3300001724: Marine viral communities from the Deep Pacific Ocean - MSP-146

Overview

Basic Information

• IMG/M Taxon OID: 3300001724
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0056717 | Ga0006054
• Sample Name: Marine viral communities from the Deep Pacific Ocean - MSP-146
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64170145
• Sequencing Scaffolds: 33
• Novel Protein Genes: 36
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	1
Not Available	13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. K31	1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	1
All Organisms → Viruses → environmental samples → uncultured virus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): 37.133
  • Long. (^o): -17.5322
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000226	Metagenome	1525	Y
F000930	Metagenome / Metatranscriptome	830	Y
F005894	Metagenome / Metatranscriptome	387	Y
F010945	Metagenome / Metatranscriptome	297	Y
F011408	Metagenome / Metatranscriptome	291	Y
F011673	Metagenome	288	Y
F013236	Metagenome / Metatranscriptome	273	Y
F013312	Metagenome	272	Y
F014327	Metagenome / Metatranscriptome	264	Y
F019813	Metagenome	227	Y
F021867	Metagenome	217	N
F023881	Metagenome	208	N
F031529	Metagenome	182	Y
F032241	Metagenome	180	N
F037418	Metagenome	168	Y
F037815	Metagenome	167	Y
F040337	Metagenome	162	Y
F043883	Metagenome / Metatranscriptome	155	Y
F048920	Metagenome	147	N
F051987	Metagenome / Metatranscriptome	143	Y
F053221	Metagenome	141	Y
F054156	Metagenome / Metatranscriptome	140	N
F062672	Metagenome	130	Y
F074020	Metagenome / Metatranscriptome	120	Y
F075330	Metagenome	119	N
F078820	Metagenome	116	N
F083241	Metagenome	113	N
F089415	Metagenome	109	N
F091864	Metagenome	107	Y
F099409	Metagenome	103	N
F104428	Metagenome	100	Y
F105340	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24662J20072_1001844	All Organisms → Viruses → Predicted Viral	3643
JGI24662J20072_1002484	All Organisms → Viruses → Predicted Viral	2944
JGI24662J20072_1003141	All Organisms → cellular organisms → Bacteria	2476
JGI24662J20072_1004361	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1941
JGI24662J20072_1006412	All Organisms → cellular organisms → Bacteria → Proteobacteria	1403
JGI24662J20072_1006769	All Organisms → Viruses → Predicted Viral	1337
JGI24662J20072_1008746	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	1075
JGI24662J20072_1008965	Not Available	1054
JGI24662J20072_1009497	All Organisms → Viruses → Predicted Viral	1003
JGI24662J20072_1010213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	946
JGI24662J20072_1010381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	934
JGI24662J20072_1010794	All Organisms → cellular organisms → Bacteria → Proteobacteria	904
JGI24662J20072_1011960	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	830
JGI24662J20072_1012579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	796
JGI24662J20072_1012920	Not Available	778
JGI24662J20072_1012996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	775
JGI24662J20072_1014023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. K31	729
JGI24662J20072_1014330	Not Available	717
JGI24662J20072_1014774	All Organisms → cellular organisms → Bacteria	701
JGI24662J20072_1016592	Not Available	641
JGI24662J20072_1017043	Not Available	629
JGI24662J20072_1017327	Not Available	621
JGI24662J20072_1017448	All Organisms → cellular organisms → Bacteria	619
JGI24662J20072_1017475	Not Available	618
JGI24662J20072_1017947	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	607
JGI24662J20072_1017981	Not Available	606
JGI24662J20072_1019199	Not Available	579
JGI24662J20072_1019440	All Organisms → Viruses → environmental samples → uncultured virus	575
JGI24662J20072_1019885	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	565
JGI24662J20072_1020117	Not Available	560
JGI24662J20072_1021582	Not Available	534
JGI24662J20072_1022453	Not Available	520
JGI24662J20072_1023249	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24662J20072_1001844	JGI24662J20072_10018442	F010945	VVTRTDCPCGKTGLSSAQMTMHNRSKAHKEWARDDGEVVEDVDRDFEGILAAARQGEDVRHIAKMARSIFRARGWPNDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKHISAETERIRLAGWGKGWNIT*
JGI24662J20072_1002484	JGI24662J20072_10024845	F089415	MQRLQANLYSVFLAEERDGPPNDADYLYDSDICVRELPLGSGRTLCESLKPDSLHVAQYLAYHRLQWFDGTKGRMAFSKKGRPRMCKCGDVGSDAETTRPRYKD*
JGI24662J20072_1003141	JGI24662J20072_10031411	F051987	LVAMKDYIYSLLEKYGGKISCWAWNKRWGDKNKSRYISAKTGKYYTIDKKTGLVKK*
JGI24662J20072_1004361	JGI24662J20072_10043613	F083241	MTPWSILQYVEVVEPIGDAFTDWETFYAAWENQAAKLMPVEYQEEYKIRHWFPGGPTPGYFLQLSTPTFSPDATAVTAPTSFKLVTTGLRSINVRTS*
JGI24662J20072_1006412	JGI24662J20072_10064122	F031529	MARLLDHSFPDAPTEYDPDIWQRVLRDVEISLTKTELPLQVEGKDENNALTWFMT*
JGI24662J20072_1006769	JGI24662J20072_10067692	F043883	MPRYNELHDIVSALVAEKKSLKKDADKANAVQYGSVRFNSRAEARAWWEKLPPAQKQEHIQKNGNQSVLKMLGGPGRNA*
JGI24662J20072_1008746	JGI24662J20072_10087463	F021867	SYPWRIGSVIRNTAHFSSLAVAELKEYINKEDNIMDNNVEQVDWDKVNRGKVRYGFALELYKKGGELTPSGMGRIEAFVDFVMGDITDEPAEEKRQSKLMSRLECKQVIETESEGSKAFVKAMVHIDASGLQDDDLEKVLQALKTGKITMDNLQASLDKIYSIKQSYK*
JGI24662J20072_1008965	JGI24662J20072_10089652	F089415	MQRLQANLYSVFLAEERDGPPNDADYLYDSDICIRELPCYDKEGKRNGRTLCESLKPDSLHVAQYLTHHRLQWFDGTKGRMVFSKKGRPRMCKCGDVG
JGI24662J20072_1009497	JGI24662J20072_10094971	F099409	MELTHIEVTLNEVADLADPPLPRDNSRLHVSTLVNRAAKLTGNTWYEDEEPSPEGWNIMALGXXWEWASRPTIIDRARAEGLEFTPQVVREVDGIVGSLDGVLSSPLAPDHIVAVVEAKSRHSSPSDPRDNWRYMVQSMAYLYMTGCTSLWMPILYLPRRGPPDSPFHLYRIEFEPHQLVENWVMLRNVRDA*
JGI24662J20072_1010213	JGI24662J20072_10102131	F105340	LPARKKGSNYNTGGTTTLISPTTITRAPKKLYTGDLILIDAGGTIAESITATLKPSGVFMGCNYVDADGSQKFSRYWPGEAITAATSIEFHVITDPDQTYYIQGNATCSHGEICKVLNYTATVSTASAGSTKTGQSAFFVETSAAGVETIVGNVRVIGYKKDPNENPDGLDQYPVLEVWLPTHRDRFATTTVSTA*
JGI24662J20072_1010381	JGI24662J20072_10103813	F074020	MKTMLCGNCGHPVNREKDRIVVSTFSGTTKRVRWYCPKDCGNGGMKGILGKARQLLRMG*
JGI24662J20072_1010794	JGI24662J20072_10107943	F013236	MEWIQSHWVSIVGTLAVIGGGMYIPFVRGLVITGLKTVVSETVLKKVAIQIIGKLVKSSKNKLDDVWFAEFKKNVDDA*
JGI24662J20072_1011960	JGI24662J20072_10119601	F014327	MREQAAALLSVAETELEKGEVDTFNRMITEAQEKMEQADIFDQAASKVAVLKGDFNRPLNTVPIADKDAAIYDPLDTTSRTKNDYKPASWVKGLPAMAQPIWVQEQMGENLHDEARFMTDTFTKWMRSPSDDIFWKTASPDEVKAMQEDTDAEGGFFVPEQFINQTIHDPGVPSSQLRPLCTVIRVSSKDGYVPTMGSASWAAIAEEAAYSDQTPTVGQV
JGI24662J20072_1012391	JGI24662J20072_10123914	F000226	MNDRTIKALPEYLQPKILSAVAYINECSPNLNKAVERINTVREHLSDKEVMWVMSLLTFEKLLDLVKDSSEFEKYTSTMKERTL
JGI24662J20072_1012579	JGI24662J20072_10125793	F005894	LMKLLDHSMPMAPDDYDTDTFVRXLRDXEMALTKIDFPEIVSGKDDTNGISWFME*
JGI24662J20072_1012920	JGI24662J20072_10129202	F011673	MNNQQSKVLPIYLQPRILAAVSFIHRSPNKEIGLERINKVSRKLSDREMMYVLSLLVFDNILDMVRDSDEFKNYVSTKRTVH*
JGI24662J20072_1012996	JGI24662J20072_10129963	F005894	MKILDHSMPMAPDDYDADTFVRILRDLEMALTKIDFPDIVSGKDDTNGVSWFME*
JGI24662J20072_1013700	JGI24662J20072_10137001	F032241	DAMVRTXLTMLEMLEIQFASNTKRLQVTITEMSKAVLRFRDEYKKEHGEYDEADFIKSLCSLTGFSSAYFTMVEAINRADEDMKESVLSDKVGGYAPYEIEKATKDEHFRRGITDAYLESEKQIGALAPRALKYDLKIIEAEENLSPPEKRLLAKQMMDDFTHKGGRTRDTEPHFLLYKQKAMKFLREVQHWNLNGLKNQEVLALVGLIEGVYNHFKEDRRLNGQMFSRKTGENIFGAKETNKG*
JGI24662J20072_1014023	JGI24662J20072_10140231	F037418	MKHLRDQNLTYLGHLLQAWNIATRLFLLSLTALVHGIFPSIWVHSVTSRVH
JGI24662J20072_1014330	JGI24662J20072_10143301	F053221	MSVIDDRSDKQQSDASSTGSTKTNNKVTPAAPAAPADMPRDKAGNIAYECGNFFQSQSQGHSDGLPRPPHAHEPRSWASLLVDPDILSLPAPAWQQPGFRYGLLNRVHAGPYFDLGYNGHCHGCGAHFLEFAWAQEHKCTEEQAFRDVTRRFVRDYRALRKAARQAPASVPKKEKGIVGRLLRMFTGR*
JGI24662J20072_1014774	JGI24662J20072_10147743	F023881	MTTRIKSKFKNNYFTKLTKPDGVTEGYNGSYVFGDLGGVKVGNNSLKKYYEQINNGSRKSNI*
JGI24662J20072_1016592	JGI24662J20072_10165924	F075330	MTDPAIIASLIATIAVVVLAMANLIYRFGRLAAQVGNLRRDQTRRHDEYLRQSKERYDGIIDRLARLENHFISGAVGDD
JGI24662J20072_1017043	JGI24662J20072_10170431	F013312	MLFVKGRNFTWVFNITLFIHRNQAYDVTILGLISSADNTTCNLLAVAAVTFITSLSATTSGAESSSDVPLADIALTLKRLKTASLVXVIVIVIVSAFPESSDTSMDLITAVVADGTVYNVVALV
JGI24662J20072_1017327	JGI24662J20072_10173272	F062672	MDYDYSLIPPKCPHCRAMPVNDETVPKWMIREFGVCYCEEEQEEEAX*
JGI24662J20072_1017327	JGI24662J20072_10173273	F091864	MTKKKLGLIGPIIKDNHGHECXGECKGNIHVIYGRK*
JGI24662J20072_1017448	JGI24662J20072_10174483	F000930	MYKVIRWQTDGTEEVWEAPKKPTLDQLYKLIGCSTVERQSGYDKDISNRTFDMWMDEESKCKAPEFIKKNERASTAWYEWQSRTGHQCIPGDFIAGNTVVCKKIKE
JGI24662J20072_1017475	JGI24662J20072_10174751	F104428	MQITLNSAAPAADRQGNPQWELRCADPFSTNSTYEAKFWIAAKDGEQPPPPATYWCILTQGALKINTKPPKEGGPIQPYNGFYDWMWRWRIDSRDHFHCPDAPEPPQTQNXVQPTPMAPAGAVNGSTPSPSFDVTRNSIERQTVFKAAASLVVATDLVDQSPEVILGRVRDLTVELWVILQNIGSEAPVATESVEVEEXDEEPLPW
JGI24662J20072_1017947	JGI24662J20072_10179472	F054156	MLEALLFTGQIPEIDWEHGDDLCDCTFQRIGYWTNPYLARTLKVRLCCAWKVLAEQNPEIAALMQEIPAYDDYNGKRWVSEPAAWDSKEADMPRALWHRQLSIQQDKPLEQVRREY
JGI24662J20072_1017981	JGI24662J20072_10179811	F048920	YTDGAVLLLQTCSLARWTRLAEIPHREETRMVTTPKPKPDHELVNELALAKAEADEAKERYETLRFEVKQRIQEKPGRMVIFGGTHEAELEEYWDKEGRYDPTQLVQFREKADQHTAELLYGDAWIADGYKFIAGHWDITQLKALAKRHGDLGEVEAAKIPPGYRVKLVSRTLDSRKLKKVTA*
JGI24662J20072_1019199	JGI24662J20072_10191991	F048920	MVTTSKPKPDHELVNELALAKAEADEATERYKILCFEVKQHIQAKPGRVVIFGDTHEAVLEEVWGKEGRYDQTRLVQFRERADQHTAELLYGDAWIPEATKIIAGHWDITQLKALAKRHGDLGEVEDAKLPPGYEVK
JGI24662J20072_1019440	JGI24662J20072_10194402	F040337	MRVKIMENKRGKNMKELKPNTLWLVIKHVHYESSSFTDDYSVPKATKNKGQADQYLHSLI
JGI24662J20072_1019885	JGI24662J20072_10198852	F078820	MAKIKSRITSKPPKMIKAPYIGSYLEGQQTMGKVYNPSLRKFYGWDNIKPEWTSKA*
JGI24662J20072_1020117	JGI24662J20072_10201171	F037815	VGVAGFPGWVQGEADYIAFKXIKYPWLIVNRKQLWEMVETKLKERNYSPSIKPWYEKEAYATYDRSYFGKKDKFCWVPYEDIETLKDVEKLDK*
JGI24662J20072_1021582	JGI24662J20072_10215821	F010945	VTRTDCPCGKADLSSAQMTMHRRSKAHKEWAVENGEIEDVASAGDSDFEGILSAARQGEDVRHIAKMTRSIFRARGWPSDEHPETVRDWLNLHNIPIIDVPIHSDPDEQRKHISEETERIRLAGW
JGI24662J20072_1022453	JGI24662J20072_10224531	F019813	MVADPKEIELWTPPGVTHTRVAQVGRNAETGGVIXDYQFQVHDEVTGRSHQFRVLVDDETSIAHIEEMVGNAMESWLVDVRMRHSKPAPTPAQRKEIGKILDQIRISAIKRKRSSNN
JGI24662J20072_1023249	JGI24662J20072_10232492	F011408	MNFYDPTDVNVEELIKRVRIGRSTEELIRTPTGSSLISRATQDYRDGIEALQKMAMQEWVGSSEEELQQYRKISNNLATPLKLLHWLDAILNDGENAESIARHRDAGEI*