3300001330: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-5cm)- 6 month illumina

Overview

Basic Information

• IMG/M Taxon OID: 3300001330
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0083722 | Gp0054898 | Ga0012391
• Sample Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-5cm)- 6 month illumina
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Tennessee
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45272243
• Sequencing Scaffolds: 27
• Novel Protein Genes: 29
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_66_12	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → active permafrost layer → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002700	Metagenome / Metatranscriptome	536	Y
F004019	Metagenome / Metatranscriptome	457	Y
F004400	Metagenome / Metatranscriptome	440	Y
F005040	Metagenome / Metatranscriptome	414	Y
F007272	Metagenome / Metatranscriptome	354	Y
F011345	Metagenome / Metatranscriptome	292	Y
F019257	Metagenome / Metatranscriptome	231	Y
F020989	Metagenome	221	Y
F021621	Metagenome / Metatranscriptome	218	Y
F023390	Metagenome / Metatranscriptome	210	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
A305W6_1000188	Not Available	517
A305W6_1000902	All Organisms → cellular organisms → Bacteria	1921
A305W6_1002056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2838
A305W6_1002199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2185
A305W6_1002457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	644
A305W6_1002750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1916
A305W6_1005201	Not Available	909
A305W6_1009826	Not Available	1171
A305W6_1010857	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	714
A305W6_1012158	All Organisms → cellular organisms → Bacteria	585

Sequences

Scaffold ID	Protein ID	Family	Sequence
A305W6_1000188	A305W6_10001882	F101767	PASHLVVSSETDEQRVQRIETSAEGLGLRFVFYANTGHFILREGGKPWGYVVSSRDVSEALDEAESQLEAERDRRTAKPRRAG*
A305W6_1000902	A305W6_10009021	F031391	AWGSSSAAFGDDQEQGGGEQYIELIGSQLWAAGMINLGRFRRVSDFVNIVQGYFVMHDVVVLTRSGEATRLTLPELRVLPDDIAVVGQLGDDKPAQTSETGTYIEKMAQRLVVLTRSHIIDGDVFIHGDGSIMSFVDATDPKFIPMSDVRVRWVSDRKLAARYPFALLQRAQILGVATEGIKLGGAESTARRAEMLKAQVRASAGSPDPLDVDLGPGVDAAAASPGDASDEV*
A305W6_1002056	A305W6_10020563	F051215	VALDRAKDSASGSYGTPRWVLVASLIGLVIAALGVTVLIDPHGGENLLAAIYERLGNAAGADALRNGQGDQFYAKLLLAAIALLVGVGGIWL
A305W6_1002199	A305W6_10021992	F041156	VGTDFRNLAVVLTRTTAMLLLAVLLILVILPAALAASSR*
A305W6_1002457	A305W6_10024571	F072634	LVAEQPDITLAELKGLLAKEKVTVGQSSIFRFLYHLNLRFKKKSAGRRAGPTGRRRRT*
A305W6_1002750	A305W6_10027504	F020989	MGLFDQPDRRPVRVAVTSDGRRVQLPVEQPEVPVLSLIRSILVGIESLVLLITGARREHGGTRKDDRS*
A305W6_1004525	A305W6_10045255	F093675	MAPFIAIVLSIGIMAAFGIAGAIWGTDSRPSYGDDHAR*
A305W6_1005201	A305W6_10052013	F019257	NMDTGPQPIADKAEADQVRQQAKAVYIKAIISAAILTALALIQ*
A305W6_1009826	A305W6_10098261	F085674	VTGEALLLGIATIAVAVAGFTAVTSTLVPPGGAWSPAMRIRQRAIVSTSFNVVFESLAPQVIFAGTGDTVASFRIASAGVAIYATGIVIWRARQMLRAGGPRTPVALILFVVGPLATLLFWANALIFASLAVFALALCLQLSIAVVSFYSLVSA
A305W6_1010857	A305W6_10108571	F092504	GVRNLASGGIVAKGPGGGGCDCDEDFNHARWFPPDSFEIAVAHTNTKGGWERVSGKASARRIHVDSLTDEPDWH*
A305W6_1012158	A305W6_10121582	F050034	MNKPENRVDKIVSDLLRGRRLKLRGGDAEEKAAITAAARLIAARQGTQRMNPAFRKRLEKALEAAPDEH
A305W6_1022057	A305W6_10220572	F011345	MRRRSRHQLVLDLDRGGRTLPPPTAPEGLLTALADLLLEALGKENKAMPVEREVCDAFQDHA*
A305W6_1022157	A305W6_10221572	F004019	MTDPATPAQPAPEVLPHVDLGMSITIATTITVISAILVAGATYEVIRGTLSSGMTRLLAVVSLLSLVAMFYGLIELALAVIATTAERRRQSRVVSERRQGDRARKPTPH*
A305W6_1032975	A305W6_10329752	F089564	MWVDAERLVLLRFIQRTKSGERTTISDSRVQNYKEIQGFLVPTEFLVLRNGRPVWREEYANVRINEELPDGIFDQARWKDIPIPQ*
A305W6_1039562	A305W6_10395621	F004400	MIPNSSFWRNLVPDDTGNLKKGNFMQALDSIRAEAERLMARRDLPPEVKAGLDRIIGLT
A305W6_1043393	A305W6_10433932	F072578	AQHQWQLGYAWLEIGQLVHVIFEGYPPGTFPPTCEGSVPCFGGEEPKSETIAGHVVHWYDHNHASHSGHIAAVFTWHGDTYAVSIHVASPVSTKVIAKRDLRHIILSSSLLKPE*
A305W6_1061733	A305W6_10617333	F002700	EEIPATEILILYDPEGEASLAILFFDTEEDYRRGDAALNAMPADDTPGSRSSVTKYDVAVRMTG*
A305W6_1062808	A305W6_10628081	F071335	MTAHKSGNPEPVVSVAKRILSTRAEEVAPYAQLYPLLLAEMDEIMDEWNRNTDELPWSALEAADRQNNLAGVITRVIDCAMSPAARDIRVTALIDAACNHGEARRKQGLDVQSLFTEYFVVRTATWRQLRTLAEGQTAYNAIFVIDGLLSIASRGTVLGYHRAEMEANGLWSEHRKELEKSVRS*
A305W6_1075243	A305W6_10752432	F057710	MAKKDDRPIDVGLAALSGNDEAAAIAFWKKRFELIAAIPSDIARVGAMTPQLRELTRMASEPERERLTRARIVAFAQLPTDVRQKITDARKAAWDIDKGVLEKDQALVDKILPTVDASVRSAYPS*
A305W6_1080129	A305W6_10801291	F021621	VWICLTVGLLDTVNAIIQSMRFSVFTYPLGLNWVIVTAYVPALLVSSVLIFIHLRRPAYSAT*
A305W6_1081302	A305W6_10813022	F054242	MERADHFPEAFARHLAEQQSRMRDADALVYYAHSRTGLLARFLQRMADRVDPTGEARRTQR*
A305W6_1084269	A305W6_10842691	F093402	SNSVWTTDNQLQTQIRNGAAKVGANAVIVNPVTQSKSTVKVLGEAIGTSSATQKATALAIYMPRDAARVRQACGTT*
A305W6_1085577	A305W6_10855771	F066861	DLSGDKITLDGGATIFTSKASQLASDTTAIPPGSLRMSLEDLKAIMPNLSAGMKVYFY*
A305W6_1097228	A305W6_10972282	F094581	ISHLGAGVSADVAEVADATGLSREHAERMLDILWRRRLVIRHDNGYVAVGSATAAVGPMRVDA*
A305W6_1101646	A305W6_11016462	F080388	MPDISLPEIHLPDVKLPEGLRDMNRQDIQNAIGDARARMPKRIEMPDIDLSKMELPKALEGRLPKSVEDRLPMKRRSNPILPLAALFAVGSMIAAAWWLITSPTASTRVRETVDRVRYKLTGRPTDVVLYDDDGNLTSLLPDPNQNRASDESH
A305W6_1112417	A305W6_11124171	F005040	MAVKVFIKPDRRYYQDREGVFRPIENLSITASTPTYPAVLHKTRRTMILADDRSHAVVALDRELVVSRNAELSAVLIAYQEPTPATWEALTRHMEAEDSTAELAREVKSKASIERKRKATEAR*
A305W6_1126565	A305W6_11265651	F007272	DWQKLATRIGAPIYCPGWMPDPLDGRIGSRWNNIFAVDRDRSYLMSWVWQETGPGTAGGELHVNLRGYPGRSRIPTXXXXRLTASGNSRSVKLPCFADPNGHRRAAGIEATLYTVNQDADQWHVLYAWRRGGSLYTLSEHVAPPLTYTKVVANLDRMLRSLVLVRPCLLYTSPSPRD*
A305W6_1128499	A305W6_11284991	F023390	GYILAGVTTTVVAVYATEPLLFIWAFGSIAAAVMSRSLERTLFRPAFVDDADEFLAGQEAVLKKHGLMAVLKAAFHYVTGSRLVLALILLALALQIASRVGDYLVAVVFVQATHNNLQALTILIGNAWLASYVVQLVVSLFVTPLVLSKLGIKNAIMALPIFTLIGFTAVAIAPVLSTAL
A305W6_1181333	A305W6_11813331	F038277	ADGEYTPAKAKAGTRFLGVCPCLGGGALGGDVKASALAARLVYSFPLGNMPSFHIGAXXXXXXXGFGGIALRIDGLVNYLPSNGGKFDFGAQAGLQFSPDIRSMMGGGTMGSGPTMWAPYVWWDQLDAPLPGTVELGGFAQWTFFDKNAGIDNLAIAKDGLGYGGRLGVFLSDPRFELEGDGYY