3300001357: Combined assembly of Elkhorn Slough mat metaG (MD2A, MD6A, CD2A, CD6A)

Overview

Basic Information

• IMG/M Taxon OID: 3300001357
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0053859 | Ga0081572
• Sample Name: Combined assembly of Elkhorn Slough mat metaG (MD2A, MD6A, CD2A, CD6A)
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 829358478
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Elkhorn Slough, Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.82188
  • Long. (^o): -121.744
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015419	Metagenome / Metatranscriptome	255	Y
F056191	Metagenome / Metatranscriptome	138	Y
F102160	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11876J14442_10000001	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	241034
JGI11876J14442_10015051	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5188
JGI11876J14442_10068415	Not Available	1669

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11876J14442_10000001	JGI11876J14442_10000001299	F102160	MLTMILFALMVSVFISYVAYIIFKYGIQKSISESYYVLPKKLNFLFVLFTWLFAIPAMFLGNSLLMFFAGGGIVWVGANAAMHKNPTRTIHLIAAIGGMILGGLAMIFQYHMWYMTAGVAGLLPILYLVDKKHFMFWAELAVFIAITITLGVNIF*
JGI11876J14442_10015051	JGI11876J14442_100150512	F015419	MKYELKITDEQGNEHLYNVVRSSSDEPKNLNDFILEALSISEXKRXLPXLXQCPNGLEVHPSIKMKFKDYGSSLVGDKLEAMMVTWRCLVLK*
JGI11876J14442_10068415	JGI11876J14442_100684152	F056191	MFLLRASMHLLLPCIKCEARVRHALTAEMFKTFPSGGSMHASVKLEGIDGRAPQERVEHVA*