3300002226: Marine microbial communities from the Baltic Sea - M1t6 FKB2 (106N)

Overview

Basic Information

• IMG/M Taxon OID: 3300002226
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110183 | Gp0084983 | Ga0022215
• Sample Name: Marine microbial communities from the Baltic Sea - M1t6 FKB2 (106N)
• Sequencing Status: Permanent Draft
• Sequencing Center: Karolinska Institutet
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 203164960
• Sequencing Scaffolds: 30
• Novel Protein Genes: 32
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → Viruses → Predicted Viral	4
Not Available	7
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86E	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 58.133
  • Long. (^o): 10.0
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F002077	Metagenome / Metatranscriptome	596	N
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006870	Metagenome / Metatranscriptome	363	Y
F009146	Metagenome / Metatranscriptome	322	Y
F013716	Metagenome	269	Y
F016595	Metagenome	246	Y
F018082	Metagenome / Metatranscriptome	237	N
F018290	Metagenome / Metatranscriptome	236	N

Associated Scaffolds

Scaffold	Taxonomy	Length
M1t6FKB2_1114433	All Organisms → cellular organisms → Bacteria	974
M1t6FKB2_1119530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2413
M1t6FKB2_1120122	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	697
M1t6FKB2_1204921	All Organisms → cellular organisms → Bacteria	16092
M1t6FKB2_1211828	All Organisms → Viruses → Predicted Viral	2372
M1t6FKB2_1288987	Not Available	812
M1t6FKB2_1326417	All Organisms → Viruses → Predicted Viral	4356
M1t6FKB2_1333867	Not Available	23235
M1t6FKB2_1350478	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	512
M1t6FKB2_1383380	All Organisms → cellular organisms → Bacteria	2931

Sequences

Scaffold ID	Protein ID	Family	Sequence
M1t6FKB2_1114433	M1t6FKB2_11144332	F002077	VTNLLPQTNNSREISPQQENFLTNLFENGGNVTDAALTAGYSKGSVTWLRTSLADEIINRTKNILSMNAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPKKEVV
M1t6FKB2_1119530	M1t6FKB2_11195301	F018290	QFTFTRLTPFLIQAELQGLAKISLHRHLGTMAYTTLNSDGSSQSNTVFQCDSVPRLL*
M1t6FKB2_1120122	M1t6FKB2_11201221	F099294	LLISSCDSYESSQKSMLDFIDPSWALIYSVDDVSQVEKDLQDNVLLGKISTTKLQQVLKKHPFIGKLPYSSEILIALPKAQDTANNVLVIAKSHKTTPQDSLQNTSPPKKGIVIKKYSGETIYQAQVGDYILLSGTKKYLEKALKQEKNQDLALVKLMGSNTFKGISVYTKYNTFLDSEATLSAWNGLDLTLVSKGVQGSGIAMIQDSLQLLSVFKGQQSHGFSMASMIPNT
M1t6FKB2_1204921	M1t6FKB2_12049212	F018082	MKKVLVVGFKVHTSIGKLVKGDTAELPNAEVQTLVRVRPDALKVLGNVEPSPAPAPIKRAKSK*
M1t6FKB2_1211828	M1t6FKB2_12118283	F039086	MEQFIINFWEIISGLLLVVFMAITWKAEIGARISVLEDKVRTLFELINNRKD*
M1t6FKB2_1288987	M1t6FKB2_12889871	F046974	MAGKPLRKKILIDVAQRGGAEYLFEELASGKTMTKLAENYGCSREYFSKTIHGVPEYAAVIGKAKTAAADALVEEGLGMVDALDGGSSTQEIAATREKVRSEEHT
M1t6FKB2_1326417	M1t6FKB2_13264174	F049098	MSRPNKISEQTKSYNLTVSIKDYSELEKFATRESDRYAIQVSVADLIRNAIKLYLEDLRIADDGRTEDGNN*
M1t6FKB2_1326417	M1t6FKB2_13264177	F036425	MAFDQINVKDCLCDMYDIKRKVKQTKVVHDVKGHTLEIPLFNAPKDNDGTIFTLGDCIDNVIEQLEQELKLRGQEI*
M1t6FKB2_1333867	M1t6FKB2_133386730	F076524	MSEENSKVYHLTADYKKSTYQTEQWNNVLSNGKHVRFEVTNYFYWGTFEIELTDKEKEEILKKKSILLNDYAGVSVESLDDGCDCCDEICNKESFTPEELKEIHRLLYLDPDDEESYTSDCDDTNTDILEQNGWSMDDTIYGIDTGCELECISGEE*
M1t6FKB2_1350478	M1t6FKB2_13504781	F072007	WMKKLLAMLALAILITGCYAKESNKDYDKTEEPKARRY*
M1t6FKB2_1383380	M1t6FKB2_13833802	F055007	MSNCAHCNKRFTCGCQKASLGNGVIVCKQCKTKAEADVSTSSNLNRELARQQIQDLRNK*
M1t6FKB2_1434484	M1t6FKB2_14344842	F025596	MSKYTNTLANLSYLFGMAILILGLVDRKMRLMDVSDAQWIILSLVLGIFFPILLNALFFK
M1t6FKB2_1438816	M1t6FKB2_14388161	F062770	KQDKHRVKHSTLADYCDMIVEGVSTEDEHFKENVV*
M1t6FKB2_1442270	M1t6FKB2_14422706	F074917	MRFAKTKRQKPASSLTTKAKDKLDTIRQNPINQQKKQCGDRCHYKYSQCSSAGFTPRRPGNPVDFLTDLSNKLCGRHSSHRYLPIQVLIYQDMAISTLRFRGFSIRLTASI
M1t6FKB2_1456894	M1t6FKB2_14568941	F104568	MKKIIIHFLFVASCLSWVLVFILSFIFFSPNQTLQLFNNFLPSSYDLQYSEVMNKGSFLNPILEFSNISIQINDVQVYSANKSHYGFLVSPALIIGKVTMSHIHLEEANILLADYSAQKMPKLKINLDKNISISFHETSLAHLGSEMLINGQLDSLIPGLANGHINISHHGKISNLSIDSDGEDSNFLVNLNTLDWLKFFPNDYLSSSKTMQFGITAIGSLTPKGSSIKGSLNLEESSFSSLTIKKNYGSFFFQSQDGLSILSLKNFLHPFVDEQFPIK
M1t6FKB2_1482125	M1t6FKB2_14821254	F019634	MPTKLTALINRASVSNTTYFAAQRGIFFDDMADLIKRVEAEGFSTQQNDGERVMVGFKVWMTRHGVITPARTTNL*
M1t6FKB2_1483784	M1t6FKB2_148378431	F009146	MAHKALFERVKNKLNETVNAAFIRSTKTEKGNTQISERVVIEKIREVLSSLELTFEEAGSQQSKDFRNVGGIGLNIEIKKTDNPVIYFNDTCPSKDIYYVVFFTGKEYKRTPEKNIQPTLLYINGEEFIKDSPWIAEYIAELTALKDKYARGENKKRLAGIMEVYPRPTFKANIGGFLGMNMRDISSLNNNIIN
M1t6FKB2_1532237	M1t6FKB2_15322371	F013716	SNASRRFYLCYLLLPYLQQTEEEKMNKYELKYMYEQEATKVENLIDINGKNAHHIQDLYSELKKKDANIDKLIARLNDKREEVFKLQNIIKSQQEKNLREYHFPESVDN*
M1t6FKB2_1536867	M1t6FKB2_15368671	F050420	MAFLKQCLIVISVLLPLSISASEDFKYNYEHDSLGDRDDAGGDVTFRAHKDNATTFEYAHVNINWKGGFFKSSITDDFIQKKEIKNGLVLYDIVEGNQKKGYSVFA
M1t6FKB2_1567418	M1t6FKB2_15674181	F002047	LILFGMKQKISLPEVVSKDRETLVRKGFLELKEGKYTMTPQALAICGTLDSYFIKAKKKTDIQLMGKDFVEKINNYREVFPAKKLPSGKPARNNVKALGEAFRWFFETYDHTWEEVHKATRMYVNEYRDADYMYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEDEHFKENVV*
M1t6FKB2_1610108	M1t6FKB2_16101082	F034571	MSREHFHESQIEDKVEKYMQEGMSDEDAIQKAESEYHGQVNLVEDQALKINKRQVAFQKALRQGCYPSEIVLAMVVDHLQASYNSDSESTVVKEFCRELLTKINDDTLEVANAE*
M1t6FKB2_1619167	M1t6FKB2_16191673	F037717	MARNVTAVKTRTNDSAKVDMYTVPAKNTAEIHMIYILATAGNEDADLYWYDSHTTTEYPLAHAKSLQATNGEYLLLNNLQIDLKENDILRVQNSGTSSTITYMVSMNLAPSITTQFHN*
M1t6FKB2_1642420	M1t6FKB2_16424201	F004866	MAIVNKVDLKHQVDINVSIKYQIVTYCFFNDTLISNSDLKFLTELAKEKGIELTKFCNKTVNEDIFKSAQSARNAITKAEKKGLLVKTGHNKKTIKLNPDINVQSNGLVLLDYKILGRESEKS*
M1t6FKB2_1642420	M1t6FKB2_16424203	F005243	VFINFKKHMMTDFKTNENLQDKDPKMSKEEMAARRDEITTFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMFMAQQYAAQKGEGTPDPESPEGKAFQDAMAKAMTNETA*
M1t6FKB2_1642489	M1t6FKB2_16424895	F016595	MAYFFKCEICDHQETFSDTFEIPTKALEGSLADYESVICSSCISNKTRLKGNHIIINRRTS*
M1t6FKB2_1647723	M1t6FKB2_16477232	F046643	MSNLIWSYGDTKLDRQGRTIYFIEYANQTDSKGNQIELWEPEDIFLARSPNYLKSVKHFLSILYYCCVCLFVAYIVLSVSMHFFDSISDDGLIETLKQMLEGCGTGCRVMR*
M1t6FKB2_1657487	M1t6FKB2_16574872	F035479	MSIKRYIAVVLWAVIGLAINTQFDPNTVIGSVMGSAFIFIWIGVLVIGIFAWIN
M1t6FKB2_1689726	M1t6FKB2_16897262	F006870	PLFAFLYLINHMKKISLVFLLAISLVVTSKASSLETKLSPQGSDKYNFLITGDDKSSEKKLRDVFQNKVNEVCGTRFEIISIATYQINKEGVKNNVLDGTFKCFVNSQM*
M1t6FKB2_1741041	M1t6FKB2_174104117	F034209	MDDEIKKLTQHDMSDDCPVCRTQDVVAMALMPAAAAWEMANELPRFSLALQGAAGLLGAMLEEGVDRTEIDTALSDLLDDIEAAIAEDRVMGGPPQGSA*
M1t6FKB2_1763402	M1t6FKB2_17634021	F106084	MNLALRDHKIFQLRAELENRKRILCTKRRQLAKNTKENQFLKGVADDYDTYNTYIISQKERQISFFKTLNMYIESVTNELQLTDSKLKESKREQREITKELLFLKNELDDLVESNESDINSNISINSNEQTE*
M1t6FKB2_1822694	M1t6FKB2_18226942	F077326	MKTLVKPTLLLLFFVALCALPSQVTAQLSANTATSFSITIEIDGNNTTLACNGGCDWKKITVQDNNTLVGENGVANNKKAANGSAFLFEVQKNTSGITLQQIQGTQWAAPIDISC
M1t6FKB2_1848805	M1t6FKB2_18488054	F058434	MSKFFKFIKDIVLPEVVNKERRTKILSEGIIETWQSEEQERKAKEAKEIAKEAYKKVRSSKEGY*