKTVVQACADRVNNSEDRKAVLSLM*
contig_10174	contig_101742	F090385	MSAQTDMKVISVLLDEAMEMGLEVEVIYSALKTMREDDSITPAQAFQEAINEWVK*
contig_10190	contig_101903	F016523	MYVIVSPRIGTPGDPYKPQDGINVDALLEGGLISTDKPKKSSKVKAEPVEEK*
contig_10197	contig_101971	F024310	MKIKVTELGPGYSIFGNKGNVWSDTAHIYQNGVGNMCGTPALSSNWAQIEQLEYVGCPKCIEAYTSQK*
contig_10198	contig_101982	F093838	MVKTKRKMKRKVPVFRVTAEPGADYSVLTTFPEIKQAVLDEAIYAIKDGIEKHKSSISLFEIANSEYYIELSKEKWKPILEHLIEHYAEKEEYDKCVEVRDLISKL*
contig_10226	contig_102264	F041636	MAQLTDDQIEEIVEKVTERVIEKVYTSVGKSVVQKIFWVVGLAAISLVTYFASIGHIKVGG*
contig_10245	contig_102453	F031034	MALYKQGSADAQIKIGAGKLYGVYISSTSSGTFALYDTATGSTSDPKIVATVTPSAGTQHVSFPAGLWFSNGLYIDIGNTIEYT
contig_10278	contig_102781	F080975	QEKLLRQATTQASKAQQVAKAKATAVSPKSVTPNGTQAKVEAKDRRSLLMAQMTEAESGRL*