NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002224

3300002224: Marine microbial communities from the Baltic Sea - M1t6 BS2 (105N)



Overview

Basic Information
IMG/M Taxon OID3300002224 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0110183 | Gp0084988 | Ga0022193
Sample NameMarine microbial communities from the Baltic Sea - M1t6 BS2 (105N)
Sequencing StatusPermanent Draft
Sequencing CenterKarolinska Institutet
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117009831
Sequencing Scaffolds9
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster2
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Colwellia → unclassified Colwellia → Colwellia sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBaltic Sea
CoordinatesLat. (o)58.133Long. (o)10.0Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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