3300001339: Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B

Overview

Basic Information

• IMG/M Taxon OID: 3300001339
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0055689 | Ga0003725
• Sample Name: Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104542566
• Sequencing Scaffolds: 28
• Novel Protein Genes: 29
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	3
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Thermoproteus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat Streamer → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Octopus Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F021443	Metagenome / Metatranscriptome	219	Y
F038745	Metagenome / Metatranscriptome	165	Y
F043237	Metagenome / Metatranscriptome	156	Y
F051572	Metagenome / Metatranscriptome	144	N
F063403	Metagenome / Metatranscriptome	129	N
F073601	Metagenome / Metatranscriptome	120	Y
F075483	Metagenome / Metatranscriptome	119	Y
F100012	Metagenome	103	N
F100050	Metagenome / Metatranscriptome	103	Y
F104114	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20132J14458_1002388	Not Available	3801
JGI20132J14458_1002977	All Organisms → cellular organisms → Bacteria	3341
JGI20132J14458_1003963	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens	2810
JGI20132J14458_1006049	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	2135
JGI20132J14458_1009647	Not Available	1586
JGI20132J14458_1010660	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1481
JGI20132J14458_1013441	All Organisms → cellular organisms → Bacteria	1271
JGI20132J14458_1016932	Not Available	1083
JGI20132J14458_1017139	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1074
JGI20132J14458_1017757	Not Available	1049
JGI20132J14458_1017986	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1040
JGI20132J14458_1018362	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Thermoproteus	1027
JGI20132J14458_1021136	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	932
JGI20132J14458_1021152	Not Available	931
JGI20132J14458_1022298	Not Available	899
JGI20132J14458_1024848	Not Available	836
JGI20132J14458_1027209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	788
JGI20132J14458_1027336	Not Available	785
JGI20132J14458_1027962	Not Available	774
JGI20132J14458_1028642	Not Available	762
JGI20132J14458_1035860	Not Available	656
JGI20132J14458_1037469	Not Available	637
JGI20132J14458_1039681	Not Available	612
JGI20132J14458_1040338	Not Available	605
JGI20132J14458_1042705	Not Available	582
JGI20132J14458_1043355	Not Available	576
JGI20132J14458_1045844	Not Available	554
JGI20132J14458_1052426	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20132J14458_1002388	JGI20132J14458_10023882	F063403	MEQNFDRQEALRALRVAIRSVRRTPIRIPFGDDDRFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPSVITAFRLPAEDDDGNLVQAIYNAEPLPDIPVINLTPTDLFSDDSAFNATPALMTVIITTLLTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMPGDQ*
JGI20132J14458_1002977	JGI20132J14458_10029776	F100012	MDREKVLQALREAQAEYDIKDLDRLVRDAWEEGDVLYAEIVVELIERAVEILFNQHFLWVHIVESEDCEEWIPDGWYSFVAVHPETGQCLTFFNDPVYRRRSASFRARIRSADDAVDAVMRLAELIEQNLKSRAVE*
JGI20132J14458_1003963	JGI20132J14458_10039632	F013155	MELYQVIMVVIALANLAVTVWLLRLLLPVWRELRRIVFALDHFDFDEISRKFLNNEKPLAETIDVKVSEKRDEGYKELTVTRVYKKPLDPREIQEGFVRQMAEKLQ*
JGI20132J14458_1006049	JGI20132J14458_10060492	F051572	MSSGRTHAGPFAEVRTLADVVLDSCKKSAHFLRAHIDLCVLAALIKTVPIGVVKLRPAQAWRLLEELAAAGQDREKTRNALRKRAGEVLAQLGREMGNNVPAEALLARLSELFLKELEA*
JGI20132J14458_1009647	JGI20132J14458_10096473	F104114	MERLRLWLSRTQDEKFTAAERELKGAIVARYDEFADEWSLVRSVEDIAPSALAEIVIQTVEALLGLQWRLEWDYDADADDMVLGSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFGDAVQAVVDLADIIAKKLPVVRGQVSLIKEVK*
JGI20132J14458_1010660	JGI20132J14458_10106602	F075483	MMIELLAVQAITNLALAFFVIKLRRELYPMVAAAGQPYASFWIRSVDVLVVEAPQFEAAKTVIRVRWLFSEELHLTYSFRVYDVAMHPYRRHHYVRWRAWMQGDDRYRCEVEKPRGLARIYTKAIDVFCKEKEPPKEVVILPSRWRKRRYKRWTKPVRSGSAPP*
JGI20132J14458_1010660	JGI20132J14458_10106603	F013155	IALANLAVTVWLLRLLFPVWRELRRIVFALDHFDFDKLAKQFLNGEKPLAEAVDIKVSEKKEEGYRELTVTRIYRKPLDPREIQANFVRQMAEKLQ*
JGI20132J14458_1013441	JGI20132J14458_10134411	F073601	QVGAGCPLPGVSLALGRAMLQAKATCLVMXLPAKGREGQRMFGRLRFAWRCAIKIIACGNIIRALPVEQKALAGMGILRQQG*
JGI20132J14458_1016932	JGI20132J14458_10169323	F100050	MVFPMDAVVRYVVATVLAVVGGYVGYHFVPSVPFGVVGNVLFVGALFGLIVGLSRFTGFFGNVVNAFLLSFPLWFLLPGDWFIIWTGGNAGYAVGNVFGQLAVLSTMRKIEAKAL*
JGI20132J14458_1017139	JGI20132J14458_10171391	F013155	WLLRLLIPVWRTLKKVMSSVDQFDFDKLANQFLNGEKPLAESIHIKTTENKEENYKEIVVVRSFKRPLDPKEIQESFTRQMAEKLQ*
JGI20132J14458_1017757	JGI20132J14458_10177571	F043237	MDLEKTAKYIAQLSARGYKYAIIGQLSGYNRKLVKKLEYDGFVFYLCRLQTKKEVIAYCLERAQGTFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFISDCLNAIERASSLTYPSPKLYIAAVNKALRQLYSVLAYTYNDRERVRAIRKKVKHWVIEA
JGI20132J14458_1017986	JGI20132J14458_10179861	F043237	MDLEKTARYIAQLSRHGYKYAIVGKLARYNKKIVKKLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLASKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLKVIERASSLKYPNHKLYTAKVNEALRNLYSILAYTYNDRERLRAIKRKVKHLFVEALKKNYGIEPKKAMEDYRRFVVKFSDVLKKKQRANPSTS*
JGI20132J14458_1018362	JGI20132J14458_10183621	F013155	MELYQIILVTVAAANLAVTIWLLRLLLPIWRTLKKVMNAVDQFDFDKLAKQFLGNETPVAESVAVKTTEKKEEGYREISIIRTYKK
JGI20132J14458_1021136	JGI20132J14458_10211363	F013155	LLIPVWRTLKKVMSSVDQFDFDKLANQFLNGEKPLSESIHIKTAENKQDDYKEIVVVRSYKKPLDPKEVQENIVRQMAQEMQ*
JGI20132J14458_1021152	JGI20132J14458_10211522	F043237	MDLERTSRYIAQLSRHGYKYAILGELSNYNRELVKRIDLEGFVFYLCRLPSKREVIAYCLKKTDKPFKVYCLASKPLEXPHMPLKLHYDEKTRRLRLLAQKSFINDCLNAIEKASEVKYPSPKLYLAHINRVLSQLYAILAYTYNDRERVRAIRKKVKHWVVEALKRHGLKPKDAMTDYHRYVLKFSDVLRKK
JGI20132J14458_1022298	JGI20132J14458_10222981	F021443	MKYLLNDEKLTFNFGFFNVTCSNYDYDCSYYQINGILPFAVINLALEIAKQQKRKSIISKKRKPIIHLLNYIDILNFNFNSHKFEITLPLRNDYNRQLTRNLYLYRRSHHRRYYEDYYGDSIKVIESKNLCIIRLEYSFASIIQPKNSSLATVLMHILEKDEIDTIDASGIIYYCVFLM*
JGI20132J14458_1024848	JGI20132J14458_10248482	F021443	MKYLLNDEKLFFTFSTPYVTYYSYSCNYYQNDGILSFAVMDLALKIIKQQKRKSIILKKRKPIIHLLNYIDTLNFNFNSRKFKITFSLKNKYDVQLMHNLHLYRNSYRRGYYEDSYKDSLVVIERENLCIISLEDEYPMRIQPKNLNLVAMLMHILDKERLI*
JGI20132J14458_1027209	JGI20132J14458_10272092	F073601	LGVSLALGRAMLQAKATCLVMVLPAKRREGQRMFWLLHIAWLCSVKIMACGRIIRTLPVEKIALAGMGVL
JGI20132J14458_1027336	JGI20132J14458_10273362	F063403	MEQTFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPSVITAFRLPAEDDDGNLVQAIYNAEPLPDIPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMPGDQ*
JGI20132J14458_1027962	JGI20132J14458_10279621	F043237	DREKVKRIEFQGFVFYLCRLPSKKEVVSYCLPRVEGPFRVYCLSSKPLEFPNAPLKLYYDEKTQRLRLLAQRSFINDCLNAIEKASEVKYPSPKLYLAHINRVLHQLYAILAHTYNDKERLRAIKRKVKHWVVEALKNQYGLKPKDAMTDYHRYVLKFSDVLRKKRQKAHKR*
JGI20132J14458_1028642	JGI20132J14458_10286421	F021443	MKCLLNNAKLTFMFKSSYVACYNYGYGYYQNNGILPFAVMDLALKIIKQQKRKSIILKKRKPIIHLLNYVDTLNSNFNSNKFDIILSLKNNYKTQLIYNLYSYRNSHLRRYYEGFYEDSLKVIERENLCIIRLEYDYAYSIQPKNLNLAVMLMHILQKEKIDMMIDASGIIFYCVFLM*
JGI20132J14458_1035860	JGI20132J14458_10358601	F021443	MKCLLNNEKLTFVFRPSYVRHYNFGYGYYQINGILSFAVMDLAFKIIKQQKRKSIILKKRKPIIHLLNYVDTLNFNFNSKKFDITFSLKNKYETQLIYNLFLYRTLYRRRYYKDFYKDSLKVIEHENLCIIRLEHDYANSIQPKNLNLAAMLMYILEKEEIDMIDADGIIFY
JGI20132J14458_1037469	JGI20132J14458_10374691	F021443	KQSKFFFMKCLLNNEKLTFEFESRYVKCNNYGYNCGYYQINGILPFAVMNLAFKIVKQQKRKSIILKKRKPIIHLLNYIDILNFNFNSHKFEITLPLKNDYNGRLARNLYLYRRSHYRRCYEDFYGDNLKVIERENLCIIRLEYDYANRIQPKNLSLATVLMHILEKEEIDMINASGIIFYCVFLM*
JGI20132J14458_1039681	JGI20132J14458_10396811	F021443	KQSKFFFMKCLLNNEKLTFEFESRYVKCNNYGYNCGYYQINGILPFAVMNLAFKIVKQQKRKSIILKKRKPIIHLLNYIDILNFNFNSHKFEITLPLKNDYNRQLTRNLYLYRSSLSRDSLEVIERENLCVIRLEYDYATRIQPKNLSLATVLMYILEKEEIDTIDASGIIFYCVFLM*
JGI20132J14458_1040338	JGI20132J14458_10403381	F043237	MDLXKTAXYIAQLSRHGYKYAIVGKLVRYDREKVKRIEFQGFVFYLCRLPSKKEIVSYCLPRSEGPFRVYCLSSKPLEFPNAPLKLHYDEKTQRLRLLAQRSFINDCLNAIERASSLTYPSPKLYIAAVNKALRQLYSVLAYTYNDRERVRAIRKKVKHWVIEAL
JGI20132J14458_1042705	JGI20132J14458_10427051	F021443	MKCLLNSEKLTLVFRPSYVTNYNFGYGYYQINGILSFAAMNLAFKIIKQQKRKSIILKKRKPIIHLLNYIDTLNFNSNKFDITFSLKNKYETELIYNLFLYRTLYRRRYYKDFYKDSLKVIEHENLCIIRLEHDYANSIQPKNLNLAAMLMYILEKEEIDMIDADG
JGI20132J14458_1043355	JGI20132J14458_10433551	F021443	MKYLLNDEKLTFEFRACYVTCNNYDYNCSYYQINGILPFAVIDLVLEIAKQQKRKSIISKKRKPIIHLLNYIDILNFNFSNDKFGITFCSNNNYNAELILNLYLYRNSHQRRYYADLYGDNPKVIERENLCIIRLEYDYVNRIQPKNSSLATVLMYILKKEEIDTIDAS
JGI20132J14458_1045844	JGI20132J14458_10458441	F063403	TLTKEAMLIMEQTFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPSVITAFRLPAEDDDGNFVQAIYNAEPLPDIPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMPG
JGI20132J14458_1052426	JGI20132J14458_10524261	F038745	PLCLGGTPCDFAEAVERLIRRAASAREAEELLEAXNGRVRLEELGLPXPALEALAEELGPEPPWLDALAASFFRLYLGLGKRRRVDGRDLALALCLWAQKKRREDPRNPLWRAAELEPDRLYTEEEAREALNIEERLFRRLWRRALAFHRGEKAYGFQLILAALSLM