NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000860

3300000860: Marine microbial communities from the coastal margin of the Columbia River, USA - metatranscriptome 33 PSU, 16m



Overview

Basic Information
IMG/M Taxon OID3300000860 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0084963 | Gp0057246 | Ga0011713
Sample NameMarine microbial communities from the coastal margin of the Columbia River, USA - metatranscriptome 33 PSU, 16m
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Maryland
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size9628445
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium TMED1601
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine neritic zonesea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationColumbia River plume, coastal ocean
CoordinatesLat. (o)46.233Long. (o)-124.16Alt. (m)N/ADepth (m)16
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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