3300001845: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - lt1kb

Overview

Basic Information

• IMG/M Taxon OID: 3300001845
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0094242 | Gp0055825 | Ga0016845
• Sample Name: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - lt1kb
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 117675588
• Sequencing Scaffolds: 47
• Novel Protein Genes: 54
• Associated Families: 53

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	37
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Mid Cayman Rise, Cayman Islands, UK
• Coordinates
  • Lat. (^o): 18.35
  • Long. (^o): -81.85
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000057	Metagenome / Metatranscriptome	3033	Y
F002030	Metagenome	601	Y
F002745	Metagenome	533	Y
F002753	Metagenome / Metatranscriptome	532	Y
F003285	Metagenome / Metatranscriptome	496	Y
F003827	Metagenome / Metatranscriptome	466	Y
F004643	Metagenome / Metatranscriptome	429	Y
F005464	Metagenome / Metatranscriptome	400	Y
F006364	Metagenome / Metatranscriptome	375	Y
F007053	Metagenome / Metatranscriptome	359	Y
F010479	Metagenome / Metatranscriptome	303	Y
F010724	Metagenome / Metatranscriptome	300	Y
F012464	Metagenome / Metatranscriptome	280	Y
F012682	Metagenome / Metatranscriptome	278	Y
F016015	Metagenome / Metatranscriptome	250	Y
F016731	Metagenome / Metatranscriptome	245	Y
F017842	Metagenome / Metatranscriptome	238	Y
F019844	Metagenome	227	N
F022431	Metagenome / Metatranscriptome	214	Y
F022979	Metagenome / Metatranscriptome	212	Y
F024883	Metagenome	204	Y
F026291	Metagenome / Metatranscriptome	198	Y
F026395	Metagenome / Metatranscriptome	198	Y
F026397	Metagenome	198	N
F026902	Metagenome	196	Y
F028864	Metagenome	190	N
F029898	Metagenome	187	N
F032311	Metagenome / Metatranscriptome	180	Y
F034189	Metagenome / Metatranscriptome	175	Y
F040147	Metagenome	162	Y
F043455	Metagenome	156	Y
F045995	Metagenome	152	N
F054932	Metagenome / Metatranscriptome	139	N
F058220	Metagenome / Metatranscriptome	135	N
F060977	Metagenome / Metatranscriptome	132	Y
F061043	Metagenome	132	Y
F062842	Metagenome / Metatranscriptome	130	Y
F064788	Metagenome	128	Y
F067843	Metagenome / Metatranscriptome	125	Y
F068113	Metagenome	125	Y
F071316	Metagenome	122	Y
F071630	Metagenome	122	Y
F078840	Metagenome	116	N
F080151	Metagenome	115	Y
F084723	Metagenome	112	N
F087323	Metagenome / Metatranscriptome	110	Y
F093463	Metagenome	106	Y
F096028	Metagenome	105	Y
F097497	Metagenome / Metatranscriptome	104	Y
F097519	Metagenome / Metatranscriptome	104	Y
F098016	Metagenome / Metatranscriptome	104	N
F099436	Metagenome	103	N
F105373	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
shallow_1000611	All Organisms → cellular organisms → Bacteria	994
shallow_1001278	Not Available	988
shallow_1004153	Not Available	965
shallow_1005941	Not Available	951
shallow_1006749	All Organisms → cellular organisms → Bacteria → Proteobacteria	944
shallow_1009093	Not Available	926
shallow_1010273	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	918
shallow_1012955	Not Available	899
shallow_1014964	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	885
shallow_1015505	Not Available	882
shallow_1017844	Not Available	867
shallow_1019812	Not Available	855
shallow_1019839	Not Available	989
shallow_1023249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	835
shallow_1031142	Not Available	792
shallow_1031449	Not Available	790
shallow_1036984	Not Available	763
shallow_1038446	Not Available	757
shallow_1041786	Not Available	741
shallow_1042881	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	736
shallow_1046169	Not Available	722
shallow_1047389	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	717
shallow_1047408	Not Available	717
shallow_1049926	Not Available	707
shallow_1052223	Not Available	699
shallow_1056923	Not Available	680
shallow_1077199	Not Available	612
shallow_1077322	Not Available	611
shallow_1077391	Not Available	611
shallow_1077999	Not Available	609
shallow_1078804	Not Available	607
shallow_1079659	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	604
shallow_1088183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	578
shallow_1094770	Not Available	559
shallow_1094861	Not Available	559
shallow_1094945	Not Available	559
shallow_1096587	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae	554
shallow_1101694	Not Available	540
shallow_1101846	Not Available	540
shallow_1102428	Not Available	538
shallow_1105063	Not Available	532
shallow_1105149	Not Available	531
shallow_1107518	Not Available	525
shallow_1107877	Not Available	524
shallow_1113695	Not Available	510
shallow_1116294	Not Available	503
shallow_1150507	Not Available	694

Sequences

Scaffold ID	Protein ID	Family	Sequence
shallow_1000611	shallow_10006112	F003285	QESIHQLQTEIQTLKIKDEFRTKELDALMKKLSETSSKLNALSENIGRLLAGQESHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRISSDISLLYKKVDSLERWRWITIGIATAIAWLLTNIIPKFLSN*
shallow_1001278	shallow_10012783	F016015	MINVNKFENRIVKFKRIDSEGNISDKEAEVRRMDYDQAEDIPRSVTARLVDPLNFVITLGYDKSKKKFSGPLGTDIWESNFDIDDFITSSKMGSADRYMRSPKRNRA
shallow_1004153	shallow_10041533	F006364	MEREIDNDTRKMRILNYLDYMDDKSLQEISVALYNLSIRRREVKKQKELMNESGK*
shallow_1005941	shallow_10059413	F026902	MDKYRIEYAEKGIPGILCKYVIGTEELLSVLLKLKYFDKLKSFDN
shallow_1006749	shallow_10067492	F067843	MKTFYIYSESELELGSEQVDVQHFPHQHLITNPNAIKGSPKLLRQPQHALHAATVQVLPIKAKLNKYEPKTKQTKSQAPAK*
shallow_1009093	shallow_10090932	F029898	VLDIVGQMGYTIDSVMRKIIEMIKKITKKNPVRTQELTYQREYDGAVKNYFVNIFEDWADYYVAYTYDKHGANCGVKRFNKGNIQKMKPSKRNFALVTA*
shallow_1010273	shallow_10102732	F026395	MTINEFRNKHCGRGGSTPPPPFTTYGGEPESTSV*
shallow_1012955	shallow_10129551	F080151	MSESYYMKDEDGLFRMFDVSHDGLEDAIEAANEAGVDVLRDRDGETETVWSFEDAGSDEPWDGFNSDAEADADALASA
shallow_1014964	shallow_10149641	F043455	MRKETVEEYLRRGKTITKIPQVLDTIGSIWNQQGIGADKDRHDHKKFGIRLQDWKSMQPDIRFDTDDGDRKYWNLLNKRCDKLLKKVEKKQKKT*
shallow_1015505	shallow_10155051	F002745	FASFSTSNLVFDNNGQGSASSGLKIPISGPMMKRIWPDTIRTTVFHTTDLAGLEKLKKLEGGKKSISAFFSMMSRYMETGVATSGDIHVVAEMDADVLVSARDDIWSIVDKTGRRWVEMSWFANAQWGGTGPKFDKVEKDLNTLIKNLVNKHLPKDVTKGEHEYELWSNMKSHLKAGREGGGSRLRLVIKDYFDGVEKVLKKNKEVMGNIIYGYTKSKRMTDNAWDEQIVNNIKIKTVHVWKTNRDDVWGPDEIKQHITDVKKWPIKVWDASIELEIYTRAVVAKEIGRKIR*
shallow_1017844	shallow_10178442	F060977	MKKFLMALLLMVPVSAYALSVDVVHDVNVAVGNAIITVDQDENEITVGTGGLTFSNSDTVDFGVAYSTSLLGGLEGGLSYDYTNESDHVIGVDTTFSYWGANLDTEFAWNTNSGDVTAEVGTGYALFGLDGSVTSNWDVDDASYEGMDVTAGYTWNVTDTFSVRPNMTVPFDDDFTRGDLTAGVS
shallow_1019439	shallow_10194392	F054932	GATLAQVLQVIQYIELTGMVKWVMVGHDALTAAEAEVPEAQRVDATRDAWNGQEQRFQDIQQYLQRDGHGEISAQWQKLAEVAPAILDGYITMRENFVKPDPLGAVPKKLMELAIIAADIIQSHPWGAVRHTHRYISDGGTVPELVEAVALAMIEDGVQCYKACGLDVIEAAESA*
shallow_1019812	shallow_10198121	F005464	AGWTLSLLCMLIGSYFVWPHIHVALLGIVFFYIGVRVFNFSTFKEYKEDRVKLLLKLSKW
shallow_1019839	shallow_10198393	F078840	FTVKVSPNPLIVKLDNIPTLIFLLDLVTSIVCESEIYSDNFLSKSKSLFGKVLVSTINIV
shallow_1023249	shallow_10232491	F071316	MKIFRRNFIKTFFLSLPVLLLMKFDLLSSRSKKTKLKKNKNFIWYLRHDD*
shallow_1031142	shallow_10311422	F019844	VLHILKDLINRLFGFKDKKINKPKLTLVVNKTDNQEGKSENAYFSYYEEHFTFEEDISEEYRSELKNHLKESLEQKVHPWDFEKNLDFKLKEPDQIYYLFMYCLMYIDIYEQDLFNKFTKLWYENNLDDTTKSDEEINNEALRLFKYEVLGFNLINGSKEEPIKELKEVVSDSFDEAMFNTKSDNLPLLLKAWKTYQEKVLLEDKKKLKVH*
shallow_1031449	shallow_10314491	F012682	VLIDNEKKYVAKFFSDADESDVKKIDLSTLAWAKHTLTLSGAASPNFKIGEVITVGGSETFIVAGFTAGASTVEVVGWDNTNKKATSIDTGMSNGDAIVGGVSGTNTRTVANSGAFTGLEWNVLVTKIMWATIGCQVGIEWDGSTAEKYIGEFGGNGSWSLPGMELPGIPINATGDSSEVLGDIQFTTADQSGTDSYTIIMELKKQAPGYDVPAYEENASLGYRVDYVLGNFT*
shallow_1036984	shallow_10369842	F022431	MYNIDMIAQYLAKKFLPAGTPVFHRMSDPELLSLIGWAQKWPIEKVYDTAFEQVFPEKQLKEAKPEFDEWFMKADNPKLPIIVREELIRAFRIHMSTGRMDVLRLGATIATYAKRIMWAGLILALLILYVF*
shallow_1038446	shallow_10384461	F034189	MTTNLATLASNNGQIIKSGLSDGRRAKFLPSVVGVVYDWLRYECHLGNVGLEVPLSLAP
shallow_1041786	shallow_10417862	F026397	MKKTYKLLFLTSLFFIIGCGDITFYRKPIISVTVSPDCHDLYKDDNLYIYISRLGTDWDSDMYVDVGSTEDLAVFVEGKYNITATAARKTLTGSNYESIKSIYIYHGEERNVEFHCD*
shallow_1042881	shallow_10428813	F084723	VSRSGALDRIDVLLSTITDPAFTAVIRAEPLALSGTPVLAYWIQARTNGWQTLGDIGSTTTI
shallow_1046169	shallow_10461693	F012464	LLTEPEVAVIITVPLATEVTSPPPDVTVAMNEFDVAHVTVAPEITDPAASFTVAVSVAVSANEANDRLVGDRVTRDVT*
shallow_1047389	shallow_10473892	F087323	MQSIGGNLLQDLGNYANHNGKRERGISTTFLRAGSEDGTQPLFPISSKRLSIHADVPKEKMGWLCLSLQHGQWQNILWIKK*
shallow_1047408	shallow_10474081	F002030	IAILVFGLIVLSAICLWLLIEGRKSPKFLIWFIPLLLILVSSTYETYTSILGYPRTSTPQKGLYLKHFIDEPNWIYLWVLGDGNVPMSYQIIYSRETHNSLEGVSGKSEEGKFMVIGVDKSEADGNEEGEEGEDSGGGYTIGGDMSFYEWDFTTNMPSKNARQQ*
shallow_1049926	shallow_10499261	F105373	MALSIPRIFEEVAAANSFGARKKVLLENESNPLKDLLKYAFHPDIKFALPAGAPPYKTVGSPDEYNPTYLYPNIRKFYLYVEGGHDGL
shallow_1052223	shallow_10522231	F017842	VEHDLLCSIADMEKKKEEGWRMVFSPPKNNLIGHTGDIISHTSEDWNSVLKNIKSHHPGSTIQTKY*
shallow_1054087	shallow_10540871	F062842	MNNILLIIALLLSGCAADATAKDSTATTPAEEHQNRTADASSDDETWIAVVLTWNPVVRVIDKEFTSEVECWNFYENGTGESRFGEQHRDHQDNLPTKD
shallow_1056923	shallow_10569234	F026291	MLDHFSHSELACPTTDQVRLASGFGEALEKLQIKLDAPIYLTSACRSPLHTAKING
shallow_1069998	shallow_10699982	F093463	MALEQRSGAVHWIDHVVVGTNDMSAWVQWAVNAIGVIPGPVRGLTTAARQRN
shallow_1077199	shallow_10771991	F022979	MAKTDTFFLRTSFNTSGTNYVSDNIDISAYTDPARGRVLVVDKAFISFSTDGGGPILGPDIDAVIGGRSLGAQACSEKQTALVSMSDNSLFMRSNLYASNTVNDAGGVGTIGLMEETSALNPAEYTGGFIIPTDAIHCGVDASIAWTAELKVGFMFEVHTEKLSLQRIQELLVSLTAN*
shallow_1077322	shallow_10773223	F040147	GWFMAFSVATSLFYRKGVKAGIKHAMMTLNLEQHQIEKLNKELKNDDVAMKTILN*
shallow_1077391	shallow_10773911	F007053	MANSIRNSHQRSVIHCDTTDGAITLAELKATGEATPTKAHIVDIYWQTATSLTIDRGGTAVHAFTGTGHWNLSQSGCELGGTQTADIGLTVSGATYAIIVVHKSYETV*
shallow_1077999	shallow_10779992	F010724	MADRTTENTNTLEAFRLNFNGLVTDIGDFANLNGSFTATNVVGAINELFVGFKLVSQISGDAEYFLQPTSAETLTLKGGAGIHSGAETTNIVTDITADDEMSFFLNDNIAGLASLQVNTITPTAGGSTDPIVFGTLVNGSGTNYNVKFASPGDTNIDY
shallow_1078804	shallow_10788042	F099436	VIKSIKEEIKELPKEIQEAHAKDKKHATIGTTAIATSALGSAALEWVNESLLPTEWFAGAGVVGFVAWGITRVLMLEAESGLEHLLE*
shallow_1079659	shallow_10796591	F024883	KEVLETVEAFKDNPEYAPDPDHIQIYITTKDGGIVELHIGYDGEKILKTFDSFDSEEELEEQRIIERMEDPEGGILLN*
shallow_1088183	shallow_10881831	F097497	MPRKPRKPTTPKQRDPSWKLRHALGHTVEDNPKAYTRKRKHPKEIDL*
shallow_1089952	shallow_10899521	F061043	QVTDNSRTIKLYFVTDNQFTNLLSKVRKIYPTKQNIPNTRTADNDKPYTLADMARDIFYDFFIGKKKPLKQPATRKPFLVEPTRYKSEIVIPNWNPFKAISFLASKAVAANQEAKGANFVFYQTLQGFRFVSIETLMLGGFRLFKEKDSGVVAEEYPHLAINAILETATTDNTSHIPIYKDDPEIEEDMKP
shallow_1094770	shallow_10947701	F028864	AANEILLETDTLDSGETDNFVTEPTLTSIEVELETGTSTGGLLLETGDDVRMEDVTFLGERTFTAGDNLVLDGTDLSSTNAGSNLIMEFADGRHKLADEDFVTGDEIHLVLETASDLSTIGHYHPPVGTHHTDGDGHTAAEHREIALWDYKLQLLMTQERA*
shallow_1094861	shallow_10948611	F010479	MKSFKGYLTEFTIQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATEGGGIVAEMDADVLVSARDDIMSEVDKQGRRWVMMSW
shallow_1094861	shallow_10948612	F032311	KKRKLAKFPVNATDDYKMKKGKPAFKFPSPNSDMMIHVFLRPMKGKKGMMAFNYQLEDK*
shallow_1094945	shallow_10949452	F016731	MGLAISLILNSCAKNVADKNNDLGSGDKSNLPISLTSLIEHAEYCKAIYDSGGDQKDEVAFEVKQESGISIIVIRVTA
shallow_1096587	shallow_10965872	F096028	HITISVDFRVDWASFELIDGDFHSHSFGGRVKRNDLMLEDN*
shallow_1098449	shallow_10984491	F000057	MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEIIELESHQGSLEEAFELTKDEIKILKKLLKELYVLAEPTRIKGYTDEQMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMS
shallow_1101694	shallow_11016942	F004643	MNDYDKDFWKENGWVSCFECDVIFTDLEKLFEHQQIHLDEDVRVYR
shallow_1101846	shallow_11018461	F045995	IPIPKELYYIHFSRFNLNKKMIHGREYKQWYYVNFDGKMIEQNPDNYFEKSRLKGMSSRMKKQFMRKYGALNDSDWIAINWGTRSNSNSVSSDEFREKLVYNFRTNYGSARLIVLEIENMIYRGEFPKVKMMWEHNNVDVHICFMEDDEYVPDPTPVFTVGFAETEKSTAEYYKW*
shallow_1102428	shallow_11024282	F058220	MQIFVDCDDTLILYDSHTGIHPYGVRHGEPWHPNHPLVDALIETEHSVFVWSGGGAWYAEIIAGKLSLDFPCLDKDETTFELIQEGDVVIDDQDLGGRRTHNPFEWPETKA
shallow_1105063	shallow_11050631	F003827	MPEGRWADWQVRLIAENLAEKCPKRAWFEGDDNDEDYFTSLKSWSHITARQLYSMELEERQLIIFVHHLGIEHVGVETFDPQ
shallow_1105149	shallow_11051491	F071630	KGKVKKTVKKYLAHVI*KKDKSELKYLAIVSIKGNMAHANKL*
shallow_1106694	shallow_11066942	F097519	ESYFPNQTKQDENVEQESDVSSDGEEVSEPKLNNIMEAYSKAIARK*
shallow_1107518	shallow_11075182	F068113	MREEIEKVLEAMREDYKRWSNWSSNYKPNPHSDTKIMNEMIENYCNGLEVTEGSRYWKIISTSGSGTQRSV
shallow_1107877	shallow_11078771	F098016	LSQRPLSPSGLPDEASADELLAQVSDDLPEPRLVVPLDDEEPDLPVLEGNAPVSLDELSQYPADLDPQAAPSIELLLTRPHPAAADSAVAQPVLPGNQPAPLFPGWMSVADLYEPEDQLFLPESPIGVPTELAEPDAVAF
shallow_1113695	shallow_11136951	F058220	MQIFVDCDDTLVLYDSHTGVHPYGVLNGEPWRPNQPLVDALLEAEQPVFVWSGGGAWYAGIIAGKLGLDFPCLDKDETTFEVIQEGDVVIDDQDLGGRRTHNPFEWPETKA
shallow_1116294	shallow_11162942	F064788	MEYTEKQVNFLKAAIAKHGEGSILTKSDLAEVAEDIGMKFPFWMTDARRSGSYTKIGKDMYRLPAINGGEGASVADIVVDEASEVVIESKNKESETFDMSTYFNPAELIPAKDPLFVAHGHFSDLI
shallow_1150507	shallow_11505071	F002753	IESVKLTDSDRLTSAAFDIESVKLTDSDRLTSAAFEIESVKLTDSDRFTGAVFDIESVKLTDSDRFTSAAFDIESVNDTDSDRFAGAVFETESVKLTDSDRFAGAVFETESVKLTDSDRFTGAVFETESVKLTDSDRFTQRYRF*