3300002645: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF101 (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information

• IMG/M Taxon OID: 3300002645
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0056632 | Ga0005452
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF101 (Metagenome Metatranscriptome, Counting Only)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2240654
• Sequencing Scaffolds: 19
• Novel Protein Genes: 21
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CNT372	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Sophophora → melanogaster group → melanogaster subgroup → Drosophila melanogaster	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.180244
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003427	Metagenome / Metatranscriptome	487	Y
F007739	Metagenome / Metatranscriptome	345	Y
F010404	Metagenome / Metatranscriptome	304	Y
F018933	Metagenome / Metatranscriptome	232	N
F021919	Metagenome / Metatranscriptome	216	Y
F024792	Metagenome / Metatranscriptome	204	Y
F029356	Metagenome / Metatranscriptome	188	Y
F031875	Metagenome / Metatranscriptome	181	N
F038498	Metagenome / Metatranscriptome	165	Y
F057922	Metagenome / Metatranscriptome	135	N
F059538	Metagenome / Metatranscriptome	133	N
F060406	Metagenome / Metatranscriptome	133	N
F067295	Metagenome / Metatranscriptome	125	N
F067944	Metagenome / Metatranscriptome	125	Y
F068857	Metagenome / Metatranscriptome	124	Y
F076700	Metagenome / Metatranscriptome	117	N
F089618	Metagenome / Metatranscriptome	108	N
F102643	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005452J37222_10001	Not Available	512
Ga0005452J37222_10019	Not Available	833
Ga0005452J37222_10028	Not Available	742
Ga0005452J37222_10081	Not Available	759
Ga0005452J37222_10213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CNT372	576
Ga0005452J37222_10228	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Sophophora → melanogaster group → melanogaster subgroup → Drosophila melanogaster	582
Ga0005452J37222_10317	Not Available	812
Ga0005452J37222_10349	Not Available	810
Ga0005452J37222_10611	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amphibia → Batrachia → Anura → Pipoidea → Pipidae → Xenopodinae → Xenopus → Silurana → Xenopus tropicalis	814
Ga0005452J37222_10656	Not Available	595
Ga0005452J37222_10913	Not Available	803
Ga0005452J37222_11046	Not Available	817
Ga0005452J37222_11244	Not Available	575
Ga0005452J37222_11337	Not Available	569
Ga0005452J37222_11372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	822
Ga0005452J37222_11421	Not Available	588
Ga0005452J37222_11464	Not Available	588
Ga0005452J37222_11854	Not Available	780
Ga0005452J37222_12711	Not Available	590

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005452J37222_10001	Ga0005452J37222_100011	F057922	DVFPSLPVAAFIRPRISAPEPICLFYLLEARVSKQTFARPHRLLPFESHRSEVNAPALSLRRNSELFFQSVRP*TPILACALTPSGYVRCPKPVTVFQAQSSQTSIQLPLPFRTFILPDRSAQSVARSEKLAFVSGPFSLRSPQASIIV*
Ga0005452J37222_10019	Ga0005452J37222_100191	F024792	VTGERLSQAGWLNPSKTASQETETGGRIHQFLWRRSHAVSDAKQELSGKGQN*
Ga0005452J37222_10028	Ga0005452J37222_100282	F089618	SRIAPCSTLSAPRWDLLANPTQSSRIRTLRPSATPAANLQLSLPLPPLAAPVSNIRLASAALPPARPRANPPARIGVFSPGSTGGKHPACTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNLRLAPAAAAAPTRAGGCPLLPHRPRTSDSHRLLFCRLCRSRLTQLALRALTSGWAFDAPLASTEPCIAS*
Ga0005452J37222_10081	Ga0005452J37222_100811	F018933	PRSTLDSLYRPRIAPLPVLIDRCCPPIARRSTLNALPRSQIAPRSILCARGDLGLLLVHHLEPSPRLRIAPYSTLCFPLRSQIALRSVLPAPCRSRIAPRSTIDAQCRSTDISVRLHSAPRAVHGSLRAQHFMLRAVHRLLCVRRLHFARFADCSALLASCLVSHADCSVLDT*
Ga0005452J37222_10213	Ga0005452J37222_102131	F018933	LRPDHVPSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPALYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPITDCSAFLTPCLVSLADCS
Ga0005452J37222_10228	Ga0005452J37222_102281	F021919	FQVTRSRSQTPRRHATAQSFASRIAGRHPFGSPPRFFKRNGSIPRGSPASFPSWNRHLEAAFHSPETTARFQTTISRSKLPTYSFDTLPCIRPARSDPDSPTRPGSPRRAQDHYRNPVA*LLPGTSNPSSDLHSPSGPFGPFKDQSVQPDFWPESSPSERSRLPITPQHRVYFISSMPDHRSRPAKRSVACCS
Ga0005452J37222_10281	Ga0005452J37222_102811	F102643	MGGRSHPKLNILGRPIAKKYSDGKVKRTLKRRSKVLETVKRETDGASNYPMGIQTIHSCGASQWFNRSTECTVRLLLGCYKRYLVCMFVNIKYERGINHGGRWTGHVW*
Ga0005452J37222_10317	Ga0005452J37222_103171	F007739	TKRTAKSKIDEVRFKIIPGDWGKVRSGWLTGLLSNRAARHGSGGRIHQFLWRCSRTVKMRMRDLAARGD*
Ga0005452J37222_10349	Ga0005452J37222_103492	F003427	MAKTRIRNHKRVFTWFASRRPQSPAEASLEASLEIQRPQGAGRPCYEAETTPLAVENGVGKLAANARQMPAWERESGELPSP
Ga0005452J37222_10611	Ga0005452J37222_106111	F059538	LVNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAVYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN*
Ga0005452J37222_10656	Ga0005452J37222_106561	F076700	ITRSTAGVASSSYPSGRSPAFAGAGSSGCAGTVALTCVNALHSGSTSGQPPGSDRFRVLRLDRLQTSDSHRLFRASDRPVVTRSTCVEPSFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLEWLRFQFAPAASPFAFTGREPLGLRLVAPSPAEPLMHSLFPPNLASPAKPSMSIPLPLALASSGIFQLNNFRL
Ga0005452J37222_10913	Ga0005452J37222_109131	F031875	MRSSNLSPFGDCDSSVLETCPDYLTQLAAVSNRDSLRDPSFAFDGVRTPPEESVNSASPNFRSVQRSRGNQPAPAFPRSPGIILKRSILILLFTAVS
Ga0005452J37222_11046	Ga0005452J37222_110462	F060406	LGELSSTTGCRVLRLPQRPTSRFRLRSRPLAALGRNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTSGELPTRIGCSSSGFTGFDSLGLRLVLLPPAGFLMHP*
Ga0005452J37222_11244	Ga0005452J37222_112441	F038498	AQGSRYD*ANHRHARRSIRGEFVFESSGLPLAVAVFQPAPGQCRNLVKLKSLRRNWKFETAFRSLATTFAHHCEVNVPDLPLHFHTENPAEPVRSRTPPLRSVFEAEPGRILRPLPVALRQFPALLRFHSISTPLEAYLQSPPDQSVQPSSSRGSLPDETLACPLLPSARSFRILPRITAFGAPYSARLIS
Ga0005452J37222_11337	Ga0005452J37222_113371	F038498	SRYD*ANHRHARRSIRGESVFEFPDHRSPSPFFNMRRVNAATCEKLKSLRRNRRLETAFHSLTTTFSRHCEVKVPDLLLRLRAENLTEPVRSRTPSLHSVFEAELGRILRPLPVVLRRSPALLRFHSISTPLEAYLQSPPDQSVQPSSSRGSLPDRTSAYPSLPLALSFRIWPSDHRSGCALSRPTNRS
Ga0005452J37222_11372	Ga0005452J37222_113721	F067295	TVEARRSENPAESTTGIIPGDRGKEGGSWCRPPLLGGNPRKGKITSSSGRCHDRSSNMIQELRGEARTRNRCRAESGSRGVSTRRPDAVTQRVQGCYCADQNAKVNPGGRRKPIPPPEGPGRPKAARARKGDADVGSERDRQIP*
Ga0005452J37222_11421	Ga0005452J37222_114211	F068857	LRVLSLGDGNGLSTVNIPGSVTNAVEDGSWRPNGLEEEFRISAKR*
Ga0005452J37222_11464	Ga0005452J37222_114641	F068857	LEDGNGLSAANTPGGVKNAIEDGSWRPNGLEEKLRISVKR*
Ga0005452J37222_11854	Ga0005452J37222_118542	F029356	MTTLILNPRGKDGGRPPARVAGRGEATTRKLDRLPGESPGTDVRKISAEAKAVRLLERSL
Ga0005452J37222_12711	Ga0005452J37222_127111	F010404	MQPFTLLQRRFALQQIPAAGSTLLAYIFKAALEFQLARSASRSRPRLAFFRLTKLDHCESPVANFLS*
Ga0005452J37222_12844	Ga0005452J37222_128441	F067944	LSPANDSVGRKHMSDQVNRAIAGESQLRVLEVALPSSASLSDTLLRRIAILLFILVAGLLTVFGYYASSICITVILAGFLAILFDPVVVILEKLHAVWRRRALCSQV*