3300002104: Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2

Overview

Basic Information

• IMG/M Taxon OID: 3300002104
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0056896 | Ga0005054
• Sample Name: Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 604335938
• Sequencing Scaffolds: 32
• Novel Protein Genes: 35
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	8
All Organisms → cellular organisms → Bacteria	8
Not Available	7
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Serpentinimonas → Serpentinimonas barnesii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001115	Metagenome / Metatranscriptome	774	Y
F007269	Metagenome / Metatranscriptome	354	Y
F007341	Metagenome / Metatranscriptome	353	Y
F018055	Metagenome / Metatranscriptome	237	Y
F018649	Metagenome / Metatranscriptome	234	Y
F023933	Metagenome / Metatranscriptome	208	Y
F030514	Metagenome	185	Y
F034495	Metagenome	174	Y
F036533	Metagenome / Metatranscriptome	169	Y
F039292	Metagenome / Metatranscriptome	164	Y
F040284	Metagenome	162	Y
F043032	Metagenome	157	Y
F044381	Metagenome / Metatranscriptome	154	Y
F045635	Metagenome / Metatranscriptome	152	Y
F048881	Metagenome / Metatranscriptome	147	Y
F049729	Metagenome / Metatranscriptome	146	Y
F050649	Metagenome / Metatranscriptome	145	Y
F054696	Metagenome	139	Y
F064237	Metagenome / Metatranscriptome	129	Y
F068109	Metagenome / Metatranscriptome	125	Y
F075129	Metagenome / Metatranscriptome	119	Y
F079374	Metagenome	116	Y
F081001	Metagenome	114	Y
F084764	Metagenome	112	Y
F086760	Metagenome	110	Y
F087944	Metagenome / Metatranscriptome	110	Y
F090572	Metagenome / Metatranscriptome	108	Y
F097998	Metagenome / Metatranscriptome	104	Y
F104090	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J26621_10002599	All Organisms → cellular organisms → Bacteria → Proteobacteria	9812
C687J26621_10017774	All Organisms → cellular organisms → Bacteria → Proteobacteria	3075
C687J26621_10020228	All Organisms → cellular organisms → Bacteria → Proteobacteria	2813
C687J26621_10025541	All Organisms → cellular organisms → Bacteria → Proteobacteria	2408
C687J26621_10025762	All Organisms → cellular organisms → Bacteria	2393
C687J26621_10030244	All Organisms → cellular organisms → Bacteria → Proteobacteria	2146
C687J26621_10032453	Not Available	2046
C687J26621_10033236	All Organisms → cellular organisms → Bacteria → Acidobacteria	2013
C687J26621_10035054	Not Available	1943
C687J26621_10035213	All Organisms → cellular organisms → Bacteria	1937
C687J26621_10067896	All Organisms → cellular organisms → Bacteria → Proteobacteria	1217
C687J26621_10068325	All Organisms → cellular organisms → Bacteria	1212
C687J26621_10072862	Not Available	1159
C687J26621_10079491	All Organisms → cellular organisms → Bacteria	1091
C687J26621_10099669	Not Available	935
C687J26621_10114293	All Organisms → cellular organisms → Bacteria → Proteobacteria	852
C687J26621_10134004	All Organisms → cellular organisms → Bacteria	767
C687J26621_10152081	Not Available	707
C687J26621_10157075	All Organisms → cellular organisms → Bacteria	693
C687J26621_10172519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Serpentinimonas → Serpentinimonas barnesii	652
C687J26621_10179554	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	636
C687J26621_10179833	Not Available	635
C687J26621_10192892	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	608
C687J26621_10194039	All Organisms → cellular organisms → Bacteria	604
C687J26621_10198146	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	597
C687J26621_10199855	All Organisms → cellular organisms → Bacteria	594
C687J26621_10202116	All Organisms → cellular organisms → Bacteria → Proteobacteria	590
C687J26621_10215405	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	567
C687J26621_10222280	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	556
C687J26621_10239172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	531
C687J26621_10245045	Not Available	523
C687J26621_10257244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J26621_10002599	C687J26621_100025999	F018649	DELHRAHGNRKRATPSNFAPEDFDWLRRVRAATDAKRDPPPVPAAIARKLCGFGFVTLSGRHGLQISDRGRDALLEQDMRDAEER*
C687J26621_10017774	C687J26621_100177744	F068109	MIEALQQIGFRDVRACHYFNSFSGTTKEGVARKYGVQGANFVAYKAA*
C687J26621_10020228	C687J26621_100202283	F068109	MIEALQKSGFRNARACHFFDSFLGTTKEAVARKYGVRGANFVAYK*
C687J26621_10025541	C687J26621_100255412	F018649	LKRKGATHPNLTPGDFDWLRKTRAATDAKRDPQPVPMEIAVKLRAFGLVTPNGRSGLAITGRGREALLEQDMRDAEDR*
C687J26621_10025762	C687J26621_100257623	F007269	MKNIFFAALFLQLLVFALMAPGLRADEKREFISKRMNSDVQKLWKNSGREIIGEEPFSSRNNNIMDYMIGFYNTDHGLLVTLQALKQRLDEYEHAIPDVYSSELVAVVFVDKLLXWYKSETAKSTLKVEMARLIGKQSI*
C687J26621_10030244	C687J26621_100302445	F104090	MSTNLRVRPTLLRELGKIAAKSDQDVADLAEDALRQFVRSHRETAHLTSTKANVRRLRSAHAEIETEIARRRRKAA*
C687J26621_10032453	C687J26621_100324532	F050649	MGRWIAIGRAPGWDDLKRFGXELKXTNQWRVDPRTTITSVYALGDGRMVAECHGPSQAEFDEWLRKKGWTVESVTPVRFVAKAGDIWNVG*
C687J26621_10033236	C687J26621_100332362	F075129	MAKAKRSHEYDAFTELVDRVLAVPNSVIKGRVEKHRKRAALNPNRPGPKKSGKPLKL*
C687J26621_10035054	C687J26621_100350541	F068109	QVAEMIEALQKSGFRNARACHFFDSFLGTTKEGVARKYGVRGANFVAHK*
C687J26621_10035213	C687J26621_100352132	F050649	MGRWIAIGRAPGWDDLKRFGAELKNTNQWRVDPRTTITSVYALGDGRMVAECHGPSQAEFDEWLRKKGWTVESVTPIRFVAKAGDIWNVG*
C687J26621_10050743	C687J26621_100507434	F079374	MPRRASAKDKEHGLPSLALVFGYIAVKDLQRLEDRIAVLNRLGYGNAEMALICDTTPGSISTLKSRGAARRRTRR*
C687J26621_10067896	C687J26621_100678964	F064237	MKVSEPVIIVRRVVAAKRRAAGRRIAANIRRLQKTRTTRTAAQALAEARGERLAR*
C687J26621_10068325	C687J26621_100683254	F007341	PSAFRHGYAEQDFYELLAGHYLKIRSQRGLEDVYELLGRNLGGDYLHIVYRVLPDRRLRVFHISRMSEKQXRRYQRYQR*
C687J26621_10072862	C687J26621_100728622	F090572	MKRHTVIMPFNLPRLTDKAAAQFIELLQQLFADIEHHYAEQAHRYRKHQQEIQYHRQAPSSRPTDPPF*
C687J26621_10079491	C687J26621_100794911	F064237	MKLTEPVIVARKVLPAKRRASGRRIAANIRRLQRIRGTRTAGQALAEARGERLAR*
C687J26621_10086570	C687J26621_100865701	F048881	QLPEEVAAETKGEKHGNKDAKGNRVGSKVPVSNVPLPAHVPDAPTETQQMPLEYRGIIR*
C687J26621_10099669	C687J26621_100996693	F034495	MRHLEKLFDLSLRYVFEPGLNWVIDHPVVAVVAVVGLVYWSVRGYRMI*
C687J26621_10114293	C687J26621_101142932	F068109	MIEALQQIGFQDVRACHFFNSFSGTTKEGVARKYGVQGANFVAYKAA*
C687J26621_10134004	C687J26621_101340043	F049729	MRTNGESKFSFLLIGLGLGAIGGPMSAPLRRKETRELLRGRSNKGLDYLNQQTGKLRESPEVTVKKGKEFIGPHCDSVKTDTEAQKQAYQEEMREHLGG*
C687J26621_10152081	C687J26621_101520811	F081001	AYEISSEKVKHRAERRAQNETFAPMPSFLQGHTSINKVSSGFLVA*
C687J26621_10154873	C687J26621_101548732	F030514	VKRVVRALIRSLDFMHAQPADVKSLIQKRLGASETPIVDHIYALVTKYAARNGIPSQKAIENTLLGTPFKGKLTNFDKLTDFSMAREVAEGK*
C687J26621_10157075	C687J26621_101570751	F039292	MKDAVQRINVEYGLNLTEEEIEIITKQVEAGKRLFQKLYEVDVEGVVPALKIDPAERP*
C687J26621_10172519	C687J26621_101725191	F087944	RRTRAMAVAAAIPWAVILKALPTVVVTAKELWNHWSSRPKTAPVDPNADVKTQLASVAERLVALESAETDQAKLISQIAEQLQGIARRASVAYWLGFSGLLLSCVALLLAAFR*
C687J26621_10179554	C687J26621_101795542	F040284	LALFFHSDDVDHLIPFKEAVAIAENALKDMVSSAGVNAPRKRLNLHRKVGEGQFDTVLNVYAGGSANYGAVGAQVALHRKAISGMTQRR
C687J26621_10179833	C687J26621_101798331	F018055	MGQYNNHPIYGIGVRGLGKKWSCKGLIFDPDDKVTEIKSLEPTELTFATKKKAEDHALKLCKIWIDEQSGGIVSSGLTPSAPLKADASAI*
C687J26621_10192892	C687J26621_101928922	F043032	MKIFFFDIETVPTEQSLQDNGLLESQIKLDEAELLKKLSLSAATARILCLA
C687J26621_10194039	C687J26621_101940391	F054696	PAWKHERRQLRVMTSMHLDILPGRQGWKVGRSRWTIENGTFNRLTRDYALEHNYRHSVPAIVGLLAMRSFACLLTQAYWRAAIARSKNAPNRFVKWFQDIIVEDWVRYLDQALTEPGCRSG*
C687J26621_10198146	C687J26621_101981462	F084764	MANLLYKDRFIVNFARFDETTAFWIPMVDVNWGTNGLRESHTITGPLVQFKNWQDAERFMTEMAKAWIDDNP*
C687J26621_10199855	C687J26621_101998552	F023933	MSKQVSFSSTEGLLSIRVPKKLAGKKVVLVEAEEYARMKQRLAEIEDTLEKIARGEAAYRQGRTKTVRSLSELGR*
C687J26621_10202116	C687J26621_102021161	F045635	TRQFLQETSLFEKSVSARDLENLEEALAAIIRNPNLPGRLPSFYDPSSPSHLYRSGNLLIHYRVTESDVVEFLNLFWPRV*
C687J26621_10215405	C687J26621_102154051	F097998	VALFFHSDDVDHLISLKEAVAIAESALKDIPLRAGVNAPRKRLNLHRNGGEYP
C687J26621_10222280	C687J26621_102222802	F001115	MKNELHNLTEDISRLYEDITQKTESLGQIDSITRLYDELQAQLXSISAEEIDLLQSQIRSTLEQMVGISKSLAVIKTLKVTFSDHNDMNEFAKKLQEPTSTRRSMEDR*
C687J26621_10239172	C687J26621_102391721	F086760	QRASVGKEEMEQALADLQAQGVVMIRDNFCADPHLAGVDLRVVALVESIDGADPQLSAIRLIDDAWNKWLGEYLSNHRCG*
C687J26621_10245045	C687J26621_102450451	F036533	ATDMLSWTRSAARLSEARRPRGPRRFARVGLVAAWAIFWLNTALFPCSEVAAAVLGGHTGNGPQSASAAPPLHYSDVTYSEPLGSSPDSPCGTTLISGPPLVGEYEVLTLDRSPLKWFAVDAPVATILAAANRSANLALAQSALPPSLRLYLRTQRLLI*
C687J26621_10257244	C687J26621_102572442	F044381	MALLKKNTSQLQTQESDIHKALRAWYLTPGIQRDLRNRENEAVQTVLEVLERRRVAAHKTARPDTPSATTKPK*