NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000561

3300000561: Amended soil microbial communities from Kansas Great Prairies, USA - acetate DNA F2.1B clc assemly



Overview

Basic Information
IMG/M Taxon OID3300000561 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0051396 | Gp0054318 | Ga0011524
Sample NameAmended soil microbial communities from Kansas Great Prairies, USA - acetate DNA F2.1B clc assemly
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size890834920
Sequencing Scaffolds21
Novel Protein Genes23
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available17
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeprairiesoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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