3300002133: Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - S2T7BSa (116f)

Overview

Basic Information

• IMG/M Taxon OID: 3300002133
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110182 | Gp0072426 | Ga0016768
• Sample Name: Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - S2T7BSa (116f)
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 168471753
• Sequencing Scaffolds: 39
• Novel Protein Genes: 41
• Associated Families: 39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	1
Not Available	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium SCGC AAA023-D18	1
All Organisms → Viruses → Predicted Viral	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	1
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Bellamyvirus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCGC AAA164-I21	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 57.305
  • Long. (^o): 20.0745
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F001968	Metagenome / Metatranscriptome	610	Y
F002092	Metagenome / Metatranscriptome	594	Y
F002303	Metagenome / Metatranscriptome	573	Y
F007054	Metagenome / Metatranscriptome	359	Y
F007973	Metagenome / Metatranscriptome	341	Y
F009073	Metagenome / Metatranscriptome	323	Y
F009839	Metagenome / Metatranscriptome	312	N
F011355	Metagenome / Metatranscriptome	292	N
F012107	Metagenome / Metatranscriptome	283	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
S2T7BSa_1002674	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	664
S2T7BSa_1018061	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	6037
S2T7BSa_1037546	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	547
S2T7BSa_1043056	Not Available	1164
S2T7BSa_1055043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium SCGC AAA023-D18	12141
S2T7BSa_1077923	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	640
S2T7BSa_1094531	Not Available	709
S2T7BSa_1142951	All Organisms → Viruses → Predicted Viral	1054
S2T7BSa_1149624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	42951
S2T7BSa_1167588	All Organisms → Viruses → Predicted Viral	2199

Sequences

Scaffold ID	Protein ID	Family	Sequence
S2T7BSa_1002674	S2T7BSa_10026742	F002303	MENRVITDPNTGEQKIIEVMDIREQCRERAIEFAKDWGFENVSFHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLAMSRADTDCRNNIFLLTMCCNNCYL*
S2T7BSa_1018061	S2T7BSa_10180614	F031070	MRIHKTPFRTRRAPYWNFWRVVLAGWIIRYPKIVWVPIGFLIVLIYNAVVN*
S2T7BSa_1037546	S2T7BSa_10375463	F028525	MTKTLKEMRLDLQEQEASTSDLQYIRAKTNYNDHFEARRYIADKILRDKKLADTY
S2T7BSa_1042844	S2T7BSa_10428441	F041158	GSHYIFSPLVSSSFLGTYNFQGVGPTASAQYSVLRFDEGRDYFVPQPEFSLTETVPFENVSDVTIVHNLGVMYPVVQIYSTGSFGEEFQIIPASVIAVDENTVRITFSGLTSGQAVIGSGGSVLSGTIEGDRVFGPVLSASFADRARLADEVTGFDSASLSALSASL
S2T7BSa_1043056	S2T7BSa_10430566	F048940	TRVPLFILIKMTVAQRMEKQFFLSFIDLINEVQGIQKLPSQLNFNRKSSWMKQVSNPRQKKDALARI*
S2T7BSa_1055043	S2T7BSa_105504310	F044824	MKYRFAKSIGNYGISDESAAYLIENNQSFAVGLSREGNKKIAWVGFDQYGIRFECIAIVFIDALYIIHLKPIEAKEDIDEVKKRLW*
S2T7BSa_1077923	S2T7BSa_10779231	F002092	MEILLYIYTVINEITTMKTMNQKSLDYLKGNPKVAEFLTKVNEERKEYYKNIMSSKSNTDLVMEVGNKFLRFWDGTACWGFISRVDGDLKGAPIKKGDLLKCASWKAPAKHAR
S2T7BSa_1094531	S2T7BSa_10945312	F049641	LSKDDLEPPYRPADAGPKDKFIYESPDGGNTVYARPFGIHDRALRKKVYENPEMLEEKAFFERWHMYRDILEVSKDNEVIAKLLEQVELLYRLNK*
S2T7BSa_1142951	S2T7BSa_11429512	F015080	MFNLLNFQPHLNGIPNAIAARHKFENDWDISVVSGPAGCGLYGNLNDGTYEVAIIRPNGNMTDDVNGWNTKQEVSAMMWVLAQL*
S2T7BSa_1149624	S2T7BSa_11496247	F016995	MLQKNINIESSAREKRIIKRLNLKNLPFETSLEEFCSKYIEMISDLKESFILGSDKPGMQWCLSTIKKFKVFLLIFEANALGIEVYKESISSKLPEYSYKTIAQIIDEGLEKGFFIKMSARIQKKHDLKIRNIRPSEDLTVEFINSNIEIISSLMKFLRKHK*
S2T7BSa_1167588	S2T7BSa_11675883	F009839	MTVKFGCFHTVYENKRATEFVLEEFRKYHPDAPYTICCDGGVDYSDLCEKYKVNYVHSYMRIGRRNSGHPSGVYGFTKDESLHWIHMFREAARHVRENGGTHMIMMEDDVLTQGEVNINPIWECAGFEVPGNTIAPALLDFIRDKYGANPNVNWYGAGGGSIYNIETFLDNYHKIYDFIDFDFENILSNMDYRFGWLDLYMQIAYFVIGKHYSINTNLTEVWKTPNFRESDFTLVHAYKELY*
S2T7BSa_1190242	S2T7BSa_11902423	F075980	MNEFRYIFEDRFAECATDAKADREELNNFFNNSVKEKIGDHASVGVDSSKQHIYNVCYDCNILLWNEIYQRMVNIADQCNVKLNWDEIKHCLRFTFIWMPPGGDLVPHTANKFRALSAFNIPLRGKTEISFYEHLPQHKVGKKLETHEYFHPCFLNVNRFHGVVNDTDQERMIFKTHLMIVPWEKLIESYTGNNKVNMFNFVVPWQKVEIKPNTKKAD*
S2T7BSa_1273039	S2T7BSa_12730393	F023097	MKSYCVKDHLTGHVFKVLFTEQDFQEFLKSHPDIDECIDCIECDDAPSICIE*
S2T7BSa_1296680	S2T7BSa_12966801	F072108	EHKITSKGMMIGLVSPNYSNIGNLDISTKALVGFGKSETERKLLDSTSSTGERVLEGDYYSLFGNLGASVSNKNNFGKFSSLNLVLGADINSEMRESFNETLYNEYDELILVQLQPRLEADLTLGFSERSNVFLKTGIEAREIISGKTQDYSMGGTKVSYTTATPSDVYASVSVGANLNIYNDIDFFAVASARSSEEKTESYQASFGIKGKF*
S2T7BSa_1328526	S2T7BSa_13285262	F023138	MATKEPYTEAQVRFILDNYINNEDRSVRETGHSLGSIKLMLQNIAATYGLVNFGTGNPMYTRIADEYRENNPVFGETMSKRSFCMRFGVIKD*
S2T7BSa_1348593	S2T7BSa_13485931	F020114	MKPQTFKHISRCIDKHGVHHLDALDDYGRHWYATMQQKEEPWLIYIQKWELRTH*
S2T7BSa_1367828	S2T7BSa_13678281	F068814	RCSPLMGPSVLMNIPLVSEDLFGTSLKLKPHETLMVKSVVAFMMEKYGFKAKIIVKKKERAGLIGDISLSSTSVDGNKFYLNFNPNQSYGRIIQTMLHELTHVKQVSKGELLPNKDYTAILWKGKEYIAAKDYNKLLKSNPSEYMKLPWEVEAVSNMKSLYPQFIKSKHWLGLKGKDTTLDYIINNI*
S2T7BSa_1393045	S2T7BSa_13930455	F020114	MTMKPQTFKHISRCIDKHGVHHLDALDDYGRHWYATMQQKEEPWLTYVQHWELRTH*
S2T7BSa_1398517	S2T7BSa_13985172	F024724	MENLIRVKYYFKEHPNTTLSVFLKTQEQVESYKAKHPNYVYVEESN*
S2T7BSa_1417017	S2T7BSa_14170172	F007973	MIQIDGEVHQLLKQFCKEKGYKISGLVETLIKDKVESVKRPLPKNTLSTKI*
S2T7BSa_1421055	S2T7BSa_142105510	F029603	VVYTSTLGLISGEKSLKTFLPVDRGGKYAFIQIKASGYPQNLPKGPKCPKRYPQFSKSVGQQIPLPPALVAPNRSYAITSRPDQSQQLKLRAVFKGVREEDEAYFPAE*
S2T7BSa_1421055	S2T7BSa_142105512	F023494	MKGNAALNRAFISFPQLNRLVTTTNFIDKKSHLREQILIRSFKSNQLSKVKTKELG*
S2T7BSa_1466864	S2T7BSa_14668642	F085375	MVDFIKPNWDIEEFKTLNYILSTHKDGKLVDQYLTSGHSKEKLSIYKYQLPNKMPKCVDEYIIPHFTFLDKVTPAVNYFKPGQYLPLHIDLYGKYIEINDITFENVIRCMVMLEDNSPGQILQITNKCIGSWKSGDCFYWNYDEIHAFYNFSMKDRYAIQLTGVLK*
S2T7BSa_1474245	S2T7BSa_14742452	F001968	MEDDLFSEIQDSPGEIFDIPELRDLDEDKFDVNEYLNSNYDY*
S2T7BSa_1487051	S2T7BSa_14870514	F066743	IEQQLENLMSLDEDLEYEYECELYYDCNDDEEPEPIIEKFTPELLTELENLVYGLDND*
S2T7BSa_1498466	S2T7BSa_14984663	F001881	MTERSQNFMSKIWELRNAGADTEEKLVAAILKVVAENTKSYTAQDNLIVLDKNDILELAEELEQ*
S2T7BSa_1505324	S2T7BSa_15053246	F012107	MTRYDVRCGQAPWENTTTDLDSAIDLAYHLSEDYQCDVNIHYNHTGTIYTTVSNY*
S2T7BSa_1511137	S2T7BSa_15111371	F093414	IMAKLLVAFLMSLVLFGCNNNPSSDASASDTEPTEEVPAEDAPMDEAPAENADSE*
S2T7BSa_1517995	S2T7BSa_15179951	F055670	MKKFKVQILGETYEVSEKSFRNKPNGDGTLSTYCYISHAEAGSLVRQFAKKFFPQYVVRVSSSSFAGGNSLDVYVSTKNGGPVPQAAYEKISQFARLWVYGKFDGMTDCYDHYEESGITSDKGTELQAGVKYVMVYNRPRFGTVEAILNEVLNEGREFAEVVRFYTD
S2T7BSa_1518457	S2T7BSa_15184573	F091973	MRSLIDPVWFLLLFLTFAIFVKVANTKLNRVIKLLTRVSISILVFLSTGVATLIFDQILATETSPKSDWSPEFIFVLGGGYELGANAAQDFLGTESIRRVNAASALWQKYPKSLVVFSG
S2T7BSa_1531678	S2T7BSa_15316783	F036986	MATSTKNAFEIRSDLLGLAKQLADFNFQAQVKEFEYSIKKDGDQVVQEFKAPTLSPDDIINTAKKFNDFVTNGDVVKTMQDNFEKGLEMSKPYADAYQNTVKAFFPNLKNGK*
S2T7BSa_1578786	S2T7BSa_15787861	F075742	MKLKLGNSVYKKDLSNSVYQQSGANFGLTVNKGMLINNRPDGQTGIQQAATAKKVVKKMEKVQMMAEAVFLGNIRSEMMKGPEMG*
S2T7BSa_1583907	S2T7BSa_15839071	F036668	MTLYAFTDKKVLTVREQLQEDLITLLDSQFGEVDYLDDVKDLACQIV
S2T7BSa_1599282	S2T7BSa_15992821	F015024	MMEYKEYYELFKQYPEWEIEHHNHKEGFNGEGNPELEQALVEMVEKDDTLFLYKEKAFHFSMLLLNKQYADLDFWVCTTHALHDVSEHKQGLLDDGDYRLYFADAQGPIDDEEPQGYLCDLPLNVKDGHFNIDEFEQILEEILSFEGALEDTYYIEELI
S2T7BSa_1614064	S2T7BSa_16140641	F009073	MKNYQIILTSVLSFTVAYWIMNGTAQKYVHFAGELNELGCTVIALTMGILSLIAVDYKKLINGLN*
S2T7BSa_1624311	S2T7BSa_16243113	F088307	MTDAPWLDCMDGFKYSQEDDAAILDKAALKVSQILRISVGEIDKTKFVYLYTLLYNMMGQGADGKPCEDGDENMRHWLNTHNTHLGFFPAAELVNRMPEIISYLESFL*
S2T7BSa_1628846	S2T7BSa_16288462	F023138	MATKEPYTEAQVRFILDNYINNEDRSVRETGHSLGSIKLMLQNIAATYGLVNFGTGNPMYTRIADEYRENNPVFGETMSKR
S2T7BSa_1645449	S2T7BSa_16454492	F011355	MKSLVVIVILLANPDNLEKNYYPVDTEDSCDVVGQRIIEQIAKYKDNIGEHQGWYTLDNKLVVGHYCTVK*
S2T7BSa_1648391	S2T7BSa_16483911	F049578	MRTLKYSHLGEKVIIRVAQKTTNILPQLQDLMQQLEENGKDSREVISSVLSNIEETLCTDN*
S2T7BSa_1676513	S2T7BSa_16765133	F074884	ISDKIYPNELVRDLMDINDIIQNKRSELEQLKTREEVVNATSKIVRSYYDKRKNE*
S2T7BSa_1687184	S2T7BSa_16871841	F007054	MKRIEEFQKAIEGVKFTPPQKKIVNLILKGYTIEVVNKHHMSGGELMWKNPNSDYLEHAGKVYKAFFNVFYQIKKQSGVVLPTTGYIN*