3300000961: Marine microbial communities from the Deep Pacific Ocean - MP1649

Overview

Basic Information

• IMG/M Taxon OID: 3300000961
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054788 | Ga0011733
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP1649
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53520525
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North of Tokelau, South Pacific Ocean
• Coordinates
  • Lat. (^o): -5.74
  • Long. (^o): -170.77
  • Alt. (m): N/A
  • Depth (m): 4017.73

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012125	Metagenome	283	Y
F041257	Metagenome / Metatranscriptome	160	N
F071320	Metagenome / Metatranscriptome	122	N
F080249	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12026J13078_1000105	Not Available	7335
JGI12026J13078_1003884	Not Available	1564
JGI12026J13078_1005427	Not Available	1296

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12026J13078_1000105	JGI12026J13078_100010510	F012125	MSDTRYSVMHPDGGKYSFFSAGKPKNLPRFYFLVLAGIFLMIFMFLWFD*
JGI12026J13078_1003884	JGI12026J13078_10038843	F071320	VISWEATVSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSSCSRNNPDRLYCSS
JGI12026J13078_1005427	JGI12026J13078_10054271	F041257	MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSPSD
JGI12026J13078_1012278	JGI12026J13078_10122782	F080249	MADNKSKRGKPDSYLISFKERYEVDYAVKQLQKQFPAKTKTEVKKALTKAASEIDPSRGRERVMKGARKLIKK*