3300000898: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 58

Overview

Basic Information

• IMG/M Taxon OID: 3300000898
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054553 | Ga0001981
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 58
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7475555
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005929	Metagenome / Metatranscriptome	386	Y
F012657	Metagenome	278	Y
F031584	Metagenome / Metatranscriptome	182	Y
F057789	Metagenome	135	N
F076466	Metagenome	118	Y
F091102	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12368J12877_100237	All Organisms → cellular organisms → Bacteria	1386
JGI12368J12877_100303	Not Available	1287
JGI12368J12877_100359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1206
JGI12368J12877_101318	Not Available	696
JGI12368J12877_102473	Not Available	533
JGI12368J12877_102761	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12368J12877_100237	JGI12368J12877_1002372	F031584	SALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12368J12877_100303	JGI12368J12877_1003034	F057789	MSETALQFTGTDLRGLLDVLLEALKVIRRTGRRPTITVNGKLYASHDLRKVAALLPDEELQPHHQALVNVMFAKKQRGYRKTAYNLADRVNSWRTEEQKLAARQAAKTSALAVAEPAPFRNRGFSERTI
JGI12368J12877_100359	JGI12368J12877_1003593	F076466	MLTEATQLEMADLKDRCRNFRGESTGHEQWPADILAEKFQPAEDVDVAPDGGEVETIARANIAVCGIAIVQS
JGI12368J12877_101318	JGI12368J12877_1013181	F091102	TFFPRPGPAPRSSLESKADSDFNSVVNYTVRHLGENRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPKVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFD
JGI12368J12877_102473	JGI12368J12877_1024732	F005929	MRENMSLLSFWGLVFSLIAVTLFVVIYSYQKSKYANRNIVGDLRQRSVDVYLAAKTPEAESDSKMFRAASNEIERLRAETRVLFWLIIAMNTAVIIIFILAYQNF*
JGI12368J12877_102761	JGI12368J12877_1027611	F012657	TTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRSWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*