Sample 3300002650

Basic Information
IMG/M Taxon OID	3300002650 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056666 \| Ga0005470
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF119 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF119 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	4718495
Sequencing Scaffolds	31
Novel Protein Genes	34
Associated Families	32

Dataset Contents

Total Genome Size

4718495

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	29
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → solid layer → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.471116	Long. (^o)	-72.17263	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.471116

Long. (^o)

-72.17263

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001758	Metagenome / Metatranscriptome	640	Y
F003269	Metagenome / Metatranscriptome	496	Y
F003427	Metagenome / Metatranscriptome	487	Y
F004473	Metagenome / Metatranscriptome	436	Y
F006591	Metagenome / Metatranscriptome	369	Y
F011395	Metagenome / Metatranscriptome	291	Y
F015340	Metagenome / Metatranscriptome	255	Y
F016923	Metagenome / Metatranscriptome	243	Y
F017604	Metagenome / Metatranscriptome	239	Y
F022827	Metagenome / Metatranscriptome	212	Y
F024561	Metagenome / Metatranscriptome	205	Y
F035644	Metagenome / Metatranscriptome	171	Y
F047514	Metagenome / Metatranscriptome	149	N
F049452	Metagenome / Metatranscriptome	146	N
F055496	Metagenome / Metatranscriptome	138	Y
F059694	Metagenome / Metatranscriptome	133	Y
F060086	Metagenome / Metatranscriptome	133	Y
F067292	Metagenome / Metatranscriptome	125	N
F067447	Metagenome / Metatranscriptome	125	N
F068857	Metagenome / Metatranscriptome	124	Y
F070743	Metagenome / Metatranscriptome	122	N
F076700	Metagenome / Metatranscriptome	117	N
F078064	Metagenome / Metatranscriptome	116	N
F079435	Metagenome / Metatranscriptome	115	N
F079670	Metagenome / Metatranscriptome	115	N
F080954	Metagenome / Metatranscriptome	114	Y
F081239	Metagenome / Metatranscriptome	114	Y
F082272	Metagenome / Metatranscriptome	113	Y
F089697	Metagenome / Metatranscriptome	108	N
F093895	Metagenome / Metatranscriptome	106	N
F104202	Metagenome / Metatranscriptome	100	N
F104505	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005470J37258_100044	Not Available	636	Open in IMG/M
Ga0005470J37258_100055	Not Available	873	Open in IMG/M
Ga0005470J37258_100205	Not Available	591	Open in IMG/M
Ga0005470J37258_100210	Not Available	595	Open in IMG/M
Ga0005470J37258_100323	Not Available	579	Open in IMG/M
Ga0005470J37258_100346	All Organisms → cellular organisms → Eukaryota	1039	Open in IMG/M
Ga0005470J37258_100380	Not Available	588	Open in IMG/M
Ga0005470J37258_100432	Not Available	725	Open in IMG/M
Ga0005470J37258_100455	Not Available	603	Open in IMG/M
Ga0005470J37258_100633	Not Available	765	Open in IMG/M
Ga0005470J37258_100636	Not Available	618	Open in IMG/M
Ga0005470J37258_100741	Not Available	706	Open in IMG/M
Ga0005470J37258_100747	Not Available	795	Open in IMG/M
Ga0005470J37258_101015	Not Available	826	Open in IMG/M
Ga0005470J37258_101166	Not Available	519	Open in IMG/M
Ga0005470J37258_101330	Not Available	874	Open in IMG/M
Ga0005470J37258_102132	Not Available	761	Open in IMG/M
Ga0005470J37258_102177	Not Available	613	Open in IMG/M
Ga0005470J37258_102369	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	520	Open in IMG/M
Ga0005470J37258_102404	Not Available	558	Open in IMG/M
Ga0005470J37258_102454	Not Available	569	Open in IMG/M
Ga0005470J37258_102735	Not Available	573	Open in IMG/M
Ga0005470J37258_102816	Not Available	706	Open in IMG/M
Ga0005470J37258_103311	Not Available	898	Open in IMG/M
Ga0005470J37258_103417	Not Available	1283	Open in IMG/M
Ga0005470J37258_103761	Not Available	653	Open in IMG/M
Ga0005470J37258_103965	Not Available	550	Open in IMG/M
Ga0005470J37258_104164	Not Available	771	Open in IMG/M
Ga0005470J37258_104507	Not Available	803	Open in IMG/M
Ga0005470J37258_106154	Not Available	561	Open in IMG/M
Ga0005470J37258_107821	Not Available	635	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005470J37258_100044	Ga0005470J37258_1000442	F059694	MEFAQAKAFLGEGKAVTSERFRSGEKSKAAARLEAMKRKPDKPVFGELTDEAHGAPERSAQYRACR*
Ga0005470J37258_100055	Ga0005470J37258_1000551	F089697	GVSILITRSSAGAASSGSPSGRPPAFAGAATSGCAGFQDSDLRRCPALQLDRWPTIRLGSVSCPSARPAANLRFASGVPLFRSTFGDPSSLRLTILASSGLRPTILVPPGLRRMALPPARPTTYLRFASMPFFSSAGGFIWLAPYAAPAPRLAPRPVCTGCFTLRLHRP*
Ga0005470J37258_100205	Ga0005470J37258_1002051	F070743	LPI*PIEQLALPTGMRGQSLACSVAEALPSCSPQRLLARHGSVRQSSLALLPARSHRLGTAFRSPATTVLFREPPWRGQRSWPIPSALILNLSSSPFGLELPPSAAFVTPPGAFRAQDPLPSFKPRTLKRPSNFRSPSGLSSFRIEALGQRLSLRSLPFVTSPIFLRSPKALINFGNYALSDHRSRFASVHQAFCSL
Ga0005470J37258_100210	Ga0005470J37258_1002101	F076700	AFQSSLAVQPVLRPPATPVAALQLSLVLGSSGCAGTVVLTCVSALHSGSTSGQPSGSDRFRVLRLDRLQTSDSHRLFRSSARPLAIYQACARSWFHRACAQQSWFHLARAAWPFLRLGRQPTSDSHRCRSSARLAASSGLRLMLPLPLVWLRVQFAPVASPYAFTGREPLGLRLVAPSPAEPLMHSLFPPNLASS
Ga0005470J37258_100318	Ga0005470J37258_1003181	F016923	FPNASAPFPVLLTAPCLLSPSGRSRRSARSPAGMHGQNLASGNGVTALCSPRPILFSYGSMLWCASAFTRSGRSSILDTAFCSPAATADLSVRPRSRVNAPGLYLRTDPKIYARPVRLRAPAPVVAFLSPSGARSSHVARCQVRNQNSLSVLKPPLPSRTSQSFGIVALNLIPTREAYPCELPDFLSLPAAL*
Ga0005470J37258_100323	Ga0005470J37258_1003231	F004473	MKPVERFDPEGWKQPEGEWRSDDVARALEIGADNGLKAKNSPGFGFETKLSGGAFGRTGSQTITGVETKEQVGSVDLVMVAKASLWESERPFRVSGSGRMHIY*
Ga0005470J37258_100346	Ga0005470J37258_1003461	F060086	CCATAGQEDPFELDSNLLLSSGRHGEDREAVLLYDHETPLLGDLAD*
Ga0005470J37258_100380	Ga0005470J37258_1003801	F055496	SKPVGQLVLQPACTATRHPNGWDVSPFAPRRRLWPVTDHCSGAHPRFRFGRSLLFDTAFRSPTTMAFLANRLRSRVDVPGLHLQNRPDIGSNPFGLTLPPSHGFYCRLRDDRRMPVARVSYQSPPSVPGLSLPFGTSRSLGLTVLNPVPADETCLAGCPAFLRSPLPK
Ga0005470J37258_100416	Ga0005470J37258_1004161	F067447	SRVAGPNRPHFAPLRNCFLLDTCTKRYTRIAPWLTLSACAGRGLLRVQHFSAPPRSRIAPCSTLGFPHLARIAPCLALPALALHPDCSVFSTCRSVPCADCSALVPSRSAPATNYFVFDTWPSVSRPDASVLSTFLPCVDRRSLGAQLLALAPVTNYFVLDTPSVQRPDASVLSTSRPALPADYSALNASRCASYGSLHAWHLALAPVKDYSLLDTWRLAVSRERLRNPHLASCVELELLRVQHLVLPDGASDKFVQIHVVKPLELT
Ga0005470J37258_100432	Ga0005470J37258_1004321	F081239	AGSKGSGAEAEFISSSDTFARVSNAKKELGGEERLETDPSRIK*
Ga0005470J37258_100455	Ga0005470J37258_1004551	F016923	RSKPVSQFVPRPACTARTWHLKRWDVSPLLPAAGFGRLRINAPVRVRGVSRFSRSSLLDAAFRSPTEMAYLSVRHPSRVNAPGLPLRSDSKISAWPVRFRTPAPVQLFFSPYGARSTHSTRCQVRLQNSTTVIELPLPFGISRSFRIIALSPIPAAKACPCESPDFPSLPAAH
Ga0005470J37258_100633	Ga0005470J37258_1006331	F080954	QRSDLERTFPATQEDEDSIEAGDSLHGASRGIEDSREIGTPVPGATGDAKFSGMWSFVAG
Ga0005470J37258_100636	Ga0005470J37258_1006361	F078064	IAGCTRDCKSRRKSKVVKLADPEDARTGGYGILIDGLPAMQGSVEVRGASKAQPEVEAHGASRVSRNR*
Ga0005470J37258_100741	Ga0005470J37258_1007411	F067292	NLDESVVQPVLRPLATPEAGLQLSLATSSSGCAGFEPPTCVGCSTSGSTGGQPSGSDRRSVLRLDRWQAPGFRRLHCASARPVANLPTCVGVLPPARPATNCRLTSGADPSARLVPNFRLSPVVVAAFSLRLLPLRLLQLALAVARLPYRRRTSDSHRL*
Ga0005470J37258_100747	Ga0005470J37258_1007472	F003427	VAPGQRTAKAVADPELMVKTRIRSHKRVFTWFASRRPQTPAQASLEASLEISDRKALDGPAMRPKTPLAVENGVGKLAAKERQMSARERECGELPSP
Ga0005470J37258_101015	Ga0005470J37258_1010151	F082272	VKPGAKAQEGSLAAPEISKADASRKLSKLADPEDARTGGNRVLIGGLADDARFGGS*
Ga0005470J37258_101166	Ga0005470J37258_1011661	F079435	FTVRLSEPPACSVFDPQQKASDSGFAARRHRFSAAPGQCNRPILKNSLPAGAGNLKRPFTRPQRRFRHHCGVEAPDLPLRFPTGRLHRPVRFRTPCPKPVICLISRHSHNSHRHPLPFGSLEPSGSKRSTGPSTRSSPLLNARLSFAPRRILFR*
Ga0005470J37258_101330	Ga0005470J37258_1013302	F006591	GVGARHTLFPMRRSLGAPPSQVGGRLLDASSRGNAEFSVSWQDRRPDCSKRLLGEAFQHDSQIPCRGTAPYKVMRPLRHGLVTAVLEVGPRELPPERWPKGTGLASYPSIDI*
Ga0005470J37258_101559	Ga0005470J37258_1015591	F049452	VPSDPISSLAHHRHARY*ASRSGALCVPPLCSPGAVFSSPRFNASRPAAAFYLLSSTEPGARNGLSLASNGCHLSAASIPGSTFLACYFAPCLSASLPVRPFCSITAAGSPRSMATSLRLARCSSASRLDWPLPLPPLPFGTLTSLWIKVFSRSRHQSTRLPSTPDFLSLPDAGSISRVGLGSPFLVRY
Ga0005470J37258_102132	Ga0005470J37258_1021321	F080954	SDLERTFPATQEDEDSIEVGDSPRGASRGMQDSREVGTPVPGTAGDAKFGDSRSFVAG*
Ga0005470J37258_102177	Ga0005470J37258_1021771	F104202	MHGVTTACVRRDPAILPSQSLTLGCGLSLACNDCAPCGCLRGRVTVPGLPLCIFPGLPQCPFGSKAPRTGILSDSATDLHPQTRYTSLHSGLPHRLTVLSPLRDFAGFPSRLIPWAQRARPLNHTGNSPWYSARFSFPPQRLFYCGCHWIIVRDPLLFTRLAVP
Ga0005470J37258_102369	Ga0005470J37258_1023691	F017604	MSKGCAETVGDTSDDNPDPESPWKRRGQAARKGGRERGSDDEETGSPTRRESGDGCAE
Ga0005470J37258_102404	Ga0005470J37258_1024042	F068857	LRVLRSEDGNGLSAMNTPGGVKNAVEDGSWRPNGLEEEFRIPAKR*
Ga0005470J37258_102454	Ga0005470J37258_1024541	F079670	VKRTLKKGLKVLEMVKRERNKIITIDNSLKLRTILYFFFKKKYKFVFFNI*
Ga0005470J37258_102735	Ga0005470J37258_1027351	F011395	MAAWKQVVFSGERKAVARCGFQPERTQATSEALIRGFQKGLRGAEELPPVIRLQSSEPCMPASGQAELRITWN
Ga0005470J37258_102816	Ga0005470J37258_1028162	F024561	VAPGQRIAKSDGRPGANGADADTESQTCLHLVRELASANVSPSELRGLTRRFSRRKALDGPAMRPKI
Ga0005470J37258_103311	Ga0005470J37258_1033111	F104505	RECGLPYEGLRLEPDAQPPSPTIVLPLVRFTALQGFDMRSAAGVHWVPRARYALVVSDGAGGVHRSPSTARLRLRFHPLVSFAPLQSPPSRVRRRCLHRQLLPWGSRSLIATSPGGVRAPRLPALVAFPSAAFLTPSTAFAATRLVGLFHPTATSRVRSTGVFPRKQPRRLVVVASHALSPVVRRSADDVATAATNRRPALRALFRSRIRYRRFSD*
Ga0005470J37258_103417	Ga0005470J37258_1034171	F047514	DVLNRSMPESSEAVPRGAGEEDNMGTRDKAGVRAGCNACSDARPGRESQMEKGRQHIR*
Ga0005470J37258_103761	Ga0005470J37258_1037611	F022827	PGHPCGRPDLVFSTGIQDQGCHPRYLQRFRRSLSTSPFPARSSPARTSPPAFRPAARCPEGCSLVPRRALQPHPGVEVSLAFSLDPAPHGFRFGIRAIPAVPTRDTRFYPSELESACASYPAYSPCASIRLALRHFLLELAPYWSPNLPPLRASGSPSSLAGFRLRSYGPTVFPPSLLPAHFYMCRSSAGSSRFSFRTVALRLRSGCSEPTAFAESF
Ga0005470J37258_103965	Ga0005470J37258_1039652	F015340	VSFPGPQAGDRNRQFKRAQRPHSKSSDRKALDGPAMRPVTPLAVENGVGKLAAKARQMP
Ga0005470J37258_104164	Ga0005470J37258_1041641	F035644	MEPPTSPKELALSEYVHSDYMSESERDAEADIPVPDRLLPKQEYRRLVEALRLSQKIGLLVWLNRQGLLSLGGKERLLYLQAKASFEALEAGLRFARRLSEEXXLQSDFRHQMRELNRRPQSKRFRQSESRRIGVGYRDKGMLPEQSLRARRAAWEESFLPVESIPEDLLMVLQKYLPACLTEDGEWVDLSVFPGTFGSEGDSEMKTLLHPL*
Ga0005470J37258_104507	Ga0005470J37258_1045071	F093895	PELLVPIFSTSHRSGIAPCSTLAFCAIHGVLRGLHRMPALLADFSAINPLALCPAHELLRARHLAFCVEPGLLRARRFSPCVEPGLLRAQPSRSVKSPDRSVLFPSRFASLTDCSVVDAWLLVSRPERSVLLTSTLSRSPIARCATLCASHRARITSCTTLDLPPRAQIAPRL*
Ga0005470J37258_106154	Ga0005470J37258_1061541	F001758	VTGERLDQAGWPNPSKARPKGRASEAEFTSSSGGVRAPSVNAKKGLSDKER*
Ga0005470J37258_107821	Ga0005470J37258_1078212	F003269	MTNRRRVLTWSVSQWRNHQLKRAEKPHSKFSRRETLSGPATRPSTPLAVENSVGKPAAP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002650: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF119 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences