3300001407: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012

Overview

Basic Information

• IMG/M Taxon OID: 3300001407
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056201 | Ga0003478
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49110769
• Sequencing Scaffolds: 41
• Novel Protein Genes: 45
• Associated Families: 41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangdongense	1
Not Available	9
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F001604	Metagenome / Metatranscriptome	664	Y
F001823	Metagenome / Metatranscriptome	630	Y
F001962	Metagenome / Metatranscriptome	611	Y
F002289	Metagenome / Metatranscriptome	574	Y
F003319	Metagenome / Metatranscriptome	494	Y
F003565	Metagenome / Metatranscriptome	479	Y
F003877	Metagenome / Metatranscriptome	464	Y
F004019	Metagenome / Metatranscriptome	457	Y
F004294	Metagenome / Metatranscriptome	445	Y
F005924	Metagenome / Metatranscriptome	386	Y
F006194	Metagenome / Metatranscriptome	379	Y
F011357	Metagenome	292	Y
F012266	Metagenome / Metatranscriptome	282	Y
F012606	Metagenome / Metatranscriptome	279	Y
F013041	Metagenome / Metatranscriptome	275	Y
F013962	Metagenome / Metatranscriptome	267	Y
F015418	Metagenome / Metatranscriptome	255	Y
F024640	Metagenome / Metatranscriptome	205	Y
F024681	Metagenome	205	Y
F024897	Metagenome / Metatranscriptome	204	Y
F026747	Metagenome / Metatranscriptome	197	Y
F026933	Metagenome / Metatranscriptome	196	Y
F028660	Metagenome / Metatranscriptome	191	Y
F034725	Metagenome / Metatranscriptome	174	Y
F036441	Metagenome	170	Y
F042524	Metagenome	158	Y
F042642	Metagenome / Metatranscriptome	158	N
F044817	Metagenome	154	Y
F047390	Metagenome	150	Y
F054241	Metagenome	140	Y
F062280	Metagenome	131	Y
F067238	Metagenome / Metatranscriptome	126	Y
F069476	Metagenome	124	Y
F073982	Metagenome / Metatranscriptome	120	N
F077719	Metagenome / Metatranscriptome	117	N
F077735	Metagenome / Metatranscriptome	117	Y
F078011	Metagenome	117	Y
F092929	Metagenome	107	Y
F103636	Metagenome	101	Y
F105697	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20192J14887_1000094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9806
JGI20192J14887_1000725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4720
JGI20192J14887_1001023	All Organisms → cellular organisms → Bacteria	4097
JGI20192J14887_1001498	All Organisms → cellular organisms → Bacteria	3503
JGI20192J14887_1001559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3461
JGI20192J14887_1002262	All Organisms → cellular organisms → Bacteria → Proteobacteria	2869
JGI20192J14887_1003436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2265
JGI20192J14887_1004264	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1989
JGI20192J14887_1004381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1953
JGI20192J14887_1005273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium guangdongense	1721
JGI20192J14887_1005498	Not Available	1667
JGI20192J14887_1006279	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1502
JGI20192J14887_1006380	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1481
JGI20192J14887_1007059	Not Available	1371
JGI20192J14887_1007568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1290
JGI20192J14887_1009361	Not Available	1070
JGI20192J14887_1009518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1054
JGI20192J14887_1009593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1046
JGI20192J14887_1009754	All Organisms → cellular organisms → Bacteria	1030
JGI20192J14887_1010554	All Organisms → cellular organisms → Bacteria → Proteobacteria	959
JGI20192J14887_1010834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	938
JGI20192J14887_1011020	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	921
JGI20192J14887_1011202	Not Available	907
JGI20192J14887_1011867	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	854
JGI20192J14887_1011928	All Organisms → cellular organisms → Bacteria	850
JGI20192J14887_1011944	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	849
JGI20192J14887_1012631	Not Available	801
JGI20192J14887_1013049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	777
JGI20192J14887_1013082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	776
JGI20192J14887_1013353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	762
JGI20192J14887_1014149	Not Available	721
JGI20192J14887_1014196	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	719
JGI20192J14887_1014694	Not Available	695
JGI20192J14887_1014699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	695
JGI20192J14887_1014731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	693
JGI20192J14887_1016112	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	636
JGI20192J14887_1016272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629
JGI20192J14887_1016450	Not Available	622
JGI20192J14887_1019715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530
JGI20192J14887_1019873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527
JGI20192J14887_1021101	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20192J14887_1000094	JGI20192J14887_10000946	F024681	MSTFMSWLFHRGRTDAGSGDVSRTSRPLLEEEIGQGQRMQSLTTEDGPDTGLTQRSRGPLFVGFEALAHRQNALFEGLTPVHEKAALFSFVGMGITDPNRYEDVATAFNQLRLMAPAQEGALIQVFTHKLREESKGSDFLYLHFGGDPLSFGFLICVLTGGGLMAGWKLG*
JGI20192J14887_1000725	JGI20192J14887_10007254	F013041	LLALASLDLACRDHCPDVSATLTTTAFDRSSSRWLGISDLIAEPEGPSFISRTVARSRVDRLRS*
JGI20192J14887_1001023	JGI20192J14887_10010231	F013962	SVIIPSYESLRKRLCGQNETGTEAQGFMAGYVRDAAGRPVPRAHVWATWQILWVEQNGRLVSTNQQRTVETDSNSDGSYMMCGFTRNAQITAKVGMAGKNTVQEKLAFPANMVLEHDFQLGSR*
JGI20192J14887_1001498	JGI20192J14887_10014981	F042524	MKESEGLYRSFRFLKKALLGLAVVLVGLLLFGYFLFMRHVDAPKAWSAADRELQGGMLHYAEKVERKAKVFMRRPSDYYRSANGMLYATNDRLIFIGVAPGSKFE
JGI20192J14887_1001559	JGI20192J14887_10015591	F077735	ISARAFSLADRPQRAIRVTSVRMRREDRSSISSYPLADLGG*
JGI20192J14887_1002262	JGI20192J14887_10022621	F012606	VTVLLTEEHLRKIIEYHLLKEDEISDPVKLSRVVRKSLDAALGLPDLLWHDWD
JGI20192J14887_1003436	JGI20192J14887_10034361	F067238	MKEGPEVGNQVLISSHRKLLWSKATVVNVAEKPDKILAGMIERGERKRTAVEVSKAD*
JGI20192J14887_1004138	JGI20192J14887_10041383	F073982	PDVSAALTTVAFDQSGPRWLGISDLIAEPEGPTFISYKVARSRLNRLRFVTQDPKRT*
JGI20192J14887_1004264	JGI20192J14887_10042641	F024897	DSALAMLQSSLRLGYVGAPETYLSMGKRLEFSGRNTVAAKLYSDYLEAKYTEAVWDRSEAIDRPIPTADIAVAAHLPLLYMRARESELAIKTAAALSAFDPSRDTIVDRFVSDVGSRRRANWVARSSLLPCSTARNARSRDAIAFGACGVFRRKL*
JGI20192J14887_1004381	JGI20192J14887_10043813	F006194	EGARSARGGAKRSEQRVARNARGTAYMNLAAALATVFSAGVYTKDELQTAVCIFVSEMKTGGETGEGVVKAAQSLVNEVGARFPSSERTQILLADMVAWCLAEYYRESA*
JGI20192J14887_1005273	JGI20192J14887_10052733	F077719	MQSKYDPFDLEISVSPHGGIAEWQWTLSIGDGAPIEIGVVKGSRMDGIRAAREERMRLIGRAVEATR*
JGI20192J14887_1005498	JGI20192J14887_10054984	F092929	VRGGKYYFSGVKREASSKFDRKLPNSQSKKSNGVERKNIRRPNNFKSDDWYEKAALSMTISANDQR*
JGI20192J14887_1006279	JGI20192J14887_10062792	F011357	LRVKISIQAKKWRRSVPRAWKQTQLLHPAKIAGCVAISAFNILWHGHGIFRSSPSVLRFAIVGVVCYVVATIAEFLWLLYSGPSFTGFESPTAAKSATQAASTDPLVEQLKELPPAELREEVLQLAKEMKSFEAVSDREFVDTLAGARPVNVATEAERDEVLDQQSAELMQHNLRTWRAYRERFYRPARAFRDELRKRLGIRN
JGI20192J14887_1006380	JGI20192J14887_10063801	F034725	MLNNTERRGFAIPTAILVIVTLTIMVAGGFSLVSAERRSVADQKSQISAFRIAEQGLELFLVRRDSLLAGHPGFSHVPGATPDTAVIAMTGGVATVTLTRLRPVRGSQSGLYVARSRGVETVGAYAGTPQGVRTVAQYVLWEPAPMQVLAGWTALSGLQKNGGAGTLGGIDMCHDSASVAGVVVPVNPGYTGKVVAVGTPPVDSVAPDSVAIDWNGIL
JGI20192J14887_1006716	JGI20192J14887_10067162	F042642	MKNRKRETCTSGSVRDEDGNIPIYSANDRGDRGNVGIIRSPVRASILPDQNGPLAAHNALRE
JGI20192J14887_1007059	JGI20192J14887_10070594	F001962	VGARPVILKSETYNFHRIDLTRQAGFIVTIYDEDGLRLAATPFPTPAEAFTEARKIVDNRVEGPRK*
JGI20192J14887_1007568	JGI20192J14887_10075683	F078011	VLKRASKSRPSGEWSDDDYDVFDGDRHIGRIMWTHAGPADRQRNAHTAS*
JGI20192J14887_1008281	JGI20192J14887_10082812	F047390	STSANLGGGKIIGDLQWRRSDLATWNSISLTDTQVEQRVMVRNGLNDPWSNTIFFRMVLTWATDAPATYSANYQITLSQTVP*
JGI20192J14887_1009361	JGI20192J14887_10093611	F012266	LALQLPFCFEVRALSGRLVSSTPERPCDDMCGLDSLSSESDGDAADFLD*
JGI20192J14887_1009518	JGI20192J14887_10095183	F003877	VAYGSCVTSAVCTTVRNCMRDEGGPFEVGKGADLKPPQAAVVKSDGGERCGNVDKIPTGTIERGERKRTSVEVSKSD*
JGI20192J14887_1009593	JGI20192J14887_10095932	F028660	MRIAEEGLDAEGFVKPVMLGELGSVVEADGFAHRLWKFAELTGDXPSGEDSFSIDRXLNDAEAGLSFVENKQPLAISGEXHEVGFPMARHLTAFDLRGSFGDRAPXFDEAGGAAAWAPAVPSFEFVARQQTMPVVLLGGTVIDETID*
JGI20192J14887_1009754	JGI20192J14887_10097541	F044817	MASLQPPPTLPPLRPGVELSSVRIPEFVRFAALAGSLGAVLSACREVAPAFGPNIPLARQNAEEFFYSVGSRFTNIQRSPRILRARAQFGHYALT
JGI20192J14887_1010554	JGI20192J14887_10105541	F069476	MNRQAIGRIVSVLVGAGVLFGLQQGLGVKLYIAIPVAIVVYLAVKVAIGLLWGAD
JGI20192J14887_1010834	JGI20192J14887_10108343	F054241	MRIEETITAEIIRRRQFVALLGICQDCGQPVTEGQEFYRSDDGIRHALCLFDPAFAKRERELKSKTAQ*
JGI20192J14887_1011020	JGI20192J14887_10110202	F004019	MTDPSATVEQPHQILPPVDRGMSIGKATVITVASAILVMGSTYAVVKGTLSAGMTRLLAVISLLSLVALAYGLIELALAVIATTSERRRMAREVTERRQGDRARKPTPR*
JGI20192J14887_1011202	JGI20192J14887_10112021	F001823	MRANDRDLIRGGHYGQRPRVPRLKAEHMAAPTNAAYVKKILANSEPSTHGT*
JGI20192J14887_1011867	JGI20192J14887_10118671	F004294	FGEEPPPEICVPDKPLSEIEDNATQRAIQDAPYIIYSRFHLAHESWRLGIVYSVAPPTVGDIQILSAYRAGHEARPHLV*
JGI20192J14887_1011928	JGI20192J14887_10119281	F003319	LIIIATLVLRMYFRTVDQHNAMLISAGLAFAVQLGSYALLRPARPGHGAPGELMIRWAIGAVLRLFVLVLYAPLARIINLSVEAALVSLVTFFFMTMMAEPLLLEYDR*
JGI20192J14887_1011944	JGI20192J14887_10119442	F103636	DMPWQSATPGDVNNFVNANEVVGVEVYAGPGAPAQYTRGMQDCTTIVIWTKFKIRD*
JGI20192J14887_1012631	JGI20192J14887_10126312	F015418	MSIVSRRTFTKGLLASALVPGHSAIGQPNDPGSIAIIDTPHNAAKVASKLAAQNVKVVVRFFARKPQPGLREKIMASDGNMIDGVREPTVLIRN
JGI20192J14887_1013049	JGI20192J14887_10130491	F003565	YSVRPDGAYYQWRKIPPRELSIDLVADERLVWATERAEAS*
JGI20192J14887_1013082	JGI20192J14887_10130821	F026747	MWAPTRRKSGEGRADWEEPGAGARYKITVRTSRATGVVSTACKEGNLRQWGRLGMVGESRASNVVYGMTDHLGVGEGQMYRRSRVTPVEGRALACGVLEKEERSGDWR*
JGI20192J14887_1013353	JGI20192J14887_10133531	F024640	GEMMQKSQFEGDLKVGDRVRLIAETLAWRAEMTLQGQIGEVIERRDDGRFTVRFDNGRLLMAREPESFXLVPGAQGLKAKK*
JGI20192J14887_1014149	JGI20192J14887_10141492	F026933	TATSVATPRAADDTAPILVPDGAGIWMFGDHLRHLAGHAGTIPLALDEYGRCLICLRRGFFRPNA*
JGI20192J14887_1014196	JGI20192J14887_10141962	F036441	YDWVSLAAVWLGSRILRDLYGAKSDWRSKTVELLPPVHKLDEVANSLIGTGTAHATDVLWLLGYGALFFVLGLVALRWRSLAD*
JGI20192J14887_1014694	JGI20192J14887_10146941	F024681	TRVSRPLPKEETGKERRMESSTAEDGPGAGLTHPSGGPLFVGFEALAHRQNALFEGLTPVHEKAALVTFVGTGITDPNRYHDAAAAFNQLRLMAPPHDGALIQVFTHKLREESKGSDFLYLHFAGDPLSFGFLICALTGGGLMAGWKLS*
JGI20192J14887_1014699	JGI20192J14887_10146992	F005924	MKANVSVHYDVYRSKTDPSLRIATAADAGLPVHIKAKDWTLMPAGASPLHSDAARDIGVHGYCFFQVKKGK*
JGI20192J14887_1014731	JGI20192J14887_10147312	F003565	MQARVRLEGACHLWRKIPSRQLSIDLEADERFGWVTGRAEAS*
JGI20192J14887_1016112	JGI20192J14887_10161121	F105697	LKRSLFLAIATIALVAAPRVSHAQLGALKPIQLGIAGGAAQPMSDLSNEVKMGYNGTVALAINVPLIPVGLRIDGAYNQFGEKVIVANTKHVISATGNLVWRLP
JGI20192J14887_1016272	JGI20192J14887_10162721	F012266	PLALQLPFCFEVRALSGRLVSSTPERPCDDMCGLDSLSSESDGDAADFLD*
JGI20192J14887_1016450	JGI20192J14887_10164501	F062280	KTVPKLTASAWFLEEYIKLEVPRGSMHLLNQIFPNCVTIRVWGLVVALTLGLSGCSVLRPTESQPPHYFWDSNLQTKQIHAAVACTSLHALLTFNRLYASGTAKDKLEEATLLGESSLYASDAPLDSPCQRAGHPVGPVNTPGSTDRVKNITVSSDGTVSFEWDFASAVAESPRQTQTYYSYPEYLVSGGRXDR*
JGI20192J14887_1019648	JGI20192J14887_10196481	F000136	MAKAKLRILYGEGDRDVLAAQTAAMEKAGHIVQSAEGRKAVTEALNKNSFDLVLLGATLTRNDRHHLPYMVKKASSETGVLVMHADGSRHPYVDACTDTGASLESVLNRIESMKIAGMVPKAAAAAAG
JGI20192J14887_1019715	JGI20192J14887_10197152	F003877	IGDEGRSFGFGDQVADPKPPRAALVKSHGGERRGNAGTMIPAGTVERGERKRTVDDVSKRD*
JGI20192J14887_1019873	JGI20192J14887_10198731	F002289	MVEPVVQLDPGVDLQTAIAALIKVAENVEIVRWIELPASVLLFLLVPGDPDSGAVYVLDRKKGIWYAVDFEDDQFGGYSVSQLETLLKDCNFLDLIERPGLWRAGLRWVVLPGMQPEAA*
JGI20192J14887_1021101	JGI20192J14887_10211012	F001604	HEEPKLVIRKAPHVPVWSVWAVLEGTHSEELFEGSTEEEASNWINSAGQAWLEERRRKRNA*