Sample 3300000422

Basic Information
IMG/M Taxon OID	3300000422 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053056 \| Gp0053857 \| Ga0026669
Sample Name	Marine sediment microbial community from La Parguera, Puerto Rico - BB Mangrove A Sediment
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	71866427
Sequencing Scaffolds	53
Novel Protein Genes	59
Associated Families	54

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria	6
Not Available	24
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → Viruses → Predicted Viral	13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem Assignment (GOLD)
Name	Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → lagoon → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Bioluminescent Bay, La Paraguera, Puerto Rico
Coordinates	Lat. (^o)	17.966667	Long. (^o)	-67.0	Alt. (m)	N/A	Depth (m)	.39
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F000973	Metagenome / Metatranscriptome	817	Y
F001467	Metagenome / Metatranscriptome	689	Y
F001488	Metagenome / Metatranscriptome	686	Y
F004169	Metagenome / Metatranscriptome	450	Y
F008029	Metagenome / Metatranscriptome	340	N
F009725	Metagenome / Metatranscriptome	314	Y
F010910	Metagenome / Metatranscriptome	297	Y
F011841	Metagenome	286	Y
F012107	Metagenome / Metatranscriptome	283	Y

Scaffold	Taxonomy	Length	IMG/M Link
BB_Man_A_Liq_inBBDRAFT_1000003	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	35707	Open in IMG/M
BB_Man_A_Liq_inBBDRAFT_1000017	All Organisms → cellular organisms → Bacteria	23054	Open in IMG/M
BB_Man_A_Liq_inBBDRAFT_1000356	Not Available	7928	Open in IMG/M
BB_Man_A_Liq_inBBDRAFT_1000914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4985	Open in IMG/M
BB_Man_A_Liq_inBBDRAFT_1001021	All Organisms → Viruses → Predicted Viral	4724	Open in IMG/M
BB_Man_A_Liq_inBBDRAFT_1001125	Not Available	4459	Open in IMG/M
BB_Man_A_Liq_inBBDRAFT_1001566	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3675	Open in IMG/M
BB_Man_A_Liq_inBBDRAFT_1002046	All Organisms → Viruses → Predicted Viral	3124	Open in IMG/M
BB_Man_A_Liq_inBBDRAFT_1002296	All Organisms → Viruses → Predicted Viral	2885	Open in IMG/M
BB_Man_A_Liq_inBBDRAFT_1002660	All Organisms → Viruses → Predicted Viral	2632	Open in IMG/M

Sequences

Showing 1 to 59 of 59 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000422: Marine sediment microbial community from La Parguera, Puerto Rico - BB Mangrove A Sediment

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences

Scaffold ID	Protein ID	Family	Sequence
BB_Man_A_Liq_inBBDRAFT_1000003	BB_Man_A_Liq_inBBDRAFT_100000313	F102076	MNSARRTHQHHNARSLTTEEEYHSLKETYKLLCDLIDPKKVPAIPKPLRDRAKKCLEDYPVRRQLEQLRMTVDFFNPR*
BB_Man_A_Liq_inBBDRAFT_1000017	BB_Man_A_Liq_inBBDRAFT_10000173	F083232	MGFDPNRPYKANKTDYINIILAVALTAAVVIWALN*
BB_Man_A_Liq_inBBDRAFT_1000356	BB_Man_A_Liq_inBBDRAFT_100035611	F000973	MTDKFLEDIVYELRGIKTILGSMWHSRYKTDETDRMNPEAYADEYISTEECAKRLNISDQTIRNWIAKAKTHKDKGWVEGIHYVNVCPNFNSKPVIRIPWNELIRSFAKNKSTEIVDLREKRMYQPQNTVRL*
BB_Man_A_Liq_inBBDRAFT_1000914	BB_Man_A_Liq_inBBDRAFT_10009149	F076119	MSDINKKYLFGSFVLFLGIFVLEGVLGLFGIEESILFLIYWVLYFVWLFKGKGYIKKRST
BB_Man_A_Liq_inBBDRAFT_1001021	BB_Man_A_Liq_inBBDRAFT_100102118	F036186	VKEIHMNKTNVITFRQALNILEEQFDSTYRGIKTVNEMCSSLTDWMSWEGESPDAIYHQFETKSGPNRIVKDDHVIALALHYV*
BB_Man_A_Liq_inBBDRAFT_1001125	BB_Man_A_Liq_inBBDRAFT_10011252	F040584	MNKGGGYVVGSPKKTRQGNGKHSKPKRNRKKLRGQGK*
BB_Man_A_Liq_inBBDRAFT_1001566	BB_Man_A_Liq_inBBDRAFT_10015665	F055663	MTDFLNLKVSEKHIVCPKHGTHTHYIYSTVEGYEGHWCMLCALEMLGPSLPLVEEQIDDSL*
BB_Man_A_Liq_inBBDRAFT_1002046	BB_Man_A_Liq_inBBDRAFT_10020462	F055663	MTDFLDLKVSEKHIVCPKHGTHKHYIYSDIEGYEGHWCMLCALEMLGPSLPLAEEQIDD*
BB_Man_A_Liq_inBBDRAFT_1002296	BB_Man_A_Liq_inBBDRAFT_10022964	F082390	MYIKRVKANDTMITVNLTERQVSLLEELVGEKFNEVAQAWLPASETEDMNKLCYDTLLNLRCVRMSKEFDETYANWNKDVFLFDKKEYLRDVGLVTG*
BB_Man_A_Liq_inBBDRAFT_1002660	BB_Man_A_Liq_inBBDRAFT_10026603	F000325	MKTANGNDKLGKENCIVVSRPVGDTCPSTCAFLGNGCYAENLEKIYPGVRPAGMQNLITERGRIRSMMIMAESKGKAIRWHERGDFFINGELDHNYVDNIIWACESIIADGGKLPEMWFYTHIYDSKLSGLSKYMAVYASVHNSKDMADAKAAGFKLFAWCDSDKKIAPVRPRGKVKANAWRESLPKLVVLEDEKFVTCPEIRRGRGVVTCTPSKKSVACNLCVKGLANVLFPSH*
BB_Man_A_Liq_inBBDRAFT_1002778	BB_Man_A_Liq_inBBDRAFT_10027784	F051568	MNIFPLDDQLVMLIDRLNTAVNVCYEAPEIEDQGYAYATGYSRSAMTDVANDLSKIVEQMREEMDS*
BB_Man_A_Liq_inBBDRAFT_1002974	BB_Man_A_Liq_inBBDRAFT_10029743	F091854	MLVVKLLGESVQVNAGSGSSVPASSTYGSVGAEYVMIQHSHSSDRVVEVRTGAGVTYGSMHVTSNDPIVIHKERTDLVYSSASDVYATSIVYQG*
BB_Man_A_Liq_inBBDRAFT_1002979	BB_Man_A_Liq_inBBDRAFT_10029792	F102111	MARTYTTYYLRFSSQTEAETKFTEVNYRHTETFEGVEQTYYAVKDQIGDIDIIGDIWNDDGVYSDPDPETGEMTVITPPTKKNGYHVNIILEGALPGALTEFVVEPQNPYRVFA*
BB_Man_A_Liq_inBBDRAFT_1003426	BB_Man_A_Liq_inBBDRAFT_10034265	F039880	QFVLLWNEGRSLKDIASELEVDVSTLFRWRQKPHIQLVMSNLSQERYQDSFHKDSIIMDKVRSKVVQEMENISLKDLVWLYQTMTKHQQAKAGPFARNEQELMLQQQSQSIMGSQVEDWIQGSIEKMFNEVMFPEEE*
BB_Man_A_Liq_inBBDRAFT_1003851	BB_Man_A_Liq_inBBDRAFT_10038512	F004169	MSDEELKLVLAKYQQKAFELFNQNIVLETQVESLSTTVSSLSAEVEKLKKPKRGSKTEESFS*
BB_Man_A_Liq_inBBDRAFT_1004575	BB_Man_A_Liq_inBBDRAFT_10045752	F010910	MLTLYTIFGMFVGFEGYDNGKVYIGVYTPQTEYGYVVTKDDIYLDTIFQKGVDSQK*
BB_Man_A_Liq_inBBDRAFT_1004797	BB_Man_A_Liq_inBBDRAFT_10047974	F019256	MTVNNPGGSGSNDQDASVDINAFQQLLDKLEGSKKRQQRQKSVEGRRDIYAQGLASMMSNF*
BB_Man_A_Liq_inBBDRAFT_1004831	BB_Man_A_Liq_inBBDRAFT_10048311	F051568	MNIFPLDDQLVMLIDRLNTAVNVCYEAPDRTDQGYAYATGYSRSAMTDVANDLSAIVKQMREEMDS
BB_Man_A_Liq_inBBDRAFT_1005586	BB_Man_A_Liq_inBBDRAFT_10055861	F104613	LNLVGLKELAELLDVPYDTLKVWKNRDRLPEPFQVISGTPVWDWDESEEDFRSIQKNENSGRPKKPKISIAGGLIEIDVKGSKKDKDDNVSIRVMGKSFVDIQ
BB_Man_A_Liq_inBBDRAFT_1005857	BB_Man_A_Liq_inBBDRAFT_10058571	F035778	MNHIDKDYCPTEQYCTDRASCSTIKKTRNNLVIATALFVVVLLLYFYPQHNKLLDLHKELGGSVSLFSNPKNLNGLIPLSKGSGSFKDIGDLSKEHWKVISFRHGNCTSGFCVKALSDTRSGISKSKNKNKVIFVMLSLDNDGNLASDDQNEGVMNFSLDDKNARQVGLETGVEFLMRFA
BB_Man_A_Liq_inBBDRAFT_1005989	BB_Man_A_Liq_inBBDRAFT_10059892	F063713	FFLKFFSITLSVFFLFTSINTSANFEPTKNYYHPILKITSSTDWSNKDITQNKQMAKKGKKDSYAAYGCQLFDLGSYSDAYEWLKKAMIYANSSESKNSINKYSSNYLAVTSRLAKIYAYGVGADKNLIKSKKIIKEILPIVYAKLKNTDYLMLRAKRDQNYRQYNYFLKIMAEYRMLIAELNKINQKQISLSRL*
BB_Man_A_Liq_inBBDRAFT_1006141	BB_Man_A_Liq_inBBDRAFT_10061412	F058165	VSTIAVLIDPARMAEADAVLMMMYGSLSALVDAYFGFSRVVAIK*
BB_Man_A_Liq_inBBDRAFT_1006637	BB_Man_A_Liq_inBBDRAFT_10066373	F049659	MISTYTVAEYTSEDTSVEVTYENSEGHVHKRTINIPHLENGNIDETYFQEILEGQLRGVNNKIAVGAISFTDPNAVEESVGIAST*
BB_Man_A_Liq_inBBDRAFT_1006799	BB_Man_A_Liq_inBBDRAFT_10067992	F054924	MISLRLIRRIQTVKTVEVKIRRIPGMIISLLLLYLTAVVSIFFLKVAFFFAAIGVVFKSFSNK*
BB_Man_A_Liq_inBBDRAFT_1006799	BB_Man_A_Liq_inBBDRAFT_10067993	F008029	LNLVGLKELAELLDVPYDTLKVWKNRDRLPEPFQVISGTPVWDWDESEEDFRSIQKNENSGRPKKPKISIAGGLIEIDVKGSKKDKDDNVSIRVMGKSFVDIQTESAQSNSKSKNVSIKVLGKKVVDINTDDFIEVDKEDTDSENS*
BB_Man_A_Liq_inBBDRAFT_1008325	BB_Man_A_Liq_inBBDRAFT_10083251	F070142	MKDWNSLSVDRYYEDLNANADVAIGILDISRDIDNEFVAKRTFDKTYFYVNRMLKMNLASYVGFEKSVKTLLQKSIEQNKKYCMIACQGLLLYRGPSLVQKSVEYAKNNPQFFVVGHIMDKKSQHHYLTQGAYPGLHRQYLFVNLSKWQELGEPEFDELGIFTDRPREYRNVEFSADTIHSEYTPAWVKGAEGYSKHTITADGSNWIHLAAEKGITIDNLDNDMRECKVFLYPYNKPHILEKVWLDKRNDKLVDQLNYSQKAWIRKLGYQEEIEKDRVYAFNTERLSGEGVRTDGKNIDHLFSAAAGFKPLAILN
BB_Man_A_Liq_inBBDRAFT_1008480	BB_Man_A_Liq_inBBDRAFT_10084801	F012107	CPAAPWENTTTSADRAIDLAYSLSEEFHCDVDLRYNSNGMIFQTVSNY*
BB_Man_A_Liq_inBBDRAFT_1008588	BB_Man_A_Liq_inBBDRAFT_10085882	F011841	MTDMNYTEILKVWNSETPDDFAIFSDFYYQMFGEDFDIPYTTDSTASAFYPYD*
BB_Man_A_Liq_inBBDRAFT_1009154	BB_Man_A_Liq_inBBDRAFT_10091542	F105238	MRIFSIVSTILLMHFATGVWSAVAIQCNPNLEVSWXFDQIENKSNFFEXTDNLSSITLHLDTGFLKLPXAQNDGITLLRQQSIMKKSEDGLDLTVNYKSTNAMGIEATNVILSDPMCKKSKEAVVSIFTT
BB_Man_A_Liq_inBBDRAFT_1010313	BB_Man_A_Liq_inBBDRAFT_10103134	F040599	MARGTIYEHREPSDIELAWLCGIWEGEGSWVYKNPRTRTYPNGKVYTSKPYLLMCMSMTDQDIMERVGAIMDGRSITYTDGGPAHKAAGQKPIYHINIQGEAATRWTELMKPYLGNRRREKYDLIMEKLNGPDETPKNLS*
BB_Man_A_Liq_inBBDRAFT_1010439	BB_Man_A_Liq_inBBDRAFT_10104392	F001488	MARLELTLNFPKSFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEIYINKVSSHNKFMNEKSQNIETDEYITIKLAYGFNVSQEKK*
BB_Man_A_Liq_inBBDRAFT_1010768	BB_Man_A_Liq_inBBDRAFT_10107681	F038212	MRILGWILFIAVFYGFLNLGLWWEARVSLIDGEVFLNIVKLIFTLVIALIGLYIALRIVVKFD
BB_Man_A_Liq_inBBDRAFT_1010931	BB_Man_A_Liq_inBBDRAFT_10109313	F051158	MRKFGAIFLSLGLTTPASAADYLCDSFEVAFEFYRSNAAMEEFDVAGWRAQPFILRDFPVAPYIETAEEEYDLINVADASSALQGDLYLHQMNTLYQMYEILNPHPITGKFTIYNIRTEVSYVSTCERRRIIQSY*
BB_Man_A_Liq_inBBDRAFT_1011714	BB_Man_A_Liq_inBBDRAFT_10117142	F062784	MIRYLIKGINRLTENLNKANQRMGAHVMNLMSEESEKAIICLNAYLDKKFVTDFDKYQKLTRPQICSRVTKYILSGSHLDWNVADDVRLSIEQDALDAIDGNYLLQELAVQTQKVMYQLATAKNQSFDLRNKV
BB_Man_A_Liq_inBBDRAFT_1012138	BB_Man_A_Liq_inBBDRAFT_10121385	F093630	MTRIRCNSCNTELEVTQPNKSKACGCDNQTLLRLDRSGMPVISGNDLSLITSIDGFSKPKEKKLDKPDPSSYTPKRIPRKMEFETR*
BB_Man_A_Liq_inBBDRAFT_1012190	BB_Man_A_Liq_inBBDRAFT_10121903	F051568	MNTFPIDDQLVMLIDRLNEAVNVCYEAPEIEDQGYPYATGYSRSAMSAVADSLSAIVKQMREEEDG*
BB_Man_A_Liq_inBBDRAFT_1012525	BB_Man_A_Liq_inBBDRAFT_10125252	F062699	MTINVRVTSNSQPIKALVTSNSNKQSIKASVVSDATLMAKNLEDLLDVDVSGVSDKYVIMYDASSQKYIAVNPDEVLSAAVQEPTSPGLPSDFKDQLDSDLDDRVDLDGGSF*
BB_Man_A_Liq_inBBDRAFT_1012550	BB_Man_A_Liq_inBBDRAFT_10125501	F103350	VASVKKYNLTGLNANVELGKQGSYITGSANTIGFYANGGNLQKLEIANATVATEAVTKAQLDDVASDLVQHITVDFDYNSGSSNVATISAGARVFSVTVDIPSAWTGTSDNTTTFVEVGDSSNASRFIRAGDVDVLKVGQYHSQYQYEYSAETVLQLDVTQGSASAGSGTLSIL
BB_Man_A_Liq_inBBDRAFT_1012856	BB_Man_A_Liq_inBBDRAFT_10128562	F001467	MLIFGLSTAGQFHLEMPEFLPLPSNVICEEMDESNFDPNCQHADYSIFRSWCLGNRCDDHAVKGYAKEIAEDGTITWYSTQEQVDLDIDSLEPWQIIRYTQEELSELNIMPEDCTYESEVDGTCGYGLFPPNP*
BB_Man_A_Liq_inBBDRAFT_1013686	BB_Man_A_Liq_inBBDRAFT_10136862	F028484	MSRQDGQPQIRKIGKDYYINIYDVIEMLNAFAEFSLDEFMAKDEQGLDEFECGWFEGDQARLDHLLNLFSMLVAEKRLEKIDNIEKLFEEFPSEKFQRNRTAPLDK*