3300001650: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046

Overview

Basic Information

• IMG/M Taxon OID: 3300001650
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057371 | Ga0003885
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4676090
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.550409
  • Long. (^o): -72.180244
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005285	Metagenome / Metatranscriptome	406	Y
F015539	Metagenome / Metatranscriptome	254	Y
F018438	Metagenome / Metatranscriptome	235	Y
F022237	Metagenome / Metatranscriptome	215	Y
F023941	Metagenome / Metatranscriptome	208	Y
F029530	Metagenome / Metatranscriptome	188	Y
F035094	Metagenome / Metatranscriptome	173	Y
F037452	Metagenome / Metatranscriptome	168	Y
F043634	Metagenome / Metatranscriptome	156	Y
F053913	Metagenome / Metatranscriptome	140	Y
F057773	Metagenome / Metatranscriptome	136	Y
F070443	Metagenome / Metatranscriptome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20280J16326_100070	All Organisms → cellular organisms → Bacteria	1821
JGI20280J16326_100287	All Organisms → cellular organisms → Bacteria	1103
JGI20280J16326_100326	All Organisms → cellular organisms → Bacteria	1042
JGI20280J16326_100618	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	693
JGI20280J16326_100621	All Organisms → cellular organisms → Bacteria	691
JGI20280J16326_100703	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	641
JGI20280J16326_100806	All Organisms → cellular organisms → Bacteria	596
JGI20280J16326_100831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586
JGI20280J16326_100955	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	543
JGI20280J16326_101038	Not Available	518
JGI20280J16326_101047	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20280J16326_100070	JGI20280J16326_1000701	F023941	AGFEPVWGFSCQVVIFGLLPVLCSELEKPFFVPSPAIRFAERAEGVKGPKR*
JGI20280J16326_100287	JGI20280J16326_1002871	F070443	MIGLEGATCNTALIPEMEEIGANILLAEHIGRALVVGREPADRLDVDVPGPLGKAGKPHVVDHTLTQRGHGRSPFGFKRQDLCPGTDQIPQHAVLNDYAFYGEAVQSNR*
JGI20280J16326_100326	JGI20280J16326_1003262	F035094	PRGPAVEKLFHETLKRLTENELIDFSRLWHDGCVKAIIEAQDVDRNHSAKV*
JGI20280J16326_100605	JGI20280J16326_1006051	F057773	IVADDVPPRVGGGAVEQGAEKSREVLLAAGIADHAFDLTGGDVEGSDQSLSAVTAVFELVPFDLTGHHGLVRRNAFQGLDASLLVDGDDAMGLVGSRRSLVDCTDIGALGIEGGIGLRGQPVPEAMRFEVSLFFKKRPTERCEMFGTRPRRIASSAISRWLQWLMGRSLASGFSHVIATIAQTCSGVYDAGAPGRGASTSRSGTDTPSAAIRHRLRQRRTVFGHTSSSSALSR
JGI20280J16326_100618	JGI20280J16326_1006181	F018438	MGIDDESSHPALCSEVADGVTRFLIYLGGVCLFREPDAGNLPVRFDEREQETGSSQTGLRRAMRKHPNSHREAK
JGI20280J16326_100621	JGI20280J16326_1006212	F005285	VSVGEGMHGVGGDRMAGSWSDMNQGSLFGKGTAFMTDERSEEPCPKGDRAFVRAKKRGNARGAKGGRKVEA*
JGI20280J16326_100703	JGI20280J16326_1007031	F022237	GRPILAETADRLVWAALQWRLSIVLLTIVVSPRRSDLRLLAIDDADARVCSRWFSVYLAVAPFNFFVVWLVERLGFGHEAVFGAATLVGLVITLYKIEMFWATRRPIARAILAATGGEPGPVRRAVAASWHWFFIALSLGIFFGSGIELALGKGAWVARAATATQGIFVALAVVGQASHNLIGRLCAGDAADIRVALRRTRFRRALSRLADTF
JGI20280J16326_100806	JGI20280J16326_1008061	F029530	MMKSRLDCSHRQXLSRRRALELAGGAAVFTFWQPKAHTLPAPQQYVDRLAVERIADHEAPRPPILIDAQTHVWWRAGGIRQMSERGEHFLKXLAGSRASVVGRPVPVADMGRVMFIEDVFLGSETDIAFLNSFGMRAAFDGVDLFPPREAAFIRSMAPSRI
JGI20280J16326_100831	JGI20280J16326_1008311	F053913	KAVSCCATTLALMAAIGLSPAMGQGPKPSGGRTWPGIAQPVKHDADPAHSANPSFQGASPQGTSQRGFVVMPFDPEAAKIKPHYEWQYHYTGRHAHWEGHWTLVTAPIQSAKPPTTPAP*
JGI20280J16326_100955	JGI20280J16326_1009552	F015539	VVQLQLLDLMISRECGAVPMDAATRADLIDLMARAIAAVFHEEGRRGNDRALAQSQN
JGI20280J16326_101038	JGI20280J16326_1010381	F037452	MGSSILSEVDDTSILRTGLSTCYWRPLGRLPASRLRPPRSGLERSDFVLWPLATDRIFM
JGI20280J16326_101047	JGI20280J16326_1010471	F043634	RFFLRYLLPADWQTASARNDRERSNRTRQNAEDLFKPKPQTTRADVPNDDSSAEYQPRRQPRIFAIPPVVPMSTTKVEPAAEPKQIRRKAIDKRGTREIPLSQFGRVRTLTSYGMTPAQVAELYGVAVGEIDRIIRRLR*