3300002159: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by freeze-thaw cycling

Overview

Basic Information

• IMG/M Taxon OID: 3300002159
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099546 | Gp0055084 | Ga0005351
• Sample Name: Host-associated microbial community of the marine sponge Aplysina aerophoba from Gulf of Piran - sponge pinacoderm, lysed by freeze-thaw cycling
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 245555515
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Community Of The Marine Sponge Aplysina Aerophoba From Gulf Of Piran, Adriatic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Gulf of Piran, Adriatic Sea
• Coordinates
  • Lat. (^o): 45.5099
  • Long. (^o): 13.56
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004237	Metagenome / Metatranscriptome	447	Y
F005988	Metagenome / Metatranscriptome	384	N
F017881	Metagenome / Metatranscriptome	238	Y
F050452	Metagenome / Metatranscriptome	145	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24796J26693_1045544	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	963
JGI24796J26693_1047290	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	936
JGI24796J26693_1060173	Not Available	781
JGI24796J26693_1101397	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24796J26693_1045544	JGI24796J26693_10455441	F004237	MDGVKNMIEASDIRPGDQVLLLADRRSDSASMEAISAGLKFMGAEPMSLITEPISRYGRVPQAVLDAMHACDVVIWVWPVFITFTPGHRALGRKREESGTQLKEQRMKPYFIYFEGTPGLLARDYARFPNPVLWKLAEKVREVVAAGKVVRIEDDLGSHLTATYDGTRLYGMQFRAGDPPGRCHFPWGRCGVFNGGGKADGEVYLSCVQGVAGELPAPMKWVVKDSEVVEAEGGELAEECRQLFKNVPGSNRLVEIMFGYHPKASIQHGIADPMHWELISKMPWVGLGTDRKNPDFRHVDGSVMNARLYIDERLIVHEQGM
JGI24796J26693_1047290	JGI24796J26693_10472901	F050452	RHVDGSVMNARLYIDERLIVHEQGMLDRSLLHHPEVLEAASAYGDPYQVLAPVSHNAHGSGTLW*
JGI24796J26693_1060173	JGI24796J26693_10601731	F005988	LVGVSTLKPKQQESGIRKLRAFDHFTMVLGKAGGEAGLLALMESQSMRVRTYNMQDEQFAFHRALQSEEVRIQFRGDALDLSEFENVAVSPGEITIIPLGISHSVISVPPDSEDFLRLNFYSKLRWHVPIDPTRHVYNSTFTVETTVHKEADWWKTAANA*
JGI24796J26693_1101397	JGI24796J26693_11013971	F017881	MALFFHSQDVDELVPFPEAVSITENALRRIGTPEGVNAPRKRLNLHRTVAEAPFDTVLNIYAGGSSSYGAVGAQVALHRKAIVGDQQRRPPYNPDQTELALVYDADTGTLLGIMAHRPKHAAGVADLRTPATSLA