NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001108

3300001108: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3



Overview

Basic Information
IMG/M Taxon OID3300001108 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0071004 | Gp0055319 | Ga0002998
Sample NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size25098718
Sequencing Scaffolds43
Novel Protein Genes47
Associated Families47

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi11
Not Available16
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Multiple Locations In Canada And Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biomesolid layerforest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000083Metagenome / Metatranscriptome2471Y
F000192Metagenome / Metatranscriptome1666Y
F000708Metagenome / Metatranscriptome926Y
F001495Metagenome / Metatranscriptome683Y
F002154Metagenome / Metatranscriptome589Y
F005494Metagenome / Metatranscriptome399Y
F006080Metagenome / Metatranscriptome382Y
F007447Metagenome / Metatranscriptome351Y
F008141Metagenome / Metatranscriptome338Y
F008323Metagenome / Metatranscriptome335Y
F009027Metagenome / Metatranscriptome324N
F011034Metagenome / Metatranscriptome296Y
F012293Metagenome / Metatranscriptome282Y
F015950Metagenome / Metatranscriptome251Y
F024353Metagenome / Metatranscriptome206Y
F025163Metagenome / Metatranscriptome203Y
F025548Metagenome / Metatranscriptome201Y
F026212Metagenome / Metatranscriptome198Y
F029247Metagenome189N
F035030Metagenome / Metatranscriptome173Y
F036879Metagenome169Y
F037452Metagenome / Metatranscriptome168Y
F037974Metagenome / Metatranscriptome167N
F041383Metagenome / Metatranscriptome160Y
F041397Metagenome / Metatranscriptome160Y
F041945Metagenome / Metatranscriptome159Y
F042049Metagenome / Metatranscriptome159N
F044171Metagenome155Y
F047778Metagenome / Metatranscriptome149Y
F049115Metagenome / Metatranscriptome147Y
F052154Metagenome / Metatranscriptome143N
F055260Metagenome / Metatranscriptome139Y
F055301Metagenome / Metatranscriptome139Y
F055902Metagenome / Metatranscriptome138Y
F057341Metagenome / Metatranscriptome136Y
F061214Metagenome / Metatranscriptome132Y
F061248Metagenome / Metatranscriptome132Y
F063920Metagenome / Metatranscriptome129Y
F065994Metagenome / Metatranscriptome127Y
F069160Metagenome / Metatranscriptome124N
F072646Metagenome / Metatranscriptome121Y
F072684Metagenome / Metatranscriptome121N
F078889Metagenome / Metatranscriptome116Y
F079699Metagenome / Metatranscriptome115Y
F084146Metagenome / Metatranscriptome112Y
F084510Metagenome / Metatranscriptome112N
F097929Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12647J13326_100003All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5048Open in IMG/M
JGI12647J13326_100079All Organisms → cellular organisms → Bacteria2222Open in IMG/M
JGI12647J13326_100104All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1957Open in IMG/M
JGI12647J13326_100161All Organisms → cellular organisms → Bacteria1767Open in IMG/M
JGI12647J13326_100519All Organisms → cellular organisms → Bacteria1248Open in IMG/M
JGI12647J13326_100761All Organisms → cellular organisms → Bacteria1072Open in IMG/M
JGI12647J13326_100766All Organisms → cellular organisms → Bacteria1069Open in IMG/M
JGI12647J13326_100813All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1041Open in IMG/M
JGI12647J13326_100856All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1022Open in IMG/M
JGI12647J13326_100890All Organisms → cellular organisms → Bacteria1002Open in IMG/M
JGI12647J13326_101189All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi1888Open in IMG/M
JGI12647J13326_101286Not Available859Open in IMG/M
JGI12647J13326_101405Not Available829Open in IMG/M
JGI12647J13326_101549All Organisms → cellular organisms → Bacteria → Proteobacteria801Open in IMG/M
JGI12647J13326_101810All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha754Open in IMG/M
JGI12647J13326_101916All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium737Open in IMG/M
JGI12647J13326_102202All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium704Open in IMG/M
JGI12647J13326_102254Not Available698Open in IMG/M
JGI12647J13326_102274Not Available695Open in IMG/M
JGI12647J13326_102374All Organisms → cellular organisms → Eukaryota → Opisthokonta686Open in IMG/M
JGI12647J13326_102445All Organisms → cellular organisms → Bacteria → Proteobacteria680Open in IMG/M
JGI12647J13326_102545Not Available670Open in IMG/M
JGI12647J13326_102565Not Available668Open in IMG/M
JGI12647J13326_102605All Organisms → cellular organisms → Bacteria666Open in IMG/M
JGI12647J13326_102664All Organisms → cellular organisms → Bacteria → Acidobacteria661Open in IMG/M
JGI12647J13326_103168Not Available622Open in IMG/M
JGI12647J13326_103203All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium620Open in IMG/M
JGI12647J13326_103492All Organisms → cellular organisms → Bacteria603Open in IMG/M
JGI12647J13326_103597Not Available598Open in IMG/M
JGI12647J13326_103817Not Available587Open in IMG/M
JGI12647J13326_103900Not Available583Open in IMG/M
JGI12647J13326_104150All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium571Open in IMG/M
JGI12647J13326_104163All Organisms → cellular organisms → Bacteria571Open in IMG/M
JGI12647J13326_104172All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium570Open in IMG/M
JGI12647J13326_104639Not Available552Open in IMG/M
JGI12647J13326_104745Not Available548Open in IMG/M
JGI12647J13326_105285Not Available530Open in IMG/M
JGI12647J13326_105439Not Available526Open in IMG/M
JGI12647J13326_105660All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria519Open in IMG/M
JGI12647J13326_105677Not Available518Open in IMG/M
JGI12647J13326_105698All Organisms → cellular organisms → Bacteria518Open in IMG/M
JGI12647J13326_105810All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium514Open in IMG/M
JGI12647J13326_105903Not Available511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12647J13326_100003JGI12647J13326_1000032F011034MEARLPLARRTELACRHIALTAPRQLDLVLDDVRLRAVTPAERQAVLRAMARLLLEAGGVATREVSDDNA*
JGI12647J13326_100079JGI12647J13326_1000793F035030MKPSSGDKQLGMLSPLKSAAMQSGQTKNPSQDEVGLDVSHHIHLSLEGRGKYFFLDILFHRMSAIGIFANNTLLSLELVRALVRSNE
JGI12647J13326_100104JGI12647J13326_1001041F037452MGSSILSEVDNTLDLRMGLQTRQRFPVSWLPLSRLLPPRSGLERSDFVL
JGI12647J13326_100161JGI12647J13326_1001611F055301AKDQSIKKTMMNSIRPDALASLLLKGEAKNGNRPVKGERTFRDLSLESTVSSRIGMHGVVGDRMVRSWSDMNQGSRSGEERRSWPLGGPEEARPEGDRASVVARKRGNTRGAKGGRKVEA
JGI12647J13326_100519JGI12647J13326_1005191F041945TIRQLHKEVEYLKRQREILKKAMSIVGEEPNPGMR*
JGI12647J13326_100761JGI12647J13326_1007611F025163LALAFLEPSPPARPSPSQKLDAETRAEALNILARIIAQACETTQHTEATDE*
JGI12647J13326_100766JGI12647J13326_1007661F025548GGVKQIVDVISSFQCAGINRHEAEDERALRERSSDPLGLESCVGYREVLSEA*
JGI12647J13326_100813JGI12647J13326_1008131F002154DRLSAERCLGGPSRSCHGEGNRQRSGPERLLDLSGVAGGGTFPKKNAEQERPYLAAQSGKDRGYKAGRLKARGAGRESEGLVVPGKACKTTRWREGVLL*
JGI12647J13326_100856JGI12647J13326_1008562F055902MKLIPKSVVPKHASVVLSLLVCFAAVSPSASAKDRAVKPAPQPASVIAHLPLPGGPVNELVLQQRGSKQYLYVEQDSSEGVAIVDVTTPGQPNIIKREAWPNASSTGKLQMVGSRLALAAAPETATAETVSRTDTLKVLDLNDPANPRTILSLSGVTSTLADDARNLVYIANNDGLWILKVQP
JGI12647J13326_100890JGI12647J13326_1008901F063920MNASPLGITSKESQSRRGDRSSAKPIVRRALVGLLCGAASSIFLCSAVRSVGLGLFLGSLLGIAQVFAFFDLERGSAIDRAMTCAALGLPCWATINLILLPMVAGQEPQWTAEDMRSLFPALIGWLLFFLFLGALSQAARR
JGI12647J13326_101189JGI12647J13326_1011891F015950REAVQIGSLLRENRMSAGVARTVPEGCHLGTPIGDACRRLMQSKRDHKAKLYFGGARCGSACVYAMVGASTRHVDPGATLRIHSGVGRELDRTENFLRRYVTVMGVDPDLVDAAAKIPSRSFRGLSRGEMERFGIETRGVHETPWFVYNGPAGEFILLKSVTYPTEETGDEYRTRTVGLACSSLHPNIRVTYHSGLTGKQGRTPPRIRAKIGDSLIDLTTLQVDSVEKSFTLEPRQLQRAIATGSFEITEIFDQSITKKPSRAVSFSTVGLSTNSVALEAKCRSKSDPAQ*
JGI12647J13326_101286JGI12647J13326_1012861F052154MNAYDGCHVTIQVPVDFGNEKEKELRQTFDQELPGVWLTVHGRESVTKPRISELSIDEFAYVRGAKATEEWKNAAEKAELKNDAFPVVDWAASRTLRQFLQGHK*
JGI12647J13326_101405JGI12647J13326_1014051F001495KEKKKLTPPGIPMNNSLDLLRQNYCRPATVTGKRDHYLLPLEKECNEGMALLAQAPVPLLHLQEFDPSGLEQTYRDEAIGAELPVFAVFDLEGSHQVAYEIIMDSVPGTARRHSLPAYIPIQKTQDFVRKINEPRMKGERAAIRTSAILGLFPVLAYLFSYTVELTGPSVLFVLVGGWILGAFLTYLLGEMLLNRICPWKKLVITAEFDGILPKETREKARAAKDHFDNLYLIVDQQYHWKSALLPDPRPRALDPLLIGELKQGNRYKFFLIHQFD
JGI12647J13326_101549JGI12647J13326_1015491F061248MRTLSSFNHAGPDEVPVAISLRKTALKGSVGNDPIDRRPSLGGRPGWVIPHGTMPV*
JGI12647J13326_101750JGI12647J13326_1017501F000083MSTLDEITQEKQRVSEALARIDAQRQKLAGQLGELEATERVLARYSTGTKRTVSAKSPPSPTKAVAPAQRQRGRRPATTAKPGDGRRTSATLSDQVLALATGRTQHEIASACKGARPNHVGAAISRHKRAGRIEERDGKLYASQ
JGI12647J13326_101810JGI12647J13326_1018101F079699NAVTGCAVKGGGPQRELNPPGNWFAPPGSNRSSGGGNEAAEAFDVEGRIGDSASVQAVT*
JGI12647J13326_101916JGI12647J13326_1019161F041397GVTKSILSKLFLRFIFCTEMNNNRARETNRRANVRAPSEKSTFSKQLAGFWRDLEDNQCWKYNELSLVQLLEKLKLAERLADKDELARAEFFWRRRPRLLSATGYMFWIIVALGLPAWLFVFPAIGAPLLIVSAVVVNAGIVRSVRWRRQYELSIDRLIRHFGRSAHSTHSV*
JGI12647J13326_102202JGI12647J13326_1022021F049115LQCILAAKREQEMANDGLINLVAWCKRERESLQMQREMLQSGKFRIFKNEGSGQVDTSSDSIERITANITELDAILADYEARGSRA*
JGI12647J13326_102254JGI12647J13326_1022542F084510PLVDPDDIYFPEAEDIGPHAIAFAQVMFAHSEFEREVCSLQGVITNDLSFGERRSNQWRPRERPERMAKLIKTHLGDDLQEAEPIVKLLSDAIGPCDQRNFLAHGEWRSFNTRTLTITIRSRTRWNDGQPKHVEYTAQEIEALVGEFXRLEIELFKLRHRIEARHAASPPPQPTVILNKLKNRSGAGHQR*
JGI12647J13326_102274JGI12647J13326_1022741F037974MPNTNHTTDILRVKQIVIDEEGNVAKRFPRIDAEGQLKNTLLFAIHPEICVLSMQVPGGLLDAYEQARISQVLM
JGI12647J13326_102374JGI12647J13326_1023741F061214ARCRLVNRFAKLTKIILALKETPINGGLTYEGPKVAEYPGR*
JGI12647J13326_102445JGI12647J13326_1024453F065994MPVERRGQVTDVGSEPTGNRRSSNSRREAAAFVRWHEPDDARVSSPD
JGI12647J13326_102545JGI12647J13326_1025452F097929ELSTGLMQQIKIPGLRFGRMFSWAIASGELGGLSADFYRFANSIRSELSAISLEKWKVAA
JGI12647J13326_102565JGI12647J13326_1025651F041383MAATKESRQISTETQKWSFSSNGQPLSLEDFLENYRKQGVFYEGKEQWLKGVTKVSWENFFLVCTEELDDISQRAAKMLILYCLEIVENVVSRMRGP
JGI12647J13326_102565JGI12647J13326_1025652F042049VRKYNKVFGTLPLPDREDQLGFGDDLIEAYYKLTKNERSIVVSIVDRLKPGVTAFEFDDFGLQTAALKLLTYHRLVLHNGDKQNSVLYARWLSAITMVEKKM
JGI12647J13326_102605JGI12647J13326_1026051F009027HPLFGQPLEVSPSGLIRRIGWIRVVLPDGRHRWVPQKATDLNVSACEARPNRDLPLVSVRTLIPLAEYVRARLSALGERFDETSGHTADPAVRAGIAGSTADLGAEIVADDDADNTTTAGEAGGTATPVNAGRSRRRRFDRGASR*
JGI12647J13326_102664JGI12647J13326_1026642F047778VAREVNQLLARIFAQRRKDGRTDLEAVESALRTALHQAGAAALSELLQFEIPEA
JGI12647J13326_103168JGI12647J13326_1031681F012293ETKVRIFLAKMPVSISHLILFLRLFICRTDVRIRSMNAKILLALVLSTPLFVSPAEAIVYTVRTASGPVTYSLEVPPGTPVGSSIKPDPQVAYSANFPMTAGSAEVAAVGWAGGLEDKDKFDNYPNSLTILGGKVPGGFYDATFIRVDHVERVNGPVPYYLVQMTGNVSGSAQTFYAAVLDDGNLVRPVPVSRYAYHQGRHSREKWG
JGI12647J13326_103203JGI12647J13326_1032031F006080MPHALLLSPDDQAVSAITGVLEEMSVTCERPLDGVSAAQKLNSQTFDLVLVDCENLPAAKLIFDVCRRGKNGNNPVPIAIVDGRAGLPTAFRLGAELILTKPVAKDQARTT
JGI12647J13326_103492JGI12647J13326_1034922F000708MTKPDSTFARIAAQFAGHDVEYSRGAYMIIDRRTASPIARLRPFPDTDRFELFYWSNVKGRWTTFGNLGRMKLMIESAHEIVENDPMFRIPRLR*
JGI12647J13326_103597JGI12647J13326_1035971F069160MAQFEHTRRWIAIACGFVLFSGCQKSPAISDEELTHRLVGTWITDESGGNYRFYGENSFHRDGMHSADEVMHADGGTTKWTFSGMWDVRGGKLLASGEVFRSDSAAVETYQVEEKIESLTSDELVLVSANGTRL
JGI12647J13326_103817JGI12647J13326_1038171F072684VNASEQGPTEFNWDHEPQGFFIRGENTEVSLLFDSSARSWRLRICKKKTSLGEPMTYEIVFKERYCPTADQAIALANEILNVELRE*
JGI12647J13326_103900JGI12647J13326_1039001F008141IGPAARLVRQVQIAMLVTIALYAVAGERLAGRLAHDPANALFHALSFISISIVGATVVIRRTLVLPSEGLLKERSDDSVAVARWRTGYLFLYALCELLGVFGLILRMSGFTLGNVWGFYLGGVVLLLLYSPRAPRAEFR*
JGI12647J13326_104150JGI12647J13326_1041501F024353NLIDVMIVPEHNPNGEPGGPFNIFDISWVDPVNRLFMVTDRIGLDVPVFSSVTNIALFAVGGDNSVAEAGNNASVCDASIPPTTTAQGNFTRFGCKNPPFRLPGFFGPNGHFGGWMGGQCCASRANNLNPLTGPNGVEVSADGNFMFVGSGSSSMAIFDMRPTLANNATAPPVIANILTGTSPDYDGIPN
JGI12647J13326_104163JGI12647J13326_1041632F007447PSVLQGEDSPHAKSLFAFARNVVARVEEIKASSSESVIQIQ*
JGI12647J13326_104172JGI12647J13326_1041721F005494RLDPDLWRAEYPGGGSGMFREADIRAYDPERDANIAEQPRRAKATTPQNSSRSRYAIDPETITAGRLPQRAPVVTSAANPHYQKHFDRLFDLAKAGDWDGVRNYEVKGSNSYSKMVARYRQDLLAVHAASEAAP*
JGI12647J13326_104239JGI12647J13326_1042392F000192MAANQVVLYFDTQQDALLFALAASSIMSAEGPVHSNKAAVRVAEEICKASRIMTEGVLNIT*
JGI12647J13326_104639JGI12647J13326_1046392F057341KVLCAAMVGCLVLPLGGLLFPYLDIPALAFNAIEAVVSATVGFSIAELLA*
JGI12647J13326_104745JGI12647J13326_1047451F072646MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGPKIVEHEISEMIEYLEESKTKETTGXRXARLVIN*
JGI12647J13326_105285JGI12647J13326_1052851F029247MKADSALVMSFFKNEVPAGSVRINLKWPDKHEVTDFKLGQLGEMVSCETETDQTGWVIVKRRGNISVGDKVPLL*
JGI12647J13326_105439JGI12647J13326_1054391F008323NIHVGDLPRRAVGEVVVLNVTPTSSSAMVVFALEDVYAGDSVELDEQQ*
JGI12647J13326_105660JGI12647J13326_1056601F078889LGATPVQYQWVDCERAFIARRYDRIAGFMALFDWLFWFPPHLRDLAAER
JGI12647J13326_105677JGI12647J13326_1056771F055260ILQQFAAISKGSGLKSDMDVEPTAKGSTLIGMPGQLSPGVKVLSVTDNAPDGGNTYKQVPGAGSSCPEGPLDIWYCENCNPGVTELQFHLSGHVKASINSFLEVSNLASSSILDGSGAQVSDGSATSAGLEVGPRIRTTATDFXVARFFSASPYPTGVTPAAWTFKPSYVYV
JGI12647J13326_105698JGI12647J13326_1056982F026212RMDDAFNIYSAEAEKLSVLLAERRDALSWSLYHNLLKQRTAETVAYEKYRSIKDQLFGLINPPAAPDRPESSVN*
JGI12647J13326_105722JGI12647J13326_1057221F084146PAVIAGIVPTCVFQFDLIADQLSTGDLAEWFTPHPAKRPWYRILNSNSNFGSNDPLGPSPLLAIQAHGNLHVGRFGLKKMSATQVATQVEVDRGKITLTALRGQLLQGTHQGNWIVDVSNHDVSNHDASNQTVRYHGTGTLQDISLAQVGTLMNDDWISGTATGNFDLDGSG
JGI12647J13326_105810JGI12647J13326_1058101F036879LTFCIADEGNPQQPGIYLVMAMGSEQAGLTGFKGSIVRKVAVDRSAASLQKSLTAIKTALENNQLGGGI*
JGI12647J13326_105903JGI12647J13326_1059031F044171VIRFHLFLLFANALGNDSSVIEKSFNFGVGIPLSALLLILALRSSGENRSAHLGFAVCALTFTLGATVEQIAICLGQSTSSLTVVLAGNLAFCAAAAWPLTILGLWAQGPYTSIWRQQLGRAVLALAGLAAVL

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