Sample 3300002079

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300002079

3300002079: CSTRmetagenomics

Overview

Basic Information
IMG/M Taxon OID	3300002079 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095583 \| Gp0060320 \| Ga0016756
Sample Name	CSTRmetagenomics
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	89693915
Sequencing Scaffolds	15
Novel Protein Genes	17
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	8
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division TA06 → candidate division TA06 bacterium 34_109	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wastewater Treatment Plant Microbial Communities From Luxembourg
Type	Engineered
Taxonomy	Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater Treatment Plant → Wastewater Treatment Plant Microbial Communities From Luxembourg

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Belvaux, Luxembourg
Coordinates	Lat. (^o)	49.507864	Long. (^o)	5.943557	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011593	Metagenome / Metatranscriptome	289	Y
F021489	Metagenome / Metatranscriptome	218	N
F023356	Metagenome / Metatranscriptome	210	Y
F029455	Metagenome / Metatranscriptome	188	Y
F030486	Metagenome / Metatranscriptome	185	Y
F045118	Metagenome / Metatranscriptome	153	N
F047964	Metagenome / Metatranscriptome	149	N
F048287	Metagenome / Metatranscriptome	148	N
F049316	Metagenome / Metatranscriptome	147	N
F064732	Metagenome / Metatranscriptome	128	Y

Showing 1 to 10 of 14 entries

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
CSTR_1009099	Not Available	1357	Open in IMG/M
CSTR_1009267	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
CSTR_1019028	All Organisms → Viruses → Predicted Viral	1156	Open in IMG/M
CSTR_1019064	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6454	Open in IMG/M
CSTR_1022109	All Organisms → cellular organisms → Bacteria	2470	Open in IMG/M
CSTR_1022359	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
CSTR_1022360	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
CSTR_1022430	All Organisms → cellular organisms → Bacteria	2967	Open in IMG/M
CSTR_1022636	All Organisms → cellular organisms → Bacteria	8854	Open in IMG/M
CSTR_1024451	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M

Showing 1 to 10 of 15 entries

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Sequences

Scaffold ID	Protein ID	Family	Sequence
CSTR_1008147	CSTR_10081472	F078878	LSSIVLKIPYESQSFHAALTDATLRDRVQEWVAAAVTLDDAVYIPLRTDWMPNGPRRTADGVEVLLAGRWPPEVDAETGPRVSAAIFGRVWDTLCNATPADELEDIATCGLSGVNEEQTGNEVLEEAPAVIHIHATPVNHVDGW
CSTR_1009099	CSTR_10090992	F064732	MPKVSEYKWKDTEAEAEAATAAARERCTMPLVQSAERHVRFPSSPMAPGQYIAATATRSTGQLDHPEDTELGNHPFLGLL*
CSTR_1009267	CSTR_10092672	F011593	MTSSLAAPPWCRGCPDPIYDNRRGEWDWYCRQHSPTGIRCSNVAVLRERCYRVREYFAKKEASK*
CSTR_1019028	CSTR_10190282	F066555	MKGKLRKEFIERMEAVLYGDIVEEEVEDLIHDFCDEIENRLLDVCAELKRIKGLREIDAIRNAVEELVTDLW*
CSTR_1019064	CSTR_10190648	F030486	RYVALAQSRGGACFCTRGAVQDYAVITLFSRWQKP*
CSTR_1022109	CSTR_10221092	F023356	MSENSLKKAVLESRVSAAEAEVMSTELEKSKVITLRVEEPLFKAIEAQAELWNVKPAETIRRVLRFYFLPVALELELRGESEKFWKGEFTPEAVGEYMVFLLETTEKIRSSALFLSREAVKLSEATEGKLSEALEEEREGAET*
CSTR_1022109	CSTR_10221093	F048287	MYNKAVLLQTLQQVRLKVIDTLKLMLSDYEVSPESSLRVQPASYEVATGEKVEYPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGTRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVEGELVQNGVFTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARRAQQRGYGTTFLVSNSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRSLYGFTSVSELFHGGYEVVKEKQVESWKNSLFSFSAEEVVVLGSKQLEQEMKVFQERFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTR_1022359	CSTR_10223593	F045118	AELSRVDTFKNIEPEEPFSSYFSLFSLLRARRAQQRGYGTTFLLSNSSQEFCIYDKLQEMREHGEETSELPETMRFEHRALKKEKVSSLYGFTKVKELFHGGYEVVKEKQVESWKNSLFSFSAEEVLVLGSKQLEQEMKVFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELREKVCGTAERN*
CSTR_1022360	CSTR_10223601	F045118	AGTRAALKKVEGELDQSGVFTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAQQRGYGTTFLVSNSSQEFCIYDKLQEMREHDLETSNLPETMRFEHRALKKEKVRSLYGFTRVSELFHGGYEVVKEKQVESWKNSLFSFSTEEVVVLGSKQLEQEMKVFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTR_1022430	CSTR_10224307	F048287	KVEFPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGNRGTGAFLQFSVPKNYYGSNYFSVGEAGTRASLKKVEGELAENGVLTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAQQRGYGTTFLVSNSSQEFCIYDKLQEMREHGEETSELPETMRFEHRALTKRKVSSLYGFTRAGELFHGGYEVVREKQLESWKSSLFSFSAEEVVVLGSKQLEQEMRFFQEKFGANWFQYFLKSYGAYSLAKFAGKEVVRNALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTR_1022636	CSTR_10226361	F029455	ARGSMADRVIDLDLWGEGAERLPAITITGQGLRIEGSQAEFDRLILIIGGWMK*
CSTR_1024451	CSTR_10244512	F073245	MIAEPITLLDLALGLTLLIALVAIVVNVIALVKEYIKSQNVRA*
CSTR_1025975	CSTR_10259753	F045118	FSLFSLLKARRAQQRGYGTTFLVANSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRTLYGFTRVNELFHGGYEVVKEKQVESWKNSLFSFSAEEVVVLGSKQLEQEMKAFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRSALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
CSTR_1026402	CSTR_10264021	F021489	MTIEKKIESVQEYNLLKLLKANSSLKRFGVEWIKLDHTLCRAFATNEFAMIVADLEPNQWHDIFDGLPEVIFIDKLKRDEVHYFEAKELVYYNYLSVFEAVGKEPNYQPVMHFDLELLRNLTDKFDNIYFVKQSGKALFMKLEGDKYPAGSYYGALMPKTISQEETAKIIEALSSLATDGEIRRQWVADLREFAQE*
CSTR_1028711	CSTR_10287116	F104682	MREIGIDRPRFDVKVSTEIFTLYFIPNLARKKYIDFWHRVEQMIEALKIADAKERKQAVDSLSTDDESDLLKEIIEVTLEANGIAYNETWWEEHTDAEMQLEFVRSVIEGSDNGKKKVLQVLKA*
CSTR_1028770	CSTR_10287702	F047964	MVSKKEMLVILNKVAAVFGKEIDEKLVSVYHLALKQYSRMALADAAMLCVQENSFMPRPKDLVEKIDKYDLERKWQVVEPSTERTYWVLFREEYETTDDINEIECKEIFADEYVGAPKLKKTSETNNMSDEERLIQFRKLY
CSTR_1030708	CSTR_10307081	F049316	MDKDKRITTIVLDKEADRKSKIIAEFTGKSLSAIYREALDMYFSHFVNNDLLSEVNEYLDKLYWQYKIDNPHIFAAVQFGNLSNAAVMIAEAIKQLPQEPEAQKLIDEGMRLISVLSK*

Showing 1 to 17 of 17 entries

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