3300001453: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012

Overview

Basic Information

• IMG/M Taxon OID: 3300001453
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056247 | Ga0003483
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57862685
• Sequencing Scaffolds: 41
• Novel Protein Genes: 43
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Aquipluma → Aquipluma nitroreducens	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus saxobsidens	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002525	Metagenome / Metatranscriptome	552	Y
F007838	Metagenome / Metatranscriptome	344	Y
F012088	Metagenome / Metatranscriptome	284	Y
F014092	Metagenome / Metatranscriptome	266	Y
F023003	Metagenome	212	N
F024002	Metagenome / Metatranscriptome	208	Y
F024681	Metagenome	205	Y
F029177	Metagenome / Metatranscriptome	189	Y
F035127	Metagenome	173	Y
F036991	Metagenome / Metatranscriptome	169	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20197J15136_1000720	Not Available	4128
JGI20197J15136_1000926	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3656
JGI20197J15136_1001042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	3431
JGI20197J15136_1001647	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2663
JGI20197J15136_1002505	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2143
JGI20197J15136_1002677	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	2072
JGI20197J15136_1003436	Not Available	1817
JGI20197J15136_1003512	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1797
JGI20197J15136_1003536	Not Available	1789
JGI20197J15136_1003792	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1719

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20197J15136_1000093	JGI20197J15136_10000931	F104110	MYLGKDVTTEDSMELGKVSDVSISSSGEVYYLVEKGKDPNIRYYFTQEDVLASNERVVTRSVGEFTDDIAKRSHFLCALYGVEVRDTTNNRVGVLDNFVASPQGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLSQSEEDRIITDQALID*
JGI20197J15136_1000720	JGI20197J15136_10007207	F092956	SMPSKVNWMHDSDNRMLARYQHLHKSALKVKASQLQKIQRTETREVCISVLLKAVVICNDTLKEMGFEDYEAGHEQSLLEKSS*
JGI20197J15136_1000926	JGI20197J15136_10009261	F040159	MKALCLKIMVVASLLIYTNGIQAQTTQKEFSKAGSEYNVLDAWSGIWNAQGEARDSISASWYHVDWTLTGKRILNGYALEIMHQWKTKDFTQNGVEITGYDPIKKICMTHIFYDDGTWFNSTPTFTDKRTCIEDGATYYPNGKVEVSRWTWSFSDDWMSFVVIGENLKDDNWWKAFEGKGTKISQNK*
JGI20197J15136_1001042	JGI20197J15136_10010421	F098320	LSFTSVAVQVLLGAGHLSPYTDLVESSGVVTVMSPYSACS*
JGI20197J15136_1001647	JGI20197J15136_10016472	F041148	VKAGAEKLSRGRVLVPAGMSEAWRGFCRPVAGFLSFTSVAVQGLLGAGHLSPYTGLVESSGAVTVMSPYTVFS*
JGI20197J15136_1002505	JGI20197J15136_10025055	F053674	MKKKILFVLVFIMAVLVVNAQVTKTTVTKEKSARTTVKVADLQKAITDNIAKDYVGYTIKEATC
JGI20197J15136_1002677	JGI20197J15136_10026772	F086362	LGKRFTYLLLLLAGLVCSCTKDANLDEWIISNYSGSYKNIEYGENLIREFTAGIYEENAIPDDIKQLQYGRIEIDFQYFGGGLIYFMPLLYYGSMNKNNFDDDVEEPKFHMAIEIGHYNVIPFPVEYLFYTICTFRQPQYCRDTFSPVITGGNYTFIIDKKPEGMILQLKRGANILNIFPHAFFPDSSQLFFRDVTSYIDRNQGDSLKTVLMVGRGFAGIDKGIHDFNGQVTGLRIFKYTISNTDSGYELKQVRNQHSEYQKVTYTASDNFLGNDNFLKLKYQFYPYKFVDGELIPGGGMQTGESAKMLNNKSTSCYLESSDIGFYKVDICTIDKNNNVLRSSVKPFEIWIYPKEWDFEFYK*
JGI20197J15136_1003436	JGI20197J15136_10034361	F023003	MAKNQTHKIDADDDVDDVPDRADMGALADTLVDRGRAVLDRVPTVADSARDALAGAQDQVNGLSDMGIVAASGFALGVSSGLLLAGAPRAILILSMIPVALTLRSAFARGMRPARLLN*
JGI20197J15136_1003512	JGI20197J15136_10035123	F084837	IQYLTDPISPNGPAIWGSCVTRRQHRAGSWYFSQKAVTVQGGYGALFAVQVQVLLSITCVAVQG*
JGI20197J15136_1003536	JGI20197J15136_10035362	F083423	DLTPGMTVRARVRTSPAQPVGTWTSWAIAMPGADWEEHDEQAVWEEIDDD*
JGI20197J15136_1003792	JGI20197J15136_10037923	F056988	VGEAEDIPLFFTLIPVLALLSNYDQGNCLINVGTEGAL
JGI20197J15136_1003876	JGI20197J15136_10038761	F053674	MKKKLLFVLVFIMAVLVVNAQVTKTTVTKEKSARTTVKVADLQKAITDNIAKDYVGYTIK
JGI20197J15136_1004366	JGI20197J15136_10043661	F040159	MKTVCLTIMMTVFLLLFSNEIQAQTTQIESPKAGSEYNVLDAWSGIWNVQGEARDSISAPYYPVDWTFTGQRILNGYALEILHQWKTKDFTQNGVEITGYDPIKKICMTHIFYDDGTWLNSTPTFTDKRTCIEDGAMYYPNGKVEVSRWTWNFSDDWMSFAVKGENLKDNVWWKAFEGKGTKSNKK*
JGI20197J15136_1004641	JGI20197J15136_10046414	F102124	FRTATQLFLDQLKQLTDMTQAAGTTPWTDTAGRPGTELAREVLEHMRSMAEHTPAPTAHLDTFLQELRAKRALIGALQLQLTAFEQQMDILEQALQPLHEWGQEWSTVQRAITDTFVPPDAQLDP*
JGI20197J15136_1004894	JGI20197J15136_10048941	F079372	TVKVADLQKAITDNIAKDYVGYTIKEATCITTNNTFTYEVVIVEGNNTETLVYDKEGKFVKKLPPPPKKK*
JGI20197J15136_1005254	JGI20197J15136_10052542	F100040	MHIYQKYFLVVLWKILFSQATECIWENAMTKKETRPDLKKIISLGRKGIIDPDYMERWGQFKEDWTEADLATWNKLKEKMTISNSDELEFCPPPSSSEKVWAKKFILRAEERGLC*
JGI20197J15136_1005294	JGI20197J15136_10052942	F036991	RYLCQGKIDCLSEASNMSGIVARNLSGLIWSPMEVPDETDRDVTGDPGDAI*
JGI20197J15136_1005573	JGI20197J15136_10055733	F096256	RKAVRMASRKLESMLVTAMIATVLVSGCLSSLPLGSSPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENNSYGRYFELMKKRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDETAESWVVATAASGATIITQTTTALS*
JGI20197J15136_1007148	JGI20197J15136_10071481	F007838	AEDATKEALEKADRLRQLEKLTEQVNTQKESLQTIKDATEKLRKINRKVANYHNLELALSQVSDSYARVLGCLKTVNEHNCFEPSEYHIISESMMGLLSQTSYAISTLTVVLTDNLSEMTDGERLLNMNQALKELRENLGVINSAIIEVEILDNQRLQLKTLNYINSIFK*
JGI20197J15136_1007233	JGI20197J15136_10072332	F079367	TRGDVADDKFQHKDDIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAESEITRLGGAAFIEKSEPMIEELKVYFDNLYESLKRPQSEEVEK*
JGI20197J15136_1009011	JGI20197J15136_10090111	F041148	AEKLSRGRVPAPAGMSEAWRGFCRQVASFLSFTSVAVQVLLKVGNLSPYTDFVESSGAVTVMSPYNVFS*
JGI20197J15136_1009189	JGI20197J15136_10091892	F081920	MSVVLEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLCR*
JGI20197J15136_1009577	JGI20197J15136_10095773	F098320	PSAGWRGFCRQVASFLSFTSVAVQGLLRAGHLSPYTGLIESSGAVTVMSPYTVFS*
JGI20197J15136_1009975	JGI20197J15136_10099751	F054136	MIENKAQLLADLAYVGSKVQAKTNVYLFSGAAFQWHGLKDATKDIDICCSYEEADRIVSVLRMFGRMESVTGINDIHFLRIFLKSFALQIFIKEIWMGDEYQLLEAAHCDSLTFDGITFLIPDIKTLIMIKDRQIQALYNEWKKLKGEMCI*
JGI20197J15136_1011360	JGI20197J15136_10113601	F074797	MNESEPPMRCRENEHSVKTQRSMMPGEECSGNLLTGYMADVIEEA*
JGI20197J15136_1011781	JGI20197J15136_10117812	F046737	MKPGRISTTIKTAFYFIVFVAITEACNTGQGMMHGGGRSMDMGSWNWVPILISLVIGFLLGYLVARRRK*
JGI20197J15136_1013135	JGI20197J15136_10131351	F096256	MASRKLESMLVTAMIATVLVSGCLSSLPLGSTPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENTSYNRYFELMKNKSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDKTADSWVVATAASGATIVTQTTSAL
JGI20197J15136_1013153	JGI20197J15136_10131532	F024681	HRGRTDGGSGEVTRTSRPLLEEDAGQERRMASLTAEGGPGTGLTQPSGGPLFIGFEALARRLSALLEGLTPVHEKAALVSFVGTGITDPNRYEDAAAAFKQLRLMAPAHEGALVQVFRHQLREESQGNDFLYVHFAGDPLSFGFLICALTGGGLMAGWKLG*
JGI20197J15136_1014881	JGI20197J15136_10148811	F041148	IKGVSVAERVKAGAVKLNRGNVPAPAGTSEAWRGFCRQVASFLSFTSVAVQGFLGAGHLSPYTGLVESSGAVTVMSPYTLFS*
JGI20197J15136_1015030	JGI20197J15136_10150302	F042622	MERDLQYIKHQAPLLEYLRRHNWTARQVGSGQEFVGLCPLHPET
JGI20197J15136_1016846	JGI20197J15136_10168461	F098320	SFTSVAVQGLLGAGHLSPYTGLFESSGVVTVKSPYTVFS*
JGI20197J15136_1017751	JGI20197J15136_10177511	F098320	GWRGFCRQVASFLSFASVAVQCYMGAGQLSPYTGWVESSGAITVKSP*
JGI20197J15136_1018413	JGI20197J15136_10184132	F002525	WAGVDSAWEQDSVESWKMLENRADSLLSDARFVGRHLWFIT*
JGI20197J15136_1018528	JGI20197J15136_10185281	F102124	FRTATQLFLDQLKQLTDMTQAAGTTPWTDTAGRPGTELAREVLEHMRSMAEHTPAPTAHLDTFLQELRAKRALIGALQLQLTAFEQQMDILEEALKPLHEWGQEWSTVQRAITDTFVPPDAQLDP*
JGI20197J15136_1018833	JGI20197J15136_10188332	F035127	PGGRVDSAATIPDALAALASQLVDQLPHGLVIWKITDPAGTEHRGNGTLNGRLDLLTISIEELVDELYPQLHRSIDGGPRQAHDIAARATVLSSGQAVRVPWKDSQL*
JGI20197J15136_1019215	JGI20197J15136_10192152	F024002	MPVPAGVIRYFQMAAVVALILMATKDSGSAYLDGAHDPPIIAGQPMGFSIRRAVLTEDVRNLKAARCSHPLSGLRNLFGCSVEGTYDLGQVQPTDMQIDGGRCGRSMTQKQLDMMEARSRFNEMGRKAVP*
JGI20197J15136_1021266	JGI20197J15136_10212661	F012088	PMITTDAPAWLRRSDQAVTWARTMLLRDRAVVIDCETTDLPGGVTGNDGYQNLRNSTRTRLLR*
JGI20197J15136_1021346	JGI20197J15136_10213461	F071750	ALTNTAHLRKILEKHNFEYSTVGETKVITPGTMPNPLIPDLRAFKSENWEPKHQGDQAIVEVSMYEWEPNYAPQPEVIKTIRVMIRRDSTYADKTNEFLEEITNKYPNRSKRYFRNNELYKSYGESFNVFTNDTKIEVRTETIKPIYSRFYIVNFDLIK*
JGI20197J15136_1021609	JGI20197J15136_10216092	F014092	MKKVLIVMVLFMAVLAVNAQTTKTTGTKEKGVRTAVMVADLQKPITDNIAKDYVGYTIKEAASVTANSIVTYHVVIVKGTTTETLVFDKAGVFVKKLPS
JGI20197J15136_1024644	JGI20197J15136_10246441	F084901	PARERYEILVHIALPVCILLPILNYRYLIVVPFIAFLPDVGRAIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSDTNKMAEEL*
JGI20197J15136_1024862	JGI20197J15136_10248621	F029177	EGAPLYTAGLGTVSLCPTPTYLLQAGDAHRPHHLNLDKLDKRLMYGQILALAQTMETLDAAPADAL*
JGI20197J15136_1025144	JGI20197J15136_10251442	F102127	RAGGQDRRTSTKGNTTIESNCASGEGGGMSTTCPAWCNSPHRNDWDAESHDGPVWPNIASVDGNGDDSVQIGTRYQSQVGIVVTLEAQSLILTPEQARGAALALLEAASWAKDHRVV*
JGI20197J15136_1025323	JGI20197J15136_10253231	F050468	MDALSSGGLYETGKDAVGFQSAFRSSSEAYLAEDYQMPERLFRVIVRGRYAGAPEEGKEKFLLGSCEIGPEGLGGFETKRLFADVVQFRDEPFFDLGRCLPGDIAGFQLLPRVAES*