3300002395: Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300002395
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0055852 | Ga0003644
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 07SEP2012 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19959777
• Sequencing Scaffolds: 48
• Novel Protein Genes: 52
• Associated Families: 51

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	24
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	14
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F001846	Metagenome / Metatranscriptome	626	Y
F003689	Metagenome / Metatranscriptome	473	Y
F004405	Metagenome / Metatranscriptome	439	Y
F004816	Metagenome / Metatranscriptome	422	Y
F005504	Metagenome / Metatranscriptome	398	Y
F005974	Metagenome / Metatranscriptome	384	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J29621_100042	Not Available	5577
B570J29621_100177	Not Available	3259
B570J29621_100179	All Organisms → Viruses → Predicted Viral	3243
B570J29621_100202	All Organisms → Viruses → Predicted Viral	3097
B570J29621_100212	Not Available	3014
B570J29621_100287	All Organisms → cellular organisms → Bacteria	2568
B570J29621_100467	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2012
B570J29621_100656	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1744
B570J29621_100705	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1675
B570J29621_100736	Not Available	1626

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J29621_100042	B570J29621_1000424	F018929	MTNQEISDLLNQESYRIWDTTKVIKNQDYHDGLVKGLKMAAQYVAKL*
B570J29621_100177	B570J29621_1001777	F004816	MKFIKYKQVARITLYGFDDLYRNNNSSVFTEPLNSEYYITNVVGGVQVGNNAKRMRFQIKGLDNVKLSEHARFCIESINVPILYDNVDDRKSLGQTIVRMSNLSSINCFDTHGNGQTDPVIFTAQTHPSQQRLGTVANNVIFANTESSPVFYNPYPEILYNFPISSNFLNNRYFDFTFIMQFMPGDFIDLVADQEYFDTFHISFIIYDLDEQELLLTSTQDVDFKKIGETLPRKINNIR*
B570J29621_100179	B570J29621_1001797	F021288	MLGYTKEDLDNMVYGINTADFMLNADQNPAIHNYLVMAGDFL
B570J29621_100202	B570J29621_10020213	F009531	YSVSPGGIDCWEATIQGYGESTTASDFKTAGEALNWVLDRYPAEMLELVVTSHQAYEKEYV*
B570J29621_100212	B570J29621_1002126	F000684	QLGDLFTTSKTGITGRIVKFSPINSKLTRVSLQLANGSRRLAMVSTTK*
B570J29621_100287	B570J29621_1002871	F005981	MANVDKAFGLRPLGNLSATGAQKQYGYEIADNQSGAIYQGDLVTIVNGYVVKFLPGTHAAALG
B570J29621_100467	B570J29621_1004672	F044481	MAKEKLSPQDLDARLKFILGITLGSILFLTSVGILYGLLFVSQPIGAQSEXXKMFFNVLGSVATFITGTLAGLLIGQSGAKDVMSAQLANKEMDAKNTQADKKLEAEIDATAARLAAKPDGAMPEEQPVDTDWDK*
B570J29621_100574	B570J29621_1005741	F019324	VLAIDSALTTVNPDDDPWLHRNLTQASDFLSGLWAEGYFD*
B570J29621_100656	B570J29621_1006563	F017131	MAFPGSYNFNYYRGDTAEFVIRPKTANGDAFDLTGFSADFFIATARGEGQTQYEGQAVVDGSADTITCTILPGLGRNLTAGTYVYDVQIDASASE
B570J29621_100705	B570J29621_1007051	F042772	MGRNIVKNLKFKKHTGKFFDPEAFAELLDESYKNTKRADGEMTKKSFSP
B570J29621_100736	B570J29621_1007365	F086621	MATVTKDFRVKAGLVVEGSTATVNGHDILTEALVDTKGDLLVASGPDAVTR
B570J29621_101212	B570J29621_1012126	F018352	MGKFKNTLMDILAHGDCYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHQLFNTK
B570J29621_101216	B570J29621_1012164	F084155	EDNDYSDAMQSMERKYWEGQVDALGYLYGLTYQLSFAIMDKNNKETE*
B570J29621_101409	B570J29621_1014091	F004405	MNSCEVTDFMYPMKADVYFPILTQGEYGQPKKDWVYDRTIICNATPVGGLGTEDIKPEAFLQYENKLIARTQNDPRLSSNNANNATTNILVTNVRDASDNTIYKETAGPRSGRGTIYEIATVEPFTGPFGSIEYYKMLWRRTENQTV
B570J29621_101551	B570J29621_1015511	F003689	MICCEQILLTLYSPEILDIVEIRNFLTDEFRRMDESARDVNKWAGLSDKFKFHSIQVADISSTAPSEEIQGFYAADVVLEIKYSRILDGKGRFA*
B570J29621_101568	B570J29621_1015681	F039115	PTFGIGAAVGSIKDLTDQCKSVVITKSREALDSTSFGNTGRQFVGGLTNVTVTATLLMEYSASPGTYVDLTSLVGTXVYVAVKPTSSGISTTNPEFQITGGYLESLDLVNGSVGELSEVEITITGGVLVEDVTX*
B570J29621_101581	B570J29621_1015811	F038246	ALERAEQADKCYYCSNLAKYTDVAHKDHNNYVVVGVCECHAFKGLSS*
B570J29621_101615	B570J29621_1016152	F011293	VSSNIDPGDAAYRAWQLTKNGERMEQYGHPFTDYTMVRRIFGVLTNFKHNLTVQEAIMFMVAVKLARLMKSLDNEKMHEDSLVDAIGYLNCLHMADARDQLLDAPLHVVGDMEIWRDKPTKGKTLWSRFKSYYKAQQ*
B570J29621_101615	B570J29621_1016153	F023579	LWLALQVAELESACLPNAIGDNGQSFGLMQIHTPSWCQPNKYWPRGYLQTKGMIDDCAELFDPLTNLWVAWHIATNYGWENWSTYNNVVG*
B570J29621_101709	B570J29621_1017091	F000473	NVYDDKHFKYGMNQWTGEPNKPVFYTEEMKRKVWEIRKPLFLLMDIVKYPDFLALRLYEDNFIQFDGEEKEKVIDYVTKVKKLLESYGVRVELEGKPTN*
B570J29621_101788	B570J29621_1017881	F087175	KKSVVVSNPGGSEARGSFERIMDEFILRYFKQSFLRASGIYDYIKKPTIFKKNIKVGSRMGRSKGVDTGFKWIANAKIGVE*
B570J29621_101852	B570J29621_1018521	F100347	MSXSXPIPSIMKWRFKELKKLLKETVSMTPNNGQQTVKPGQRIIVDLPFNSTVDLATFTWFFKGQTNHAGAAADGLAGYVRSRFFPRNSASVIQSMQIKINGGIKVDIPDYNFVYNMLHD
B570J29621_101897	B570J29621_1018972	F023295	MLQSVGCQTKVILVPEGQPVMLAEPVKVRVYAFDPNGKLVPSSNKVVLPAGWYALPRK*
B570J29621_102028	B570J29621_1020282	F085388	MTNCCPNNNCVEIVPSGCVKYTGTPTEGGLIDSFNSCDPYLNDLLKLLDDKVVNLDTRLGLDKTTFDAANNACGTNPVISMTGVTVQDDKYYSAQVVIKLVGVICELRSRLNYLSAKDINVNSGNIHWLDLPLDSSFKVWLADQCLGDNPCSGDEI
B570J29621_102096	B570J29621_1020961	F006885	LLASWSIIKISNKKRMMFLKKHKYKQSYIYEIVKDIVPKQVFDKPKVITQSEKHIQKNMLKVVITEGKAYWILNNVFYTANAISGRVDEETIKTLDIENMPTKELNKMLSILDDLKQGVGPNDSGSAGNKRI*
B570J29621_102171	B570J29621_1021712	F015434	IWRIMESESLDKHTLKGLNLVDETTKSAKCCDNCGCGDSEEQKFNKLMETQSSFEE*
B570J29621_102205	B570J29621_1022051	F079590	KADQDWSSVPAKNEKKIYYLFXFPXKTLIYDSGVWNKVETKSGGYNYVMESIGMSARINTSMSSQLWTSVNESLVGSPTKLEIL*
B570J29621_102298	B570J29621_1022984	F005504	AVTILTKLSNLVPNCLLTLEFEEETGWGGEYEIVRGEVKEILDYETRCYACQSYDCVEYCDNDCGQFCSECNEGSWRDEEAMKECQTHMVLLDTTEKAEV*
B570J29621_102363	B570J29621_1023631	F066526	MELIKNVILRIFATFVVTGLGVIGAGTIAGVSMEKAVFMAGIGGVANVLE
B570J29621_102871	B570J29621_1028711	F007112	AGYNDDPTDVLGFSEDKEKFQEALISVGKWKSEAMNRAIKQFKPDKFISDMVDYASEGGRSEYNGDTMMSAYTMKETATMLMGGWTPDSGLYDLDENIAEVTYLKERLDKPEQAVRQYLVPVDFHF*
B570J29621_103469	B570J29621_1034691	F034155	QKRKVERDQGTNVNWSCKEVKAIVEVDKHGIKRIKEVKE*
B570J29621_103560	B570J29621_1035601	F007521	MAGRGMGCAVRGGGEVGSGPKNKMLSEPSKKTGKVLMMAVGGDVNQHKRMAMGMTGGGMPGGYKK
B570J29621_103614	B570J29621_1036142	F093226	PPPVKTATLDIILFDEESVPTDGMFDQIFENIGGQELISITRSDIVNGQKISYQPIKNLSAIQQRYNPSNILSLQQTADKFFAGFSIKLEDKTPQIGNGPNGENVYLNATGDLIIEFININADEQIETQISVSGTIYEADLGDYTS**
B570J29621_103631	B570J29621_1036311	F028423	IQLISFYKQKLSDVELESLKLQLEINKLNSMVLGLSKESVKKTK*
B570J29621_103899	B570J29621_1038991	F057416	MANYHHKPIKKFNLNGVIHDESALGRLKEEYIRLLESEMRLSGYVPRLDINPDFTIDYNERKKYFEFELTVHGIHTGRKQSEWIAGIDGSTPIYTQKNKSKEFSQEQV*
B570J29621_104063	B570J29621_1040631	F045088	MGYSQFSEEQITTFIETAQEMGISPAIRTLNYPRSYHTAKKWFEQRGVELPNLDSLAKMAVDMRVFYSDKEKVLAAQAVLDRCVETLMEDTLDADQLNKLANAVHKSIQTINLIEGKSTNINENRQKDGQDLAIIDLLNEAKARNEAMXEKGLNV*
B570J29621_104080	B570J29621_1040801	F017959	FRIVRYLMPPEFYSSLANTLGSGGVYKLWFPNYSVYTGNPVPANNKSSVTSFSISTKSLDYVIGTFRLPNYDVEGPVLNTRLSNIDSLEYGATFGTAESQISSGLRRVYNQSXYFAHNGDSIKTTQWRIGNTPYEPQDLKEQFNSLMQHFNIHQDTLSGMYPGINSIGAFREHSYASIVSLNIPGETEMYTVSGLDTEQTPATIEWKVVSEAYTNTDITTA
B570J29621_104172	B570J29621_1041722	F000684	MTLHGYTYQIGDLFTTSKTGVTGRIAGFTPMSNKVTRVSLILANGAQRLAMVK
B570J29621_104305	B570J29621_1043051	F029049	VVVCRVSSLVKVILDRAQEITAHRVGLERGVAFNSDPKDASNYGQTYTNYHELIWQHAEGCGAEMAVANYFGDYGFVPKTDNAHEEADVGANIEVKWTKHANGHLILQNRGEGRPNDVAVLVTGWSPVYVLLGWMPVHMAKQPKYKHP
B570J29621_104485	B570J29621_1044851	F098721	MDLDFATVKLPLDPCNKKKLYHKYIFLLAESFKTLFEEEDQITLATLNLAQAFGGLPVDIPPLTISRQVLKKVCVSVGEIIDRLSTIENGDQDYGGRDPAGRLQDPKLLTADLDFCGSILFDPQRYLGNGPYLAPSPPSFTIEPIASSVTRETFNSLIRVEFNFET
B570J29621_104554	B570J29621_1045541	F011563	MADVNANIDINIDSSNALSQLKALQRQISQFHTSIAKSSEAAALAQKGLQKNLLNSINSIGAFSAEMRTVKTSAEAFTNSLETNKFSMREYFRYAGASTKTFGRLFKSEFDTIGRVAEERVKRLQTQYIK
B570J29621_105006	B570J29621_1050061	F068593	MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALADSAMEKLQSVLNTGVLEISFAQKLYYQIARPFIQCPAGFGIDVQSLASSRTGNAAETQVNGTNWLARP
B570J29621_105643	B570J29621_1056433	F021733	ASGAQFVFPVKPEFPTAGGSGIDAQTVSFTFTVSKGAVTETFS*
B570J29621_105678	B570J29621_1056781	F001846	FMHKNKLHYDVQTRQVKIAGIEGDQIVAIKEQVLPALASTVVTAKYKGKTEPNVHFIASIFAPKNPMLSGMPAVVTVDKNNNCKIVIDNCAPYDVIIDRNDILALMDRETEQLQPLEDSVISAILTDIDKKLPKVPKRKLSKEEIAAKANLNVPNTYKQKYIDILYKHQKAISVNKXDLGLASNFKHRI
B570J29621_105741	B570J29621_1057411	F094975	GNLVFEYGTTDPAISIKEFTLMETLLLNYTACYEALNPYVARRRTVHGIQTLILKPESEILASQGQEAHYHYIKTVAAVSLAALIIQDPFFFIPDGFLGSLGFDVDIFVPYLKMPAWITETVVSFQFQAGHNWLLNLKSYEEIMGRVRAGYFHKPSSRRMNPLELVSTGKRQALSQEENQSKRPKGTE
B570J29621_106203	B570J29621_1062033	F089985	NMRQFELYDNISEFIFNFEENKRKKKEGKTKGLEKFMEEELPE*
B570J29621_106247	B570J29621_1062471	F022813	DTGFPPTFLNRYVLSELAFYELVAESDLLSPGVNPMVPAQIPTNIEDLYNDSIQIRQTESPVLIVYDRLMRFRPTPFYAHKREQLIYFIYSTDVGKLIDSVRVISNALDREDASAQDINSYSLSNPILNSAGEVSIPYNIYFHNTRVYQADESRDVAELASARTLFVNKLIIEYDYHIKT
B570J29621_106424	B570J29621_1064241	F000808	MEYNYSLTTSYDGELIHTLRVSDMLEAVNAWTKCVDFGDAKEYATYNLSDPTGKMY
B570J29621_106570	B570J29621_1065701	F013756	RYNTRMTNELVSSKYTFACDPDECDCLIELTSSDGFGFPSGVMEITCPCGRKPTLLSVEHATIQPTETEGNKMEESTVTISPIPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVLQGKIDAVKEIICEAYADSQDQDTLRDIAEALGIELIKEVQFTASVE
B570J29621_106793	B570J29621_1067932	F005974	RLDQXDFTPQTQTVRYALDDFLRGNPLERAQVYEVLNRIGVLSVDEIRRAEDLVL*
B570J29621_107165	B570J29621_1071651	F000264	ITMTFLRKGLTINTVGAKLYTSEVYMRKRYLVDKRTPEEIAKECGASVETIYVYLAKFKLRKSKR*
B570J29621_107484	B570J29621_1074841	F086583	KRVIIKKSSLPAVDNNKVGYVFRYRVVSEDKNRTSQWSPINLVLDNSITSVAGTVQASSSVISAVWGDELNRPKYDVFVGFDGATATYHGTTPIHSYQFIKTGTTNVRVIIQVESSEKILNANLQIYNSGLVSLV*