3300000677: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70

Overview

Basic Information

• IMG/M Taxon OID: 3300000677
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054558 | Ga0001993
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5647097
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012657	Metagenome	278	Y
F026495	Metagenome / Metatranscriptome	197	Y
F054241	Metagenome	140	Y
F062933	Metagenome / Metatranscriptome	130	Y
F091102	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12373J11866_100855	Not Available	745
JGI12373J11866_101372	Not Available	611
JGI12373J11866_101469	Not Available	594
JGI12373J11866_101523	Not Available	586
JGI12373J11866_102098	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12373J11866_100855	JGI12373J11866_1008551	F062933	MHLVSKIGIAIFAAAAVAAVIVDTMRPIAARRLFALVAALIAGVTAFYLVPEPLPELTRAEFMTEVRAGHVRRVEIEDQQVIIGESSTRGEFRTEFDRYKDVDLPAELRALGIEVLFSTSPPGI*
JGI12373J11866_101372	JGI12373J11866_1013721	F012657	PQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG*
JGI12373J11866_101469	JGI12373J11866_1014692	F054241	MPTENEPITAERIRKKKFVALLGQCLDCGQPVIEGQAFFRSDHGIRHALCEFDPAYAKRAREPKVKTE*
JGI12373J11866_101523	JGI12373J11866_1015231	F091102	DSDFNSVVNYTVRHLGENRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPKVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDEN
JGI12373J11866_102098	JGI12373J11866_1020981	F026495	VFGIAAASRNTRFQAARYGLTRAGLSPADRASFGWRL