3300002757: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-A

Overview

Basic Information

• IMG/M Taxon OID: 3300002757
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072140 | Ga0007265
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-A
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3741466
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.42
  • Long. (^o): -89.32
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011352	Metagenome / Metatranscriptome	292	Y
F030842	Metagenome / Metatranscriptome	184	Y
F094256	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25524J39351_100154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2618
JGI25524J39351_100297	All Organisms → cellular organisms → Bacteria	2029
JGI25524J39351_100306	All Organisms → cellular organisms → Bacteria	1997

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25524J39351_100154	JGI25524J39351_1001543	F094256	MRALTSNEIRIARLRSEIAHLEARYDGVFPPGVYAVLEGLRRKLAALHKS*
JGI25524J39351_100297	JGI25524J39351_1002972	F030842	MTTHSDHPTTNTEDAAFDATMKITGVVIVLLVIAGMAVWYIS*
JGI25524J39351_100306	JGI25524J39351_1003061	F030842	MTTHSNHPITNAEDAAFDRTMKIVGSVIVLLVIAGVALTYFYS*
JGI25524J39351_100306	JGI25524J39351_1003064	F011352	MPRYYFQLTDGKQVLNNHQGVDLAGNAAARDDAVVLARDLKHGNAMPGWNWTGWFVAIMDQHGHKVDEVPIMDV*