3300002780: Piglet fecal microbial communities from UC Davis, California, USA, of a weaning piglet - sample 1

Overview

Basic Information

• IMG/M Taxon OID: 3300002780
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111377 | Gp0091640 | Ga0048151
• Sample Name: Piglet fecal microbial communities from UC Davis, California, USA, of a weaning piglet - sample 1
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 281284854
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Piglet Fecal Microbial Communities From Uc Davis, California, Usa, Of A Weaning Piglet
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Piglet Fecal → Piglet Fecal Microbial Communities From Uc Davis, California, Usa, Of A Weaning Piglet

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: University of California, Davis, USA
• Coordinates
  • Lat. (^o): 38.53
  • Long. (^o): -121.76
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099269	Metagenome	103	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
s1d14p1_10226845	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3359
s1d14p1_10937184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	621

Sequences

Scaffold ID	Protein ID	Family	Sequence
s1d14p1_10226845	s1d14p1_102268456	F099451	MEIKNVGQLRKIIENLSDDYEIEMRVRRKLSDEELKECRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSKIN*
s1d14p1_10937184	s1d14p1_109371841	F099269	VSVQVGELLLLDDLGDRAGGASVLASATGDAGVLVSNGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*