3300002548: Polar desert microbial communities from Antarctic Dry Valleys - UQ255

Overview

Basic Information

• IMG/M Taxon OID: 3300002548
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053075 | Gp0060308 | Ga0006266
• Sample Name: Polar desert microbial communities from Antarctic Dry Valleys - UQ255
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67279807
• Sequencing Scaffolds: 41
• Novel Protein Genes: 45
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus tolerans	1
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	2
Not Available	5
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Polar Desert Microbial Communities From Antarctic Dry Valleys
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert → Polar Desert Microbial Communities From Antarctic Dry Valleys

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar desert biome → desert → ice
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Antarctic Dry Valleys
• Coordinates
  • Lat. (^o): -78.0486
  • Long. (^o): 163.8053
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000584	Metagenome / Metatranscriptome	1007	Y
F008258	Metagenome / Metatranscriptome	336	Y
F009385	Metagenome / Metatranscriptome	318	Y
F011711	Metagenome / Metatranscriptome	288	Y
F013996	Metagenome / Metatranscriptome	266	Y
F016802	Metagenome / Metatranscriptome	244	Y
F019957	Metagenome / Metatranscriptome	226	Y
F025631	Metagenome / Metatranscriptome	200	Y
F027713	Metagenome / Metatranscriptome	193	Y
F030320	Metagenome / Metatranscriptome	185	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24974J35850_1000002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	20661
JGI24974J35850_1000006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11280
JGI24974J35850_1000123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5822
JGI24974J35850_1000158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	5437
JGI24974J35850_1000284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	4629
JGI24974J35850_1000778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	3227
JGI24974J35850_1000995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2948
JGI24974J35850_1001186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus tolerans	2763
JGI24974J35850_1001557	All Organisms → cellular organisms → Bacteria	2465
JGI24974J35850_1001699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2381

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24974J35850_1000002	JGI24974J35850_100000226	F013996	VSRELLILVSYVEAALLVVILSIGLNQVRRRLVIISDGLKELAGMLATVESQHLRGLMGWVADINGPLSVIAGVLPGIAAKAALVVRKATGG*
JGI24974J35850_1000002	JGI24974J35850_10000024	F008258	VTQDPIESALEKLGSYGVPVNEIGERVGGLVGQLGALDPLEVMEQLGSIDPSQLDVGAMLGEAKEKFDALDPTMRVPLMIVAGFVGARVVRWIVR*
JGI24974J35850_1000006	JGI24974J35850_100000615	F030320	VESFALSERWNGWTDLVVMVDAAHAAVGAGPLDPLVCEVTLDWDDHETTIDSLTELQAILRSGAVPDSLEISVAHVVESEASLTLVYNGRWLQINGAGSDWERASNAYGAAQVEIALVAGITTFRLPSLPRDTVAETRKRLSETQD*
JGI24974J35850_1000123	JGI24974J35850_10001234	F019957	MEEVPHMSVTLTVVAASANQNAWSATLVVGLIVLLVVIALLEMLRRTVLKLEGNLWRTWVTGKAVVKNTATTFQLKNTRNSGEELVEELRNHG*
JGI24974J35850_1000123	JGI24974J35850_10001236	F025631	VTLALSMWWTVGWVIGTIVVLLVAVLLLAITGLAKKIDGVAQELVTDLDSIATKTGPLQNVAATNTAVKTITRGLRAARGGDPALNKYRTSPGWRD*
JGI24974J35850_1000158	JGI24974J35850_10001586	F027713	MDRFELSERWCGWKDVDVIFIAAHAAIEAGPFDPPICEVVFDEEFDPFTVDTFEEAREHLSRKRVLSMDVIVSHLDEDEARVTLHYSGDRLQLNGSGSDWTRARAAYDAAQAELAGHFGITTFKLPKLPRDSVAETRKRLVIEELEAALENVDWNIEDR*
JGI24974J35850_1000284	JGI24974J35850_10002843	F051753	VAGSNQAQPTPDPLAFVGVTDSVTDNGGGEQLELTLGPLYLVVVDDRVSAPLSGRAERFYRSPAQTLEAARCLAALLLDRGDELAGDGPWRRPLPGGQRHVCIVRAPVGPID*
JGI24974J35850_1000778	JGI24974J35850_10007784	F038495	VPIDQERRLAQAAATAHAAQDRGDDFAASDAWRRYVLIEDALRDPQDLLDEGVALSKLAIDLWLQR*
JGI24974J35850_1000995	JGI24974J35850_10009955	F008258	VTQDPIEQALDKLGTYGLPVEEIGAKAGALFGSLPSFDLFEIVDQVGAIDPTEIDFGEILGEVKARFDELDPALKVPVAVAAGFVGARVVRWIVR*
JGI24974J35850_1001186	JGI24974J35850_10011862	F063575	VRGLESTPRQLALPVGGRDRTDRMWESFSPAAQEQVLRLLAGAIARILEQRERER*
JGI24974J35850_1001557	JGI24974J35850_10015573	F039575	MSDDPIRTLLCSLTPAPFIWSPNGTVVIMDNHVQEAGGDSDAVGEWVEARGGMIDRTLPVVATRRGVTAIPKPVGKRYYVVPETALGD*
JGI24974J35850_1001699	JGI24974J35850_10016994	F039575	MSDDDEIRKLLSDLPTAPFIWSPPGTVIIMEEKVVEAEGDTDAVAAWVEAHGGDLDRTLPVVATRRGVTAIPKPKGKRYYVVPEKELIRSDAA*
JGI24974J35850_1002022	JGI24974J35850_10020224	F051753	MASAEDEHAGGEQLELTLGPLYVVTVDDRVSGPLTGRPARRYRSPPQALEDARCLALLLLDRSEDLAGDGPWRRPLPGGQRHVSIVVAPAGSIG*
JGI24974J35850_1003161	JGI24974J35850_10031612	F038495	AAAAHAAQERGEHWAASDACGGYALIEAALRDPQDPLDEGVSRSQVAIDLWLQR*
JGI24974J35850_1003230	JGI24974J35850_10032303	F063248	VPTRRGSLSSRAVAKKKQEKDPIRKLLTGVQPSLFMGNPTGTVAIMEAKVVAAGGDPEAVLAWVREHGGYPDKSFPIQKRNHLSPKQPESSKVFYVIPEDELK*
JGI24974J35850_1003230	JGI24974J35850_10032304	F039575	MSDEKIRKLLAGITPTPFIWVPAGNLVILVTNVEEAGGDPAEVQAWVEAQGGYEDRTLPVVSTRRGVTSVPKPVGKRYYVVPEKALAA*
JGI24974J35850_1003560	JGI24974J35850_10035604	F032127	MTLDEALLMLNDRLGHEVTAWVEVAHEMPLLITSGHLENWHLDVVDEAPAAGDSHFDLYGHYSLGDTRFDLSDAPVESVTERENGLTFRLQGGARLVVTWQPMLEPGTSSEGARAS
JGI24974J35850_1003907	JGI24974J35850_10039072	F098376	MAGIRTLATAILQKTNCQNKKAQLENFSDDFDNLIITLKTMNFL*
JGI24974J35850_1005377	JGI24974J35850_10053773	F032127	MAMSLDEALLTLNDRLGQEVTAWVEVKHETPLLITTGLLENWSHETSSSGTLEPTAAQHFDLRGHYSIADSRFDLSDAPVEMVSERTDGLTFRLEGGARLVVTWPPKAEGDLV*
JGI24974J35850_1005565	JGI24974J35850_10055651	F038495	MQQAAAQAHSAQDRGDHAAANEAWRRYVLIEDALRDPQDLLDEGVALSKVAIDLWLQR*
JGI24974J35850_1005712	JGI24974J35850_10057123	F019957	MTDVTVLALSSNQSAWVYTLIVGFVVLLVVIALLEGLRRTVKQLEGNLWTTWVTGKAVVRHTGTTYQLKNTRDSGDELVEELGHHG*
JGI24974J35850_1006182	JGI24974J35850_10061822	F098387	MTSVRETYDLPKRPPVPFRQYALMLVFPIASLALWFALPDSPITVALLAIAVLVTVFVGVGMIVRSRGLDEKPGREPVTTPSSENG*
JGI24974J35850_1007797	JGI24974J35850_10077971	F027713	AMDRFELSERWCGWKDLDVIFVAARAAMEAGPFDPPICEVVFDEEFDPFTVDTLEEAREHLRRHRVLSMDIILSHWDEDEARLTLRYSCDRLQLNGYGXDWERARAAYDAAQAELAGHFGITTFKLPKLPRDTVAETRKRLVIXELEAALENVDSGLDDR*
JGI24974J35850_1007866	JGI24974J35850_10078662	F063248	PGALRVAAVGPLSSRAVSKKAKDPIKALLAGIQPALFLGNPSGTVAIMQDKVVDAGGDPEAVLAWVREHGGFPDKSFGVRARQGFDMRPKAASKHYYVVPEDELK*
JGI24974J35850_1007984	JGI24974J35850_10079841	F098418	MRVRAMPWLMVLELAVTLRKHWKRLDPAERQLLSELVVKSQGRPNRLTTAERAHVRRLVAKLEPGQIARSVVPIGRRAAKGRRGR*
JGI24974J35850_1008047	JGI24974J35850_10080472	F016802	MRRHRLQAQARLEDGMSEGRIDGSALQLVTVCLSDEGAGEVSDEQGRPVAPAPPVVSHLRPSEARELAFCLLELAELCERRSEGWQ*
JGI24974J35850_1008047	JGI24974J35850_10080473	F064235	SVSSWPSAMIAVRRSIVQLRLDLAESPVPAVALWELVGEQQRQGAMSLLAALIAQTVAPEAVGDEAASLAGAGASGGRHE*
JGI24974J35850_1009137	JGI24974J35850_10091372	F037001	VTAKQRVVLGALRDAQHAHDGQAVSAGQIAGVCPAPWWGRPDLVTQALVLLERHGLVLVAAGSTRAWKITAAGRLMLA
JGI24974J35850_1009740	JGI24974J35850_10097402	F037001	VTAKQRVVLGALRDAQHEHDGEAVGAYQIAAACPAPWQGRPDLVTQALVLLERDGLVLVAAGSTRAWKITAAGRLMLAPRRGPARERPVIGGGPHPR*
JGI24974J35850_1009968	JGI24974J35850_10099682	F076687	VNRTSIKIIKRKDAEAMANDKTQDLPKLKVAAAMSGKRIERRLHRKMADTVSNWIAERKENNRTKEISAIRKLFGDESLLSRTA*
JGI24974J35850_1010038	JGI24974J35850_10100382	F083539	MRSPYRHLIRRPRPPHVALAAWIVTGPLGHLYAGVVDWVVLIVRYARARARGERL*
JGI24974J35850_1010735	JGI24974J35850_10107351	F009385	MFILKAKTQLKKAIEKAKKIRPRVEFDAFGRYRVSGSKGGFYTVICKKSDNGYKTIECTCKAGDRGLVCFHSVAALSLHIGIARQKQTA*
JGI24974J35850_1011378	JGI24974J35850_10113781	F036799	VASQKRSISFEESVLAEAEQRASAAGGNLSAFVNAAVARELRIARGMEMLADDDEQFGPVPGEVRAQIAEQWPA*
JGI24974J35850_1011996	JGI24974J35850_10119961	F000584	MARKTHHKHSSTKGYRRLLDGLADLEGVHSVATGRVKPRMGSGRPVAPISKVRTTESGLSITINADGAIVDAYVVTDRPAEVAAAIAERGWSASS*
JGI24974J35850_1012297	JGI24974J35850_10122972	F016802	MSWHRWETRARVEDGMTEGLVGGGALQLITVCLCDDGVSEISDPLGRPVAPAPPVLSHLRPSEARALAFELLELAELAERRSEAQE*
JGI24974J35850_1014803	JGI24974J35850_10148033	F073514	MRVARSRSRELVAQGRPAAVVARVAGISRQAIYRRPKRPADGAA
JGI24974J35850_1015752	JGI24974J35850_10157521	F045722	VTPARAPRYRVCVYELRDGKTTQVIDTYGSGFITAVATLDDDIIEVHFASGGPRRLQQDIAAAI
JGI24974J35850_1015990	JGI24974J35850_10159902	F019957	MNALPTVIALSXNQSAWVITLAVGFVVLLVVIALLEGLRRAVVALNDDIWSTWVNGKAVVKNTAMTYLLKNTRQSSDELVDELSNHG*
JGI24974J35850_1017316	JGI24974J35850_10173162	F076730	PADDDFARVDLRLFALTEGGKQIDDPQPASLSVRCARDKLAALELSVLMSMRLSRPPTGVRLDAWQRICAALAERGIDTDPATLHALKFSLTPDSELRAAQQAVWPS*
JGI24974J35850_1020503	JGI24974J35850_10205032	F011711	MRDKRQKNQLVLAFPEEARSEAPNSPSEGIESPIAEHPAESPTTSEKMMEE
JGI24974J35850_1020595	JGI24974J35850_10205952	F076687	VNKKSIKIIKRKDAETMVHDKTQNLSEPKLVVTMSGEKIERHLHRKMADTVSNWISERRENNRVEEISAIRRMLGSESFLNKTV*
JGI24974J35850_1021609	JGI24974J35850_10216092	F038495	VAIDQQRRLQTAAAQAHSAQDQGDFAAANDAWRRYVLIEDALRDPQDLLDEGVELSKVAIDLWLQR*
JGI24974J35850_1021778	JGI24974J35850_10217781	F027713	VSATAWSTYSLAMDRFELSERWCSWKDLDAIFAAARVAIEAGPFDPVICEVVFNEEYDPFTVDTLEEAREHLLRNPRIMSMDIVVSHIDADDACLTLSYSGERLQLNGYGRDWTRARAAYDAAQAELAGRYGITTFKLPQLPKDTVAETR
JGI24974J35850_1022658	JGI24974J35850_10226582	F037001	VTAKQRVVLGALRDAQHEHDGEDVSAYQIGAACPAPWQGRPDLVTQALVLLERDGLVLVAAGSTRAWKITAAGRLMLAPRRGPARERPVI
JGI24974J35850_1023438	JGI24974J35850_10234381	F098376	MAEVRTLTTIILSKTNCQNKKAQLENFSDDFDSLIITLKMLNFL*