NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001716

3300001716: Marine viral communities from the Pacific Ocean - LP-42



Overview

Basic Information
IMG/M Taxon OID3300001716 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0067852 | Gp0056797 | Ga0006066
Sample NameMarine viral communities from the Pacific Ocean - LP-42
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size53391889
Sequencing Scaffolds23
Novel Protein Genes29
Associated Families25

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1
All Organisms → Viruses → Predicted Viral1
Not Available9
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Megamonas → Megamonas hypermegale1
All Organisms → Viruses → environmental samples → uncultured virus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)49.9996Long. (o)-144.9998Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F000567Metagenome / Metatranscriptome1020Y
F001594Metagenome / Metatranscriptome666Y
F002612Metagenome / Metatranscriptome543Y
F002811Metagenome / Metatranscriptome528Y
F007532Metagenome / Metatranscriptome349Y
F009538Metagenome316Y
F009754Metagenome / Metatranscriptome313Y
F010368Metagenome / Metatranscriptome305N
F011291Metagenome / Metatranscriptome292Y
F016594Metagenome246Y
F021786Metagenome / Metatranscriptome217Y
F025390Metagenome / Metatranscriptome202N
F032038Metagenome181Y
F034709Metagenome / Metatranscriptome174Y
F037765Metagenome / Metatranscriptome167Y
F040679Metagenome161Y
F045147Metagenome153N
F049698Metagenome146Y
F052638Metagenome142N
F054091Metagenome140Y
F062831Metagenome / Metatranscriptome130Y
F073659Metagenome / Metatranscriptome120N
F081753Metagenome114N
F097508Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24518J20066_1001402All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium4120Open in IMG/M
JGI24518J20066_1003798All Organisms → Viruses → Predicted Viral1804Open in IMG/M
JGI24518J20066_1004991Not Available1376Open in IMG/M
JGI24518J20066_1006090Not Available1149Open in IMG/M
JGI24518J20066_1006106All Organisms → cellular organisms → Bacteria1145Open in IMG/M
JGI24518J20066_1006374Not Available1106Open in IMG/M
JGI24518J20066_1007431Not Available974Open in IMG/M
JGI24518J20066_1007787All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium934Open in IMG/M
JGI24518J20066_1009256All Organisms → cellular organisms → Bacteria812Open in IMG/M
JGI24518J20066_1009532All Organisms → cellular organisms → Bacteria793Open in IMG/M
JGI24518J20066_1010836All Organisms → cellular organisms → Bacteria719Open in IMG/M
JGI24518J20066_1011008Not Available711Open in IMG/M
JGI24518J20066_1013071All Organisms → cellular organisms → Bacteria → Proteobacteria633Open in IMG/M
JGI24518J20066_1013493All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium619Open in IMG/M
JGI24518J20066_1013898All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium606Open in IMG/M
JGI24518J20066_1014597Not Available587Open in IMG/M
JGI24518J20066_1014838All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.580Open in IMG/M
JGI24518J20066_1015892Not Available555Open in IMG/M
JGI24518J20066_1016652Not Available539Open in IMG/M
JGI24518J20066_1017372All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium524Open in IMG/M
JGI24518J20066_1017638All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Megamonas → Megamonas hypermegale519Open in IMG/M
JGI24518J20066_1017821All Organisms → Viruses → environmental samples → uncultured virus516Open in IMG/M
JGI24518J20066_1018020Not Available512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24518J20066_1001402JGI24518J20066_10014023F052638MIHWHTEKKIRWHMGFMPFAKFCMRRLIKKIYKDGYYDGVAFAKTRNKIIRGLDDISMTPSQWMTALRLTQKIDNEGRKILFVDGVKIK*
JGI24518J20066_1003798JGI24518J20066_10037982F011291MDKYEINVWKDAELLTKEVVDFPSNEECYSYVTDKYYAPGTWTGSHQNKAGVTLNRPPMGIRITWSKKGNTDYKPKKLSAEEKKLQRELYDSITPEVIEELGPNEMLAKVRKDYYGHPDAKGMEDKK*
JGI24518J20066_1004991JGI24518J20066_10049911F034709MQNQKQTDRIKKQLEKLSTVMQKIEQVAKEEISSNEDYLQVCGALLAVTRNMYVEALGPFDASRMFEAVAQSFHIQEELIEFFREGEKPTXH*
JGI24518J20066_1006090JGI24518J20066_10060902F097508MSKDWLKGRGQVSIPKPAKAGVNSDKGTVKGGAGQPLKMAGKGPVKGTMQAMGAAKKGGKYTWTGANDTKW*
JGI24518J20066_1006106JGI24518J20066_10061061F037765MTTHFSSGVTNVKGKENATSLFSGIKQPLITGATAPAEFAYQNDFQTYNASDWQTVTSTGASDYQLADYAFGWLRQGDGAPAAGEIQGVADYECF
JGI24518J20066_1006374JGI24518J20066_10063742F081753MIKKLIEKIFGRFCKCEEKTKTTSELLREGFDEEQETLKLEESVVEKIQCXTHSRFKXSCPXCVEAAK*
JGI24518J20066_1007431JGI24518J20066_10074312F025390SPLKNAMMPDPFPVTSTQGGGYDFLGQTSFFDDFYDIITRSNTSSNGTGGSPGWYVAQTSAGNQVLTPTNLAHGGWLKMDETVGTNDAVNQLSTFTNFQLSTLMNSAFECRLTVEDVSATELVVGVIDTAVTGSVVDITDGLYFSNFSDPTSITAGTGLYLHSEKNGTITSSSALVDPYTGDTFVMEDGSLQAASATQLATPSNSFIFGFNIVPKGLNGNTNTAVIQSYLGPVGKQPMAAESIATTNLPDDLGLAIMIGTKNNTTQGATIWVDYVKMISSRSFGSSTTK*
JGI24518J20066_1007787JGI24518J20066_10077872F002811MTTHFSSGVTNVRGKSGGTSLFSGIKQPLITGGTSPQEFAYQDDFSTYNASDWQTVTSTGASDYQLADYAFGWLRQGDANPAAGEIQGVADYECWQYSSTRAWYFETKIAVTDVSEANLWVGFAQNGYADSDTLPNDGIGFSHLQDTTTIQFVSRKGGAGVSFDMLDADGTYTFADSSIATQSATVLAEPSNPVRLGFLFQPLGSEPGQTALQYKL
JGI24518J20066_1009256JGI24518J20066_10092561F000567LMKESLLKLTHKITTWHEKMFKYITLKSKTSIFFTWLLVFICLYEIFEHIIIPIFLIWWGLS*
JGI24518J20066_1009256JGI24518J20066_10092564F049698VNKKHYAFFLKKNRRKNPIAKDLSDGRYHQRVVKDKTNYSRKEKHGQTDRHYEHSDSS
JGI24518J20066_1009532JGI24518J20066_10095324F000567MKENLLKLTQKITTWHEGMFRYLTLKSKTSVFFTWLLVFICLYEIFEHIIIPIFLIWWGLQ*
JGI24518J20066_1010540JGI24518J20066_10105403F016594MTKFILFMWLCSGVAHDCKRIVIPYTTFDSYRDCSLYGYEHTVNILNNMPEEELEKWQIHTRFSCKAEQTI*
JGI24518J20066_1010836JGI24518J20066_10108361F000423MSNELKQSIFYIKYYATKHKCIIERKATLDNECYEGVHKKHGYAYKRYVDLDAMEEIDNGKTQYRCASVKWT
JGI24518J20066_1010836JGI24518J20066_10108362F032038MSEVKDKKDIWLVIEKYVYSNSTPSHSVKKTATSVEEAIGFKLALEKLNEQTDVSYFLASDVDTVMNNVITAHNQSVKTKEVA*
JGI24518J20066_1011008JGI24518J20066_10110083F002612VRLAERIFKLIRTRQTQIIEIVTSNQVKDWNDYQNHLGQLDTLNYIEQELSDLLKKQEQDEHSNFTETRR*
JGI24518J20066_1013071JGI24518J20066_10130711F000567MKENLLKLTHKITTWHEKMFIYLTNKAKTSVFFTWLLVFICLYEIFEHVIIPLFLIWWGFS*
JGI24518J20066_1013493JGI24518J20066_10134931F009754WLRMGDASPVAADIAIAASEDVFQYHSQKAWYFETSIAVTDVSELNTFVGFAANGYVNPNAVPDDGIGFSHLEDTTTIQFVSRKNGAGTSFTMLEAGSTYAFADSSVTTQSATAYNMPDNNVRLGFLFQPLGTEPGQTAIQYKLFLNGNIVGTQAATTVPDDLLMELKIMYESKGILTNDLYTDYVQTVQQR*
JGI24518J20066_1013898JGI24518J20066_10138981F001594MEKTKLTKNEYLDSLDPDNLNLEKSDLINFCHGCIEEWKKNKLGNFKYIVAMELMIGAVRITPEDVMKTVWKKILIWFYDLQYKNALAEKEGMLRRLADIGSG*
JGI24518J20066_1014597JGI24518J20066_10145972F000567MKESLLKLTHKITTWHEKMFKYITLKSKTSVLFTWLLVFICLYEIFEHIIIPIFLIWWG
JGI24518J20066_1014838JGI24518J20066_10148382F062831MNKRTVKDVERRILRIMMKDEKALRELLEVETDGTPGAQLDGLMIRIEQLLGRISLNQNKLMLLQEIRE*
JGI24518J20066_1015892JGI24518J20066_10158921F054091MIIEEIPFFTEFVLLGIILGFGYGFTKXFLNHAKDKNKVKRTERKQEKDHNLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQR
JGI24518J20066_1015892JGI24518J20066_10158922F045147NMAATGEQVAIINFSTTVSAKVFDKPLTFQIKVNTDNATGTYQTGIIPLFCYFGAAVPKTWTTSSVLLHIHADLAHAFPIFRDQDNMNMLDTGIGL*
JGI24518J20066_1016652JGI24518J20066_10166521F000423MKSPFKQAIFYIKYYAKKHDMVIERKATLDENCFEGRHKKFGYPYKKYIDVWATEEINNGQPQYRTASKS
JGI24518J20066_1017372JGI24518J20066_10173721F021786MTTHFSSGVTNVKGKQLGTSLFSGIKQPLITGGTTPAEWAFQDDFVQFSQTTLSPWTITDPGGTAYMLAQYPQGWLRMGDASPVAADVAIAASEDVFQYNANKPWYFETSIAVTDVSDLNIWVGFALNGYANPNALPSDGIGFSHLEDTTTIQF
JGI24518J20066_1017459JGI24518J20066_10174591F073659MTESANIQFDGERKAIVSYTATIASTTAENYTFAVSAFNASTLNGKAVTRLDINRAWFNVSATAPAAAMTIEWNTSGTNELALTGVYSGEYDFTSIGGLVNPEPTDWDGGIKILFNSVTNSDTCSIVLELLKKYT*
JGI24518J20066_1017638JGI24518J20066_10176381F010368ALTDVGEGNIWVGFAQNGYADSDTLPTDGIGFSHLQDTTTIQFVSRKNGAGVSFDMLDSAGGSTYTFEDSSIATQSATVLAVPSNPVRLGFLFQPIGSAPGVTAVQFQLFLDGKSVGTQAATTVPDDLEIGINAMIAHKGTVGNDLNIDYIQTVQSRIAGTGVSA*
JGI24518J20066_1017821JGI24518J20066_10178211F007532MKDKNKTIIDYVIRWLDSNIDEPPPEGIQEDSANLKEKINLALDPKTTAQNIDDGDF*
JGI24518J20066_1017821JGI24518J20066_10178213F009538ATKQQPGFSDNQDGWQIVRNGLNFFRQYFAKEYMVLLD*
JGI24518J20066_1018020JGI24518J20066_10180201F040679SEPGQTAIQYKLYLNGNIVGTQAATTVPDTVEIGLNAMIAHKGTTANDFNVDYLQTVQQR

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