NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000491

3300000491: Lentic microbial communities from White Lake grasslands, BC, Canada



Overview

Basic Information
IMG/M Taxon OID3300000491 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0074126 | Gp0054485 | Ga0011520
Sample NameLentic microbial communities from White Lake grasslands, BC, Canada
Sequencing StatusPermanent Draft
Sequencing CenterPennsylvania State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size13912511
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLentic Microbial Communities From White Lake Grasslands, Bc, Canada
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Microbial Communities From White Lake Grasslands, Bc, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomefreshwater lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationWhite Lake grasslands, BC, Canada
CoordinatesLat. (o)49.2833Long. (o)-119.5833Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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