3300002160: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by proteinase K digestion

Overview

Basic Information

• IMG/M Taxon OID: 3300002160
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099546 | Gp0055085 | Ga0005352
• Sample Name: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by proteinase K digestion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 229758624
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
All Organisms → cellular organisms → Bacteria	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Gulf of Piran, Adriatic Sea
• Coordinates
  • Lat. (^o): 45.5099
  • Long. (^o): 13.56
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005915	Metagenome / Metatranscriptome	386	Y
F030935	Metagenome	184	Y
F033719	Metagenome	176	Y
F105953	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24797J26694_1027958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1339
JGI24797J26694_1042556	All Organisms → cellular organisms → Bacteria	913
JGI24797J26694_1050495	All Organisms → cellular organisms → Bacteria	782
JGI24797J26694_1081370	All Organisms → cellular organisms → Bacteria	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24797J26694_1027958	JGI24797J26694_10279581	F005915	AMVLCGEDDKVERQGSTPVDTARRLGQATPGAELALIPGVRHMTFWDGTGAIEALEDFLARHPIG*
JGI24797J26694_1042556	JGI24797J26694_10425562	F030935	GTARMLGQAIPGAELALIPGVRHMTFWDGTGALTALQDFLKRHPIQ*
JGI24797J26694_1050495	JGI24797J26694_10504951	F033719	MDHRTSADILANGIPGARLVLLAGERHSYFFANPEASFKAIREFL*
JGI24797J26694_1058768	JGI24797J26694_10587682	F105953	REPLHVAKGYPAKDERTTAAECLLLKPSEVLEQVEEGLSGGQHFELIENEDLMVEMTVRSDSQRIYHRGFNQDEVAFQLTGQRGTRTTQGEFMLDTGDMLWIPPGCSHRNIGDMLTTRIILYTRNPLTLSREYTSRAEQVGQAG*
JGI24797J26694_1081370	JGI24797J26694_10813701	F033719	SDMNHRTSSEILENGIPGAELVVLPGERHSYFFANPEAAHAAVRDFLARI*