Sample 3300001619

Basic Information
IMG/M Taxon OID	3300001619 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0057297 \| Ga0003855
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	9959739
Sequencing Scaffolds	32
Novel Protein Genes	35
Associated Families	35

Dataset Contents

Total Genome Size

9959739

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → land → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.532967	Long. (^o)	-72.209488	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.532967

Long. (^o)

-72.209488

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000824	Metagenome / Metatranscriptome	874	Y
F001828	Metagenome / Metatranscriptome	629	Y
F002820	Metagenome / Metatranscriptome	528	Y
F009084	Metagenome / Metatranscriptome	323	Y
F010413	Metagenome / Metatranscriptome	304	Y
F011320	Metagenome / Metatranscriptome	292	Y
F019189	Metagenome / Metatranscriptome	231	Y
F019366	Metagenome / Metatranscriptome	230	Y
F020232	Metagenome / Metatranscriptome	225	Y
F022483	Metagenome / Metatranscriptome	214	Y
F023941	Metagenome / Metatranscriptome	208	Y
F025345	Metagenome / Metatranscriptome	202	Y
F027575	Metagenome / Metatranscriptome	194	Y
F027959	Metagenome / Metatranscriptome	193	N
F028235	Metagenome / Metatranscriptome	192	Y
F030838	Metagenome / Metatranscriptome	184	Y
F031220	Metagenome	183	Y
F036811	Metagenome / Metatranscriptome	169	Y
F036859	Metagenome / Metatranscriptome	169	Y
F037452	Metagenome / Metatranscriptome	168	Y
F038353	Metagenome / Metatranscriptome	166	Y
F040207	Metagenome / Metatranscriptome	162	N
F040778	Metagenome / Metatranscriptome	161	N
F045388	Metagenome / Metatranscriptome	153	N
F051498	Metagenome	144	Y
F052732	Metagenome / Metatranscriptome	142	Y
F055940	Metagenome / Metatranscriptome	138	Y
F058307	Metagenome / Metatranscriptome	135	Y
F063880	Metagenome / Metatranscriptome	129	N
F065985	Metagenome / Metatranscriptome	127	N
F066033	Metagenome / Metatranscriptome	127	N
F067943	Metagenome / Metatranscriptome	125	Y
F070436	Metagenome / Metatranscriptome	123	Y
F077545	Metagenome / Metatranscriptome	117	Y
F082958	Metagenome / Metatranscriptome	113	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI20250J16331_100009	Not Available	3271	Open in IMG/M
JGI20250J16331_100031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2661	Open in IMG/M
JGI20250J16331_100034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2638	Open in IMG/M
JGI20250J16331_100218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1869	Open in IMG/M
JGI20250J16331_100340	All Organisms → cellular organisms → Bacteria → Proteobacteria	1637	Open in IMG/M
JGI20250J16331_100371	All Organisms → cellular organisms → Bacteria	1609	Open in IMG/M
JGI20250J16331_100459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1514	Open in IMG/M
JGI20250J16331_100460	Not Available	1514	Open in IMG/M
JGI20250J16331_100574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium	1419	Open in IMG/M
JGI20250J16331_101849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	892	Open in IMG/M
JGI20250J16331_101883	Not Available	885	Open in IMG/M
JGI20250J16331_101904	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
JGI20250J16331_101970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	865	Open in IMG/M
JGI20250J16331_101995	Not Available	860	Open in IMG/M
JGI20250J16331_102001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	859	Open in IMG/M
JGI20250J16331_102043	Not Available	846	Open in IMG/M
JGI20250J16331_102083	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
JGI20250J16331_102156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	822	Open in IMG/M
JGI20250J16331_102168	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
JGI20250J16331_102327	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
JGI20250J16331_102480	Not Available	755	Open in IMG/M
JGI20250J16331_102527	Not Available	745	Open in IMG/M
JGI20250J16331_102934	Not Available	684	Open in IMG/M
JGI20250J16331_103015	Not Available	673	Open in IMG/M
JGI20250J16331_103047	Not Available	668	Open in IMG/M
JGI20250J16331_103326	Not Available	633	Open in IMG/M
JGI20250J16331_103328	Not Available	633	Open in IMG/M
JGI20250J16331_103751	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
JGI20250J16331_104252	Not Available	544	Open in IMG/M
JGI20250J16331_104573	Not Available	521	Open in IMG/M
JGI20250J16331_104660	Not Available	515	Open in IMG/M
JGI20250J16331_104724	Not Available	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20250J16331_100009	JGI20250J16331_1000092	F052732	MHLAAGVDRFSRWKAMPKSSPITREHILDAMTYMGTGPSRWPSGSGRTTYVVIDPRNGAAHPAKLVLTTAAEMAIGDRRHPIFSGGEPTNKRLRDLGFLVVEKAASAKLAS*
JGI20250J16331_100031	JGI20250J16331_1000313	F037452	MGSSILSEVDDTSILRTGLSTCYWRPLGRLPASRLRPPRSGLERSDFVRWP
JGI20250J16331_100034	JGI20250J16331_1000342	F063880	MGEYADRVRADIVSDNRARRILYLVYGALAVAAVCLLGGFATVVLVLGLGPVLLLIVVIEIYSRLQNWRRLRAAEDADADLGQARPEKSNEALPGNVIRKLRGRAQQAQAAGEPYLAADLRLAATTIERLDREA*
JGI20250J16331_100218	JGI20250J16331_1002183	F038353	MIIVLGDTFRFPTRTWRVFAVIVGLAFNLATQIALAADTIDFCATGTMTMGPFDEHIAEIRKANRYEKADIDELIAEQKAGGPDFFSTQVVIKEEQSGSGDFDLHLFQGFSDPQAKYNVTMEWRCKSADYPVAYFVGFKVRQITGQTIMVSREKGTVNIISLKTIDPDLDKPTSVKDAENHAVLCADIATGCIKTIFYGRY*
JGI20250J16331_100340	JGI20250J16331_1003402	F010413	MRHHAASPASSLPSLMMPCPVCAGRMVYHGRRPIAADVEDTIYACRRCGAELIRTSVCKTIEPDTQRPAAA*
JGI20250J16331_100371	JGI20250J16331_1003712	F023941	DRKFADSPLEQAGFELVWGFSCQVVVLGFAESSLFGAGKPFFIPSPAIRFPERAEGVKGPKR*
JGI20250J16331_100459	JGI20250J16331_1004592	F070436	MQDWMLISAPLALTLYFLAFQDQFRALLSWISALVN*
JGI20250J16331_100460	JGI20250J16331_1004602	F020232	MAEPPAEPIPPDFAEAFAYAVLVYEIWTPEEPGRLIQVGPRSYSIVEVCRFVDQFTDRLPERVYLKLRSYMHDYPDAKLKADLAADPTYATAVRCLRGMIERRTEDFKQRGGTAG*
JGI20250J16331_100460	JGI20250J16331_1004603	F045388	VRSSELTDDDLWRVIADNTDAMSVLIEKQFELDAEAGTPDPDSRQKLMLFNVQAIDNYNRQYRDCIAEIRRRYPSI*
JGI20250J16331_100460	JGI20250J16331_1004604	F066033	MTTQSRAVLQRILQRRTNWAPAGESFGCPRCHAKYAVIRRQTPPGMIPACEECDQEFPPTQDGEWLLYERADG*
JGI20250J16331_100574	JGI20250J16331_1005742	F019189	MKSLSTKLILSALGVALLATPAFAAKHHQASYQGLQNSAAGAPAPTTDVGTYPNGATRSGSVYSRESGADDNVIR*
JGI20250J16331_101849	JGI20250J16331_1018491	F022483	MDQPVKKHDFDYDYDSYGLERRLDDERAPDAAGYWFLAAVLFAFIAAGIIVYRAGNAEMQPAANYSSNPAAQTDPVTSPPIVPR*
JGI20250J16331_101883	JGI20250J16331_1018832	F036859	MPNKLAIISACSLLGSLLAFNVEAFPVSPAPQQAATSAVTLVRDFCGLNFHRGADGYCERNEAFSIYPPAPPLQVVAPLGCPDGFYLAPDGRCFAPLACPNGYYLGPYGQCFPYW
JGI20250J16331_101904	JGI20250J16331_1019042	F002820	MNEKQPTYRIEIKNSGKPPNENYGWKIYQNLDVLPILHSQQFFVSRVAGLADANRSRRQLVEADMQSQITNEQ*
JGI20250J16331_101970	JGI20250J16331_1019702	F040207	MGKLVGICVVVFMLAVGVLIVSGGSDLAALFAALRAEPLLEKVAWAVIVLVPLVLLPSVVWLCDTLVRQRKAAQALELRLDGVRQGVKELAKSQIDADAAVHHLARTDPEDAIGAVQQRLGEAERVAQVQQQRNEIGDLQSRVDAIRGQQQALKERL
JGI20250J16331_101995	JGI20250J16331_1019952	F067943	MPALNYVSQTPNSVSVTYTDMPAGATVVFVNKVSGKNTPAPGNALSKGGSGSTEISSSGVSSGEYYLQAQNSGQSVAQTVTFYIA*
JGI20250J16331_102001	JGI20250J16331_1020012	F040778	MSETIDIQTKPKSARDSSKDKRTLDQVEKWMETIREISREPVKN*
JGI20250J16331_102043	JGI20250J16331_1020431	F028235	MKRIWLAGILAVVLPGVACAQGPIPDPLAPNNYVVTPAPGGGSNALGYDSRQWSYWQTQTDPRGNMYGYDAHGNYWTYNRRTNSYRYFGTEPRWQARCYASVADFC*
JGI20250J16331_102083	JGI20250J16331_1020833	F001828	MKLYAPNVALFVIAGCLAMLGVLAAFPIELPIPALTGNSAWYIFLAWFLLAAGSAIPHSDGH
JGI20250J16331_102156	JGI20250J16331_1021561	F030838	MSQLFTRDERLILVDPAHGPLLRKVTQWDRLVAIFTDPDLVAIVLFCALGALLTVALIHALPGWVEVIATAQQGL*
JGI20250J16331_102168	JGI20250J16331_1021682	F000824	GYRDNMRVEVESDVTVTAKTVADLRALTTWPEGLVLDIHVDLDPRLSVVRVERAS*
JGI20250J16331_102327	JGI20250J16331_1023272	F025345	MEHANPTKFEPPRPASAVRTATIVIYTTLMLLAVTIPQSVVNWFADMNANPVQDTALRGAEALRNLSQRAGVATVYQRARDIFIAISGVEPD*
JGI20250J16331_102480	JGI20250J16331_1024802	F036811	MKGLVFGIGALALGLVAATPASADYAVVKFKDNGACRAWYDHTAKPWGTSQVLWVSEPSWDVAQTKGGYAMKHHWCKAWWK*
JGI20250J16331_102527	JGI20250J16331_1025272	F058307	MRHISVWIVEFIKLLGVKLLGGRRLHPIATQCPICQQMVRLHVNKAGRRHVFAHARGL
JGI20250J16331_102856	JGI20250J16331_1028562	F027575	MAALIAWLPVVRVDDLVKDGALSAVTRVFDALWRRRLRRXSILDKIINANRVLSMRSRPLSRP*
JGI20250J16331_102934	JGI20250J16331_1029341	F077545	MKSLNTKLFLSALGFALLSGPALAQKPADQYPVDQSKVVVRGQIVGADPDAQIRTQLSRQWDFRYGE*
JGI20250J16331_103015	JGI20250J16331_1030151	F027959	MPLALAEYLRHLATRCSRMSRDCNDPVTSKELVIISVELVEKAQAFEAEYAIPHADDSRAADITTREDDDEK*
JGI20250J16331_103047	JGI20250J16331_1030471	F065985	PFAHSRCCRELGRHELPPERTLLLRLSSYGLMRQSRRLSSPSAIASCEESTQVATSPCCQRNLLDVILRIFPWLPGPLPRRSHRVHAPVDFPDVIGLPPRKDGLASRFIPRTRLFVGEFSRLQTFRYVQAPKFVCLPDRSHRYGNAKGRPRLLHPGRTCFVASARTGYASRPKQAIDGTRTCTLLDPQHCRPLPFPPHSPPTIFCLCSNDSSVLHRRVTPRG
JGI20250J16331_103326	JGI20250J16331_1033263	F031220	SEGSDVSLIDDFVRMRRYRERASEFELLAENEPRSEVRFRYRIIARHYRELADRDERNDQAKMAECLEMLKLARREAAE*
JGI20250J16331_103328	JGI20250J16331_1033282	F051498	MNTRVEKQGPGSWVVFVNGQRHHEIFLTRAAARREAKRQKDKIDNES*
JGI20250J16331_103751	JGI20250J16331_1037511	F082958	VSVIGELAAFVARVKASDLPATDWERLRLHFLDTVVAARVGALIPEGKALQGLGDDGALPVRIGRQAAAIRLTEIDDI
JGI20250J16331_104252	JGI20250J16331_1042522	F009084	PNPTALRKAQQQVAEFHRFQKLSQDLVALNDRICRLRPVAQERGGWTEQEKKRLLRSIRKWPGK*
JGI20250J16331_104573	JGI20250J16331_1045731	F055940	DAIRRDAEIVKSGGSLVSTLYAADERWFAERHITAHNIASNKNPLSSPQGLNEIARMLAVGTITARIRSAVELDGVGQMLEKLRHGGLRGKTVIRL*
JGI20250J16331_104660	JGI20250J16331_1046601	F019366	MFYGEKESKTLSPRQRELVVLYLSYALDDVRALSEMGSHFLQMAIATISEEANLDTPVQPIQTTTPH*
JGI20250J16331_104724	JGI20250J16331_1047241	F011320	MRRQGCLLMTEEPEASVLTAKRAAQHVRLSRANDAYEHLCILTLLPSLAPLHLMLADTPWPHGFGATL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001619: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences